More than 300 homologs were found in PanDaTox collection
for query gene Mext_3579 on replicon NC_010172
Organism: Methylobacterium extorquens PA1



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_010172  Mext_3579  regulatory protein LuxR  100 
 
 		 213 aa  417  1e-116  Methylobacterium extorquens PA1  Bacteria  normal  0.0227422  normal  1 
 
 
-
 
NC_010172  Mext_4345  regulatory protein LuxR  69.48 
 
 		 216 aa  268  5e-71  Methylobacterium extorquens PA1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011757  Mchl_4714  two component transcriptional regulator, LuxR family  69.48 
 
 		 216 aa  268  5e-71  Methylobacterium chloromethanicum CM4  Bacteria  normal  1  normal  0.375128 
 
 
-
 
NC_010725  Mpop_4862  two component transcriptional regulator, LuxR family  68.54 
 
 		 215 aa  264  8e-70  Methylobacterium populi BJ001  Bacteria  normal  1  normal  0.146847 
 
 
-
 
NC_010511  M446_4981  two component LuxR family transcriptional regulator  32.85 
 
 		 244 aa  114  1.0000000000000001e-24  Methylobacterium sp. 4-46  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010511  M446_3347  two component LuxR family transcriptional regulator  29.35 
 
 		 234 aa  103  2e-21  Methylobacterium sp. 4-46  Bacteria  normal  0.563314  normal  1 
 
 
-
 
NC_008254  Meso_0596  two component LuxR family transcriptional regulator  38.83 
 
 		 228 aa  101  7e-21  Chelativorans sp. BNC1  Bacteria  normal  1  n/a   
 
 
-
 
NC_009621  Smed_5114  two component LuxR family transcriptional regulator  34.29 
 
 		 230 aa  94.7  9e-19  Sinorhizobium medicae WSM419  Bacteria  normal  1  decreased coverage  0.00554548 
 
 
-
 
NC_007298  Daro_0264  two component LuxR family transcriptional regulator  33.98 
 
 		 221 aa  94.7  9e-19  Dechloromonas aromatica RCB  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011894  Mnod_3782  two component transcriptional regulator, LuxR family  35.12 
 
 		 223 aa  90.1  2e-17  Methylobacterium nodulans ORS 2060  Bacteria  normal  1  n/a   
 
 
-
 
NC_009720  Xaut_0991  two component LuxR family transcriptional regulator  31.37 
 
 		 210 aa  89.7  3e-17  Xanthobacter autotrophicus Py2  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011894  Mnod_1110  two component transcriptional regulator, LuxR family  33.5 
 
 		 245 aa  88.2  8e-17  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.686827  n/a   
 
 
-
 
NC_013947  Snas_5595  two component transcriptional regulator, LuxR family  32.06 
 
 		 215 aa  85.9  4e-16  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010320  Teth514_2042  two component LuxR family transcriptional regulator  26.07 
 
 		 208 aa  83.2  0.000000000000002  Thermoanaerobacter sp. X514  Bacteria  normal  1  n/a   
 
 
-
 
NC_008740  Maqu_2218  two component LuxR family transcriptional regulator  28.1 
 
 		 221 aa  82.8  0.000000000000003  Marinobacter aquaeolei VT8  Bacteria  normal  1  n/a   
 
 
-
 
NC_013595  Sros_3998  response regulator receiver protein  34.88 
 
 		 233 aa  83.2  0.000000000000003  Streptosporangium roseum DSM 43021  Bacteria  normal  0.363745  normal  0.263649 
 
 
-
 
NC_004578  PSPTO_4027  DNA-binding response regulator, LuxR family  31.16 
 
 		 215 aa  82.8  0.000000000000004  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  1  n/a   
 
 
-
 
NC_010511  M446_2139  two component LuxR family transcriptional regulator  32.55 
 
 		 244 aa  82.4  0.000000000000004  Methylobacterium sp. 4-46  Bacteria  normal  0.0202732  normal  0.168937 
 
 
-
 
NC_009457  VC0395_A2275  LuxR family transcriptional regulator  26.67 
 
 		 209 aa  82.4  0.000000000000004  Vibrio cholerae O395  Bacteria  normal  0.314776  n/a   
 
 
-
 
NC_007643  Rru_A3229  two component LuxR family transcriptional regulator  32.89 
 
 		 224 aa  82  0.000000000000005  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  1  n/a   
 
 
-
 
NC_010505  Mrad2831_4801  two component LuxR family transcriptional regulator  36.36 
 
 		 223 aa  82  0.000000000000006  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  1  normal  0.136897 
 
 
-
 
NC_002947  PP_2665  LuxR family two component transcriptional regulator  28.91 
 
 		 221 aa  81.6  0.000000000000008  Pseudomonas putida KT2440  Bacteria  normal  0.107491  normal  1 
 
 
-
 
NC_013456  VEA_002211  transcriptional regulator LuxR family  28.91 
 
 		 209 aa  81.6  0.000000000000008  Vibrio sp. Ex25  Bacteria  normal  1  n/a   
 
 
-
 
NC_010322  PputGB1_3138  two component LuxR family transcriptional regulator  28.91 
 
 		 221 aa  81.3  0.000000000000009  Pseudomonas putida GB-1  Bacteria  normal  1  normal  0.892266 
 
 
-
 
NC_012560  Avin_38490  Response regulator, LuxR family  33.17 
 
 		 215 aa  81.3  0.00000000000001  Azotobacter vinelandii DJ  Bacteria  normal  1  n/a   
 
 
-
 
NC_007404  Tbd_2570  two component LuxR family transcriptional regulator  28.9 
 
 		 224 aa  81.3  0.00000000000001  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.282998  normal  0.225314 
 
 
-
 
NC_009832  Spro_3589  two component LuxR family transcriptional regulator  26.7 
 
 		 210 aa  81.3  0.00000000000001  Serratia proteamaculans 568  Bacteria  normal  0.993543  normal  0.0443312 
 
 
-
 
NC_010717  PXO_03258  two-component system regulatory protein  28.02 
 
 		 222 aa  80.9  0.00000000000001  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  1  n/a   
 
 
-
 
NC_009783  VIBHAR_00157  transcriptional regulator LuxR  27.4 
 
 		 211 aa  81.3  0.00000000000001  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009512  Pput_2173  two component LuxR family transcriptional regulator  29.38 
 
 		 221 aa  80.9  0.00000000000001  Pseudomonas putida F1  Bacteria  normal  0.548338  normal  1 
 
 
-
 
NC_009439  Pmen_1291  two component LuxR family transcriptional regulator  31.02 
 
 		 215 aa  80.9  0.00000000000001  Pseudomonas mendocina ymp  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009901  Spea_1733  two component LuxR family transcriptional regulator  30.39 
 
 		 210 aa  80.1  0.00000000000002  Shewanella pealeana ATCC 700345  Bacteria  normal  0.137963  n/a   
 
 
-
 
NC_009012  Cthe_1267  two component LuxR family transcriptional regulator  29.33 
 
 		 216 aa  80.5  0.00000000000002  Clostridium thermocellum ATCC 27405  Bacteria  normal  1  n/a   
 
 
-
 
NC_007005  Psyr_1384  LuxR response regulator receiver  30.62 
 
 		 215 aa  79.7  0.00000000000003  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008699  Noca_1438  response regulator receiver  31.19 
 
 		 213 aa  79.7  0.00000000000003  Nocardioides sp. JS614  Bacteria  normal  0.494689  n/a   
 
 
-
 
NC_010571  Oter_2496  two component LuxR family transcriptional regulator  36.43 
 
 		 212 aa  80.1  0.00000000000003  Opitutus terrae PB90-1  Bacteria  normal  1  normal  0.996792 
 
 
-
 
NC_011666  Msil_2341  two component transcriptional regulator, LuxR family  30.1 
 
 		 209 aa  79.3  0.00000000000004  Methylocella silvestris BL2  Bacteria  n/a    normal  0.193906 
 
 
-
 
NC_008009  Acid345_3502  two component LuxR family transcriptional regulator  30.77 
 
 		 228 aa  79.3  0.00000000000004  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008254  Meso_0341  two component LuxR family transcriptional regulator  29.13 
 
 		 216 aa  79.3  0.00000000000004  Chelativorans sp. BNC1  Bacteria  normal  1  n/a   
 
 
-
 
NC_002947  PP_1635  LuxR family two component transcriptional regulator  30.81 
 
 		 216 aa  79  0.00000000000005  Pseudomonas putida KT2440  Bacteria  normal  1  normal  0.0994806 
 
 
-
 
NC_009972  Haur_4778  two component LuxR family transcriptional regulator  29.81 
 
 		 208 aa  79  0.00000000000005  Herpetosiphon aurantiacus ATCC 23779  Bacteria  hitchhiker  0.00000269792  n/a   
 
 
-
 
NC_013093  Amir_0097  two component transcriptional regulator, LuxR family  29.61 
 
 		 209 aa  79  0.00000000000005  Actinosynnema mirum DSM 43827  Bacteria  normal  0.142871  n/a   
 
 
-
 
NC_010682  Rpic_2046  two component transcriptional regulator, LuxR family  39.04 
 
 		 219 aa  79  0.00000000000005  Ralstonia pickettii 12J  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008700  Sama_2076  response regulator receiver protein  29.3 
 
 		 238 aa  79  0.00000000000005  Shewanella amazonensis SB2B  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009512  Pput_4082  two component LuxR family transcriptional regulator  30.81 
 
 		 216 aa  79  0.00000000000005  Pseudomonas putida F1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009439  Pmen_1943  two component LuxR family transcriptional regulator  29.38 
 
 		 221 aa  79  0.00000000000005  Pseudomonas mendocina ymp  Bacteria  normal  0.550145  normal  1 
 
 
-
 
NC_012856  Rpic12D_1738  two component transcriptional regulator, LuxR family  39.04 
 
 		 219 aa  79  0.00000000000006  Ralstonia pickettii 12D  Bacteria  normal  0.0459515  normal  0.949758 
 
 
-
 
NC_003910  CPS_0937  LuxR family DNA-binding response regulator  28.43 
 
 		 223 aa  78.6  0.00000000000006  Colwellia psychrerythraea 34H  Bacteria  normal  0.715087  n/a   
 
 
-
 
NC_010501  PputW619_4024  two component LuxR family transcriptional regulator  30.52 
 
 		 216 aa  79  0.00000000000006  Pseudomonas putida W619  Bacteria  normal  1  hitchhiker  0.00000136895 
 
 
-
 
NC_009901  Spea_2554  two component LuxR family transcriptional regulator  29.72 
 
 		 219 aa  78.6  0.00000000000006  Shewanella pealeana ATCC 700345  Bacteria  normal  0.958854  n/a   
 
 
-
 
NC_009667  Oant_0408  two component LuxR family transcriptional regulator  30.92 
 
 		 214 aa  78.6  0.00000000000007  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.82136  n/a   
 
 
-
 
NC_007963  Csal_0866  two component LuxR family transcriptional regulator  25.73 
 
 		 220 aa  78.2  0.00000000000008  Chromohalobacter salexigens DSM 3043  Bacteria  normal  1  n/a   
 
 
-
 
NC_008148  Rxyl_2511  two component LuxR family transcriptional regulator  29.63 
 
 		 229 aa  78.2  0.00000000000008  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  1  n/a   
 
 
-
 
NC_007912  Sde_1571  XRE family transcriptional regulator  28.31 
 
 		 227 aa  78.2  0.00000000000009  Saccharophagus degradans 2-40  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008345  Sfri_3170  two component transcriptional regulator, LuxR family protein  26.7 
 
 		 227 aa  78.2  0.0000000000001  Shewanella frigidimarina NCIMB 400  Bacteria  normal  1  n/a   
 
 
-
 
NC_012791  Vapar_0555  two component transcriptional regulator, LuxR family  32.77 
 
 		 227 aa  77.8  0.0000000000001  Variovorax paradoxus S110  Bacteria  normal  0.401942  n/a   
 
 
-
 
NC_011071  Smal_3975  two component transcriptional regulator, LuxR family  28.5 
 
 		 221 aa  77.4  0.0000000000001  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.0482097  normal  0.237128 
 
 
-
 
NC_008752  Aave_3591  two component LuxR family transcriptional regulator  32.9 
 
 		 240 aa  78.2  0.0000000000001  Acidovorax citrulli AAC00-1  Bacteria  normal  0.552533  hitchhiker  0.00313735 
 
 
-
 
NC_010577  XfasM23_0261  two component LuxR family transcriptional regulator  25.96 
 
 		 210 aa  76.6  0.0000000000002  Xylella fastidiosa M23  Bacteria  normal  0.574059  n/a   
 
 
-
 
NC_010001  Cphy_3936  two component LuxR family transcriptional regulator  27.36 
 
 		 213 aa  77  0.0000000000002  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.00507176  n/a   
 
 
-
 
NC_010571  Oter_3372  two component LuxR family transcriptional regulator  29.13 
 
 		 212 aa  77  0.0000000000002  Opitutus terrae PB90-1  Bacteria  normal  1  normal  0.383896 
 
 
-
 
NC_009656  PSPA7_1537  putative two-component response regulator  31.28 
 
 		 217 aa  77  0.0000000000002  Pseudomonas aeruginosa PA7  Bacteria  normal  1  n/a   
 
 
-
 
NC_008254  Meso_0091  two component LuxR family transcriptional regulator  30 
 
 		 218 aa  77  0.0000000000002  Chelativorans sp. BNC1  Bacteria  normal  1  n/a   
 
 
-
 
NC_008463  PA14_17670  LuxR family transcriptional regulator  31.28 
 
 		 217 aa  77  0.0000000000002  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013093  Amir_5893  two component transcriptional regulator, LuxR family  31.43 
 
 		 218 aa  77.4  0.0000000000002  Actinosynnema mirum DSM 43827  Bacteria  normal  1  n/a   
 
 
-
 
NC_013131  Caci_5202  two component transcriptional regulator, LuxR family  31.73 
 
 		 225 aa  76.3  0.0000000000003  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.677169  normal  0.920773 
 
 
-
 
NC_004347  SO_2648  LuxR family DNA-binding response regulator  29.67 
 
 		 220 aa  76.6  0.0000000000003  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_013595  Sros_1910  response regulator receiver protein  28.5 
 
 		 226 aa  76.6  0.0000000000003  Streptosporangium roseum DSM 43021  Bacteria  normal  0.238062  normal  0.36963 
 
 
-
 
NC_008321  Shewmr4_3283  two component LuxR family transcriptional regulator  27.67 
 
 		 223 aa  76.6  0.0000000000003  Shewanella sp. MR-4  Bacteria  normal  1  normal  0.335218 
 
 
-
 
NC_008322  Shewmr7_0664  two component LuxR family transcriptional regulator  27.67 
 
 		 223 aa  76.3  0.0000000000003  Shewanella sp. MR-7  Bacteria  normal  1  normal  0.358413 
 
 
-
 
NC_008577  Shewana3_3459  two component LuxR family transcriptional regulator  27.67 
 
 		 223 aa  76.6  0.0000000000003  Shewanella sp. ANA-3  Bacteria  normal  0.306063  normal  0.532773 
 
 
-
 
NC_011830  Dhaf_2789  two component transcriptional regulator, LuxR family  32.24 
 
 		 212 aa  76.6  0.0000000000003  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.246733  n/a   
 
 
-
 
NC_010322  PputGB1_1237  two component LuxR family transcriptional regulator  30.77 
 
 		 216 aa  76.3  0.0000000000004  Pseudomonas putida GB-1  Bacteria  normal  1  hitchhiker  0.00000000317123 
 
 
-
 
NC_010511  M446_0625  two component LuxR family transcriptional regulator  30.54 
 
 		 221 aa  76.3  0.0000000000004  Methylobacterium sp. 4-46  Bacteria  normal  0.793996  hitchhiker  0.00440064 
 
 
-
 
NC_008700  Sama_0522  response regulator receiver protein  27.18 
 
 		 223 aa  76.3  0.0000000000004  Shewanella amazonensis SB2B  Bacteria  normal  1  normal  0.211294 
 
 
-
 
NC_003910  CPS_3420  LuxR family DNA-binding response regulator  26.21 
 
 		 216 aa  75.9  0.0000000000005  Colwellia psychrerythraea 34H  Bacteria  normal  1  n/a   
 
 
-
 
NC_010571  Oter_3231  two component LuxR family transcriptional regulator  28.92 
 
 		 209 aa  75.9  0.0000000000005  Opitutus terrae PB90-1  Bacteria  normal  0.229823  normal  0.0283688 
 
 
-
 
NC_009505  BOV_0331  LuxR family DNA-binding response regulator  30.43 
 
 		 213 aa  75.5  0.0000000000005  Brucella ovis ATCC 25840  Bacteria  normal  0.338839  n/a   
 
 
-
 
NC_011898  Ccel_1863  two component transcriptional regulator, LuxR family  28.91 
 
 		 216 aa  75.5  0.0000000000005  Clostridium cellulolyticum H10  Bacteria  hitchhiker  0.00000548978  n/a   
 
 
-
 
NC_010506  Swoo_2245  two component LuxR family transcriptional regulator  33.59 
 
 		 218 aa  75.5  0.0000000000005  Shewanella woodyi ATCC 51908  Bacteria  hitchhiker  0.00227369  normal  0.0543921 
 
 
-
 
NC_009092  Shew_1545  two component LuxR family transcriptional regulator  28.77 
 
 		 219 aa  75.5  0.0000000000006  Shewanella loihica PV-4  Bacteria  normal  0.505974  normal  1 
 
 
-
 
NC_011662  Tmz1t_3355  two component transcriptional regulator, LuxR family  35.22 
 
 		 208 aa  75.5  0.0000000000006  Thauera sp. MZ1T  Bacteria  normal  0.687232  n/a   
 
 
-
 
NC_011894  Mnod_1543  two component transcriptional regulator, LuxR family  29.56 
 
 		 221 aa  75.1  0.0000000000007  Methylobacterium nodulans ORS 2060  Bacteria  normal  1  n/a   
 
 
-
 
NC_013204  Elen_0565  two component transcriptional regulator, LuxR family  30.84 
 
 		 213 aa  75.1  0.0000000000007  Eggerthella lenta DSM 2243  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009523  RoseRS_3278  two component LuxR family transcriptional regulator  25.37 
 
 		 214 aa  75.1  0.0000000000007  Roseiflexus sp. RS-1  Bacteria  normal  1  normal  0.749326 
 
 
-
 
NC_011071  Smal_2061  two component transcriptional regulator, LuxR family  27.49 
 
 		 224 aa  75.1  0.0000000000007  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.737796  normal  1 
 
 
-
 
NC_010513  Xfasm12_0290  response regulator receiver protein  25.96 
 
 		 210 aa  75.1  0.0000000000007  Xylella fastidiosa M12  Bacteria  normal  1  n/a   
 
 
-
 
NC_009380  Strop_4132  response regulator receiver  29.41 
 
 		 235 aa  75.1  0.0000000000007  Salinispora tropica CNB-440  Bacteria  normal  0.232221  normal  1 
 
 
-
 
NC_013947  Snas_3745  two component transcriptional regulator, LuxR family  27.94 
 
 		 235 aa  75.1  0.0000000000008  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.627677  normal  0.255424 
 
 
-
 
NC_004310  BR0315  LuxR family DNA-binding response regulator  30.48 
 
 		 213 aa  75.1  0.0000000000008  Brucella suis 1330  Bacteria  normal  1  n/a   
 
 
-
 
NC_007204  Psyc_0602  nitrate/nitrite response regulator  28.85 
 
 		 219 aa  75.1  0.0000000000008  Psychrobacter arcticus 273-4  Bacteria  normal  0.790372  normal  1 
 
 
-
 
NC_007492  Pfl01_1182  two component LuxR family transcriptional regulator  30.43 
 
 		 216 aa  75.1  0.0000000000008  Pseudomonas fluorescens Pf0-1  Bacteria  normal  1  normal  0.192356 
 
 
-
 
NC_008789  Hhal_1965  two component LuxR family transcriptional regulator  32.23 
 
 		 217 aa  75.1  0.0000000000008  Halorhodospira halophila SL1  Bacteria  normal  1  n/a   
 
 
-
 
NC_009430  Rsph17025_4184  hypothetical protein  34.88 
 
 		 207 aa  75.1  0.0000000000008  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.400045  normal  0.380291 
 
 
-
 
NC_009523  RoseRS_4275  two component LuxR family transcriptional regulator  29.86 
 
 		 226 aa  74.7  0.0000000000009  Roseiflexus sp. RS-1  Bacteria  normal  0.798613  normal  0.287125 
 
 
-
 
NC_011663  Sbal223_1858  two component transcriptional regulator, LuxR family  29.38 
 
 		 220 aa  74.7  0.0000000000009  Shewanella baltica OS223  Bacteria  decreased coverage  0.00870294  decreased coverage  0.00000000166193 
 
 
-
 
NC_009438  Sputcn32_2247  two component LuxR family transcriptional regulator  26.19 
 
 		 220 aa  74.7  0.0000000000009  Shewanella putrefaciens CN-32  Bacteria  normal  0.998494  n/a   
 
 
-
 
NC_009664  Krad_4263  two component transcriptional regulator, LuxR family  29.58 
 
 		 230 aa  74.3  0.000000000001  Kineococcus radiotolerans SRS30216  Bacteria  normal  1  normal  0.455968 
 
 
-
 
NC_008321  Shewmr4_1588  two component LuxR family transcriptional regulator  27.96 
 
 		 220 aa  74.3  0.000000000001  Shewanella sp. MR-4  Bacteria  normal  0.0618082  normal  0.0591517 
 
 
-
 
NC_008322  Shewmr7_1663  two component LuxR family transcriptional regulator  27.96 
 
 		 220 aa  74.3  0.000000000001  Shewanella sp. MR-7  Bacteria  normal  0.0154836  unclonable  0.0000152825 
 
 
-
 
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