More than 300 homologs were found in PanDaTox collection
for query gene Mpop_4862 on replicon NC_010725
Organism: Methylobacterium populi BJ001



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_010725  Mpop_4862  two component transcriptional regulator, LuxR family  100 
 
 		 215 aa  419  1e-116  Methylobacterium populi BJ001  Bacteria  normal  1  normal  0.146847 
 
 
-
 
NC_010172  Mext_4345  regulatory protein LuxR  86.05 
 
 		 216 aa  362  2e-99  Methylobacterium extorquens PA1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011757  Mchl_4714  two component transcriptional regulator, LuxR family  86.05 
 
 		 216 aa  362  3e-99  Methylobacterium chloromethanicum CM4  Bacteria  normal  1  normal  0.375128 
 
 
-
 
NC_010172  Mext_3579  regulatory protein LuxR  67.14 
 
 		 213 aa  249  2e-65  Methylobacterium extorquens PA1  Bacteria  normal  0.0227422  normal  1 
 
 
-
 
NC_010511  M446_4981  two component LuxR family transcriptional regulator  34.1 
 
 		 244 aa  109  3e-23  Methylobacterium sp. 4-46  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010571  Oter_3372  two component LuxR family transcriptional regulator  34.13 
 
 		 212 aa  90.1  2e-17  Opitutus terrae PB90-1  Bacteria  normal  1  normal  0.383896 
 
 
-
 
NC_010511  M446_3347  two component LuxR family transcriptional regulator  31.34 
 
 		 234 aa  90.1  2e-17  Methylobacterium sp. 4-46  Bacteria  normal  0.563314  normal  1 
 
 
-
 
NC_007298  Daro_0264  two component LuxR family transcriptional regulator  33.01 
 
 		 221 aa  89  5e-17  Dechloromonas aromatica RCB  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010501  PputW619_4024  two component LuxR family transcriptional regulator  32.54 
 
 		 216 aa  87.8  1e-16  Pseudomonas putida W619  Bacteria  normal  1  hitchhiker  0.00000136895 
 
 
-
 
NC_008254  Meso_0596  two component LuxR family transcriptional regulator  35.27 
 
 		 228 aa  87.4  1e-16  Chelativorans sp. BNC1  Bacteria  normal  1  n/a   
 
 
-
 
NC_002947  PP_1635  LuxR family two component transcriptional regulator  32.85 
 
 		 216 aa  87  2e-16  Pseudomonas putida KT2440  Bacteria  normal  1  normal  0.0994806 
 
 
-
 
NC_009512  Pput_4082  two component LuxR family transcriptional regulator  32.85 
 
 		 216 aa  87  2e-16  Pseudomonas putida F1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_012669  Bcav_0236  two component transcriptional regulator, LuxR family  33.96 
 
 		 224 aa  86.3  3e-16  Beutenbergia cavernae DSM 12333  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013947  Snas_5595  two component transcriptional regulator, LuxR family  31.63 
 
 		 215 aa  86.7  3e-16  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010571  Oter_2496  two component LuxR family transcriptional regulator  32.68 
 
 		 212 aa  86.3  3e-16  Opitutus terrae PB90-1  Bacteria  normal  1  normal  0.996792 
 
 
-
 
NC_014165  Tbis_0228  LuxR family two component transcriptional regulator  37.32 
 
 		 206 aa  86.7  3e-16  Thermobispora bispora DSM 43833  Bacteria  normal  1  normal  1 
 
 
-
 
NC_004578  PSPTO_4027  DNA-binding response regulator, LuxR family  31.25 
 
 		 215 aa  85.9  4e-16  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  1  n/a   
 
 
-
 
NC_011071  Smal_3975  two component transcriptional regulator, LuxR family  30.77 
 
 		 221 aa  85.5  5e-16  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.0482097  normal  0.237128 
 
 
-
 
NC_010322  PputGB1_1237  two component LuxR family transcriptional regulator  32.85 
 
 		 216 aa  85.5  5e-16  Pseudomonas putida GB-1  Bacteria  normal  1  hitchhiker  0.00000000317123 
 
 
-
 
NC_010571  Oter_3231  two component LuxR family transcriptional regulator  32.04 
 
 		 209 aa  85.1  6e-16  Opitutus terrae PB90-1  Bacteria  normal  0.229823  normal  0.0283688 
 
 
-
 
NC_007005  Psyr_1384  LuxR response regulator receiver  30.77 
 
 		 215 aa  85.1  7e-16  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  1  normal  1 
 
 
-
 
NC_003910  CPS_3420  LuxR family DNA-binding response regulator  29.27 
 
 		 216 aa  84.7  9e-16  Colwellia psychrerythraea 34H  Bacteria  normal  1  n/a   
 
 
-
 
NC_010001  Cphy_3936  two component LuxR family transcriptional regulator  30.14 
 
 		 213 aa  84.7  0.000000000000001  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.00507176  n/a   
 
 
-
 
NC_008700  Sama_2076  response regulator receiver protein  28.91 
 
 		 238 aa  84.3  0.000000000000001  Shewanella amazonensis SB2B  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011138  MADE_02260  Response regulator, LuxR family (CheY, HTH domains)  29.36 
 
 		 222 aa  84.3  0.000000000000001  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  1  n/a   
 
 
-
 
NC_011369  Rleg2_1389  two component transcriptional regulator, LuxR family  33.01 
 
 		 206 aa  83.6  0.000000000000002  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.744509  normal  1 
 
 
-
 
NC_012560  Avin_38490  Response regulator, LuxR family  32.54 
 
 		 215 aa  83.2  0.000000000000002  Azotobacter vinelandii DJ  Bacteria  normal  1  n/a   
 
 
-
 
NC_009439  Pmen_1291  two component LuxR family transcriptional regulator  31.58 
 
 		 215 aa  83.6  0.000000000000002  Pseudomonas mendocina ymp  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013530  Xcel_2601  two component transcriptional regulator, LuxR family  32.74 
 
 		 234 aa  83.6  0.000000000000002  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.1212  n/a   
 
 
-
 
NC_013093  Amir_0097  two component transcriptional regulator, LuxR family  33.01 
 
 		 209 aa  83.2  0.000000000000003  Actinosynnema mirum DSM 43827  Bacteria  normal  0.142871  n/a   
 
 
-
 
NC_011830  Dhaf_2789  two component transcriptional regulator, LuxR family  32.08 
 
 		 212 aa  83.2  0.000000000000003  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.246733  n/a   
 
 
-
 
NC_008789  Hhal_1965  two component LuxR family transcriptional regulator  32.55 
 
 		 217 aa  83.2  0.000000000000003  Halorhodospira halophila SL1  Bacteria  normal  1  n/a   
 
 
-
 
NC_011988  Avi_5384  two component response regulator  31.48 
 
 		 216 aa  83.2  0.000000000000003  Agrobacterium vitis S4  Bacteria  normal  1  n/a   
 
 
-
 
NC_008697  Noca_4896  response regulator receiver  31.78 
 
 		 215 aa  82.8  0.000000000000004  Nocardioides sp. JS614  Bacteria  normal  0.446448  normal  0.220667 
 
 
-
 
NC_009485  BBta_0852  two component LuxR family transcriptional regulator  30.95 
 
 		 224 aa  82.4  0.000000000000004  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.852842  normal  0.596615 
 
 
-
 
NC_004347  SO_2648  LuxR family DNA-binding response regulator  28.37 
 
 		 220 aa  82.4  0.000000000000005  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_007958  RPD_0836  LuxR family two component transcriptional regulator  31.48 
 
 		 224 aa  82.4  0.000000000000005  Rhodopseudomonas palustris BisB5  Bacteria  normal  1  normal  0.0588074 
 
 
-
 
NC_013947  Snas_3745  two component transcriptional regulator, LuxR family  31.1 
 
 		 235 aa  82.4  0.000000000000005  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.627677  normal  0.255424 
 
 
-
 
NC_008148  Rxyl_2511  two component LuxR family transcriptional regulator  33.33 
 
 		 229 aa  82.4  0.000000000000005  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  1  n/a   
 
 
-
 
NC_007492  Pfl01_1182  two component LuxR family transcriptional regulator  32.04 
 
 		 216 aa  82  0.000000000000006  Pseudomonas fluorescens Pf0-1  Bacteria  normal  1  normal  0.192356 
 
 
-
 
NC_008700  Sama_0522  response regulator receiver protein  30.43 
 
 		 223 aa  82  0.000000000000006  Shewanella amazonensis SB2B  Bacteria  normal  1  normal  0.211294 
 
 
-
 
NC_009921  Franean1_3185  two component LuxR family transcriptional regulator  32.42 
 
 		 223 aa  82  0.000000000000006  Frankia sp. EAN1pec  Bacteria  normal  0.704721  normal  1 
 
 
-
 
NC_007643  Rru_A3229  two component LuxR family transcriptional regulator  34.67 
 
 		 224 aa  82  0.000000000000007  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  1  n/a   
 
 
-
 
NC_009901  Spea_2554  two component LuxR family transcriptional regulator  26.7 
 
 		 219 aa  81.6  0.000000000000007  Shewanella pealeana ATCC 700345  Bacteria  normal  0.958854  n/a   
 
 
-
 
NC_011894  Mnod_1110  two component transcriptional regulator, LuxR family  31.8 
 
 		 245 aa  81.6  0.000000000000009  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.686827  n/a   
 
 
-
 
NC_013595  Sros_0232  response regulator receiver protein  32.09 
 
 		 213 aa  81.6  0.000000000000009  Streptosporangium roseum DSM 43021  Bacteria  normal  1  normal  1 
 
 
-
 
NC_004310  BR0315  LuxR family DNA-binding response regulator  31.1 
 
 		 213 aa  81.3  0.00000000000001  Brucella suis 1330  Bacteria  normal  1  n/a   
 
 
-
 
NC_009720  Xaut_0991  two component LuxR family transcriptional regulator  29.61 
 
 		 210 aa  80.9  0.00000000000001  Xanthobacter autotrophicus Py2  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013595  Sros_1910  response regulator receiver protein  31.34 
 
 		 226 aa  80.9  0.00000000000001  Streptosporangium roseum DSM 43021  Bacteria  normal  0.238062  normal  0.36963 
 
 
-
 
NC_008254  Meso_0091  two component LuxR family transcriptional regulator  32.71 
 
 		 218 aa  81.3  0.00000000000001  Chelativorans sp. BNC1  Bacteria  normal  1  n/a   
 
 
-
 
NC_010505  Mrad2831_4801  two component LuxR family transcriptional regulator  35.55 
 
 		 223 aa  81.3  0.00000000000001  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  1  normal  0.136897 
 
 
-
 
NC_010717  PXO_03258  two-component system regulatory protein  28.85 
 
 		 222 aa  80.9  0.00000000000001  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  1  n/a   
 
 
-
 
NC_013595  Sros_9329  response regulator receiver protein  30.77 
 
 		 217 aa  80.1  0.00000000000002  Streptosporangium roseum DSM 43021  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008322  Shewmr7_1663  two component LuxR family transcriptional regulator  28.71 
 
 		 220 aa  80.1  0.00000000000002  Shewanella sp. MR-7  Bacteria  normal  0.0154836  unclonable  0.0000152825 
 
 
-
 
NC_013131  Caci_7812  two component transcriptional regulator, LuxR family  34.39 
 
 		 227 aa  80.1  0.00000000000002  Catenulispora acidiphila DSM 44928  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011898  Ccel_1863  two component transcriptional regulator, LuxR family  28.84 
 
 		 216 aa  80.5  0.00000000000002  Clostridium cellulolyticum H10  Bacteria  hitchhiker  0.00000548978  n/a   
 
 
-
 
NC_007778  RPB_4565  two component LuxR family transcriptional regulator  30.56 
 
 		 224 aa  79.7  0.00000000000003  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.156913  normal  1 
 
 
-
 
NC_011004  Rpal_0920  two component transcriptional regulator, LuxR family  31.02 
 
 		 225 aa  80.1  0.00000000000003  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.491034  n/a   
 
 
-
 
NC_008321  Shewmr4_1588  two component LuxR family transcriptional regulator  28.71 
 
 		 220 aa  79.7  0.00000000000003  Shewanella sp. MR-4  Bacteria  normal  0.0618082  normal  0.0591517 
 
 
-
 
NC_008345  Sfri_2305  two component transcriptional regulator, LuxR family protein  26.92 
 
 		 220 aa  79.7  0.00000000000003  Shewanella frigidimarina NCIMB 400  Bacteria  normal  1  n/a   
 
 
-
 
NC_009665  Shew185_2486  two component LuxR family transcriptional regulator  26.92 
 
 		 220 aa  80.1  0.00000000000003  Shewanella baltica OS185  Bacteria  normal  0.637953  n/a   
 
 
-
 
NC_009832  Spro_3589  two component LuxR family transcriptional regulator  33.57 
 
 		 210 aa  79.7  0.00000000000003  Serratia proteamaculans 568  Bacteria  normal  0.993543  normal  0.0443312 
 
 
-
 
NC_009052  Sbal_2493  two component LuxR family transcriptional regulator  26.92 
 
 		 220 aa  80.1  0.00000000000003  Shewanella baltica OS155  Bacteria  normal  1  n/a   
 
 
-
 
NC_009092  Shew_1545  two component LuxR family transcriptional regulator  28.16 
 
 		 219 aa  79.7  0.00000000000003  Shewanella loihica PV-4  Bacteria  normal  0.505974  normal  1 
 
 
-
 
NC_012850  Rleg_1495  two component transcriptional regulator, LuxR family  32.37 
 
 		 207 aa  79.3  0.00000000000004  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.194449  normal  0.395611 
 
 
-
 
NC_013131  Caci_2656  two component transcriptional regulator, LuxR family  33.02 
 
 		 226 aa  79.3  0.00000000000004  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.161573  normal  1 
 
 
-
 
NC_009621  Smed_5114  two component LuxR family transcriptional regulator  33.82 
 
 		 230 aa  79.3  0.00000000000004  Sinorhizobium medicae WSM419  Bacteria  normal  1  decreased coverage  0.00554548 
 
 
-
 
NC_010320  Teth514_2042  two component LuxR family transcriptional regulator  25.85 
 
 		 208 aa  79.3  0.00000000000004  Thermoanaerobacter sp. X514  Bacteria  normal  1  n/a   
 
 
-
 
NC_011886  Achl_2270  two component transcriptional regulator, LuxR family  34.8 
 
 		 242 aa  79  0.00000000000005  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.000000000113212 
 
 
-
 
NC_009338  Mflv_5014  two component LuxR family transcriptional regulator  30.54 
 
 		 209 aa  79  0.00000000000005  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.103708  normal  0.29037 
 
 
-
 
NC_008254  Meso_0341  two component LuxR family transcriptional regulator  39.23 
 
 		 216 aa  78.6  0.00000000000006  Chelativorans sp. BNC1  Bacteria  normal  1  n/a   
 
 
-
 
NC_010506  Swoo_2721  two component LuxR family transcriptional regulator  26.7 
 
 		 219 aa  78.6  0.00000000000006  Shewanella woodyi ATCC 51908  Bacteria  normal  1  hitchhiker  0.001499 
 
 
-
 
NC_009921  Franean1_6351  two component LuxR family transcriptional regulator  34.29 
 
 		 244 aa  78.6  0.00000000000006  Frankia sp. EAN1pec  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008577  Shewana3_1732  two component LuxR family transcriptional regulator  28.71 
 
 		 220 aa  78.6  0.00000000000006  Shewanella sp. ANA-3  Bacteria  hitchhiker  0.0049943  normal  0.183248 
 
 
-
 
NC_009012  Cthe_1267  two component LuxR family transcriptional regulator  29.3 
 
 		 216 aa  78.6  0.00000000000006  Clostridium thermocellum ATCC 27405  Bacteria  normal  1  n/a   
 
 
-
 
NC_007412  Ava_C0116  two component LuxR family transcriptional regulator  30.05 
 
 		 209 aa  78.6  0.00000000000007  Anabaena variabilis ATCC 29413  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011663  Sbal223_1858  two component transcriptional regulator, LuxR family  25.96 
 
 		 220 aa  78.6  0.00000000000007  Shewanella baltica OS223  Bacteria  decreased coverage  0.00870294  decreased coverage  0.00000000166193 
 
 
-
 
NC_009523  RoseRS_0691  two component LuxR family transcriptional regulator  35.38 
 
 		 227 aa  78.2  0.00000000000008  Roseiflexus sp. RS-1  Bacteria  normal  1  normal  0.0394761 
 
 
-
 
NC_008463  PA14_17670  LuxR family transcriptional regulator  31.58 
 
 		 217 aa  78.2  0.00000000000009  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013739  Cwoe_2472  two component transcriptional regulator, LuxR family  31.92 
 
 		 221 aa  78.2  0.00000000000009  Conexibacter woesei DSM 14684  Bacteria  normal  0.0113125  hitchhiker  0.00367669 
 
 
-
 
NC_009656  PSPA7_1537  putative two-component response regulator  31.58 
 
 		 217 aa  78.2  0.00000000000009  Pseudomonas aeruginosa PA7  Bacteria  normal  1  n/a   
 
 
-
 
NC_013521  Sked_17000  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  33.04 
 
 		 233 aa  77.4  0.0000000000001  Sanguibacter keddieii DSM 10542  Bacteria  normal  1  normal  0.523967 
 
 
-
 
NC_009783  VIBHAR_00157  transcriptional regulator LuxR  28.43 
 
 		 211 aa  77.8  0.0000000000001  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_013522  Taci_0801  two component transcriptional regulator, LuxR family  30.33 
 
 		 227 aa  77.8  0.0000000000001  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  1  n/a   
 
 
-
 
NC_009438  Sputcn32_2247  two component LuxR family transcriptional regulator  28.23 
 
 		 220 aa  77.8  0.0000000000001  Shewanella putrefaciens CN-32  Bacteria  normal  0.998494  n/a   
 
 
-
 
NC_013093  Amir_0601  two component transcriptional regulator, LuxR family  29.81 
 
 		 215 aa  77  0.0000000000002  Actinosynnema mirum DSM 43827  Bacteria  normal  1  n/a   
 
 
-
 
NC_013172  Bfae_20460  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  32.27 
 
 		 229 aa  77  0.0000000000002  Brachybacterium faecium DSM 4810  Bacteria  normal  0.0212792  n/a   
 
 
-
 
NC_009997  Sbal195_1319  two component LuxR family transcriptional regulator  31.91 
 
 		 216 aa  77  0.0000000000002  Shewanella baltica OS195  Bacteria  normal  0.0542522  decreased coverage  0.000972679 
 
 
-
 
NC_013131  Caci_5202  two component transcriptional regulator, LuxR family  33.81 
 
 		 225 aa  77.4  0.0000000000002  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.677169  normal  0.920773 
 
 
-
 
NC_009667  Oant_0408  two component LuxR family transcriptional regulator  31.43 
 
 		 214 aa  77.4  0.0000000000002  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.82136  n/a   
 
 
-
 
NC_011894  Mnod_3782  two component transcriptional regulator, LuxR family  30.39 
 
 		 223 aa  76.6  0.0000000000002  Methylobacterium nodulans ORS 2060  Bacteria  normal  1  n/a   
 
 
-
 
NC_009997  Sbal195_2606  two component LuxR family transcriptional regulator  25.96 
 
 		 220 aa  77  0.0000000000002  Shewanella baltica OS195  Bacteria  hitchhiker  0.00642184  hitchhiker  0.00275886 
 
 
-
 
NC_010511  M446_2139  two component LuxR family transcriptional regulator  31.48 
 
 		 244 aa  77.4  0.0000000000002  Methylobacterium sp. 4-46  Bacteria  normal  0.0202732  normal  0.168937 
 
 
-
 
NC_008009  Acid345_0972  two component LuxR family transcriptional regulator  28.97 
 
 		 227 aa  77  0.0000000000002  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.299836  normal  0.0302219 
 
 
-
 
NC_008346  Swol_0186  response regulator receiver protein  29.86 
 
 		 213 aa  77  0.0000000000002  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  decreased coverage  0.00000327076  n/a   
 
 
-
 
NC_013595  Sros_3998  response regulator receiver protein  34.55 
 
 		 233 aa  77.4  0.0000000000002  Streptosporangium roseum DSM 43021  Bacteria  normal  0.363745  normal  0.263649 
 
 
-
 
NC_009767  Rcas_0211  two component LuxR family transcriptional regulator  35.85 
 
 		 227 aa  77  0.0000000000002  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.196171  normal  0.645513 
 
 
-
 
NC_014158  Tpau_1874  two component transcriptional regulator, LuxR family  34.27 
 
 		 213 aa  77  0.0000000000002  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.635222  n/a   
 
 
-
 
NC_009505  BOV_0331  LuxR family DNA-binding response regulator  30.58 
 
 		 213 aa  77.4  0.0000000000002  Brucella ovis ATCC 25840  Bacteria  normal  0.338839  n/a   
 
 
-
 
NC_009921  Franean1_2449  two component LuxR family transcriptional regulator  30.14 
 
 		 211 aa  76.6  0.0000000000003  Frankia sp. EAN1pec  Bacteria  normal  1  normal  0.265588 
 
 
-
 
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