| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_2326 |
|---|
| Symbol | |
|---|
| ID | 5455274 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | + |
|---|
| Start bp | 2503946 |
|---|
| End bp | 2504578 |
|---|
| Gene Length | 633 bp |
|---|
| Protein Length | 210 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 640877906 |
|---|
| Product | two component LuxR family transcriptional regulator |
|---|
| Protein accession | YP_001413597 |
|---|
| Protein GI | 154252773 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 39 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 0.000518478 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | TTGAGCGCAG AACGCATCAT CGTGGCCGAC GACCATCCGG TTTTCCGGAT GGGGATGCGC
CATATCCTGG CGCGTGTTTC GCCTGGAGCC GCGATCGAGG AGGCAGGCAC GTTCGAGGAA
GTGCTGACAC TGGCGGAGAG CGGCGCGGCG CCGGGCATGT TCGTGCTCGA CCTCATTTTT
CCGGGGTTTG CCGCAGAGAC CTCCATCGCG GCGCTGAGGC GGCGCTTCCC GCGCGCGACA
CTCGCCATCG TCTCGATGGC GGATGACAGC GAAACCATCG ACGTGGTGAT GGCGGCGGGC
GCGGACGGTT TTGTCGGCAA GGCGGTACCG CCGGACGAGA TCGCGGAGGC GATCGGCGCG
ATCCATGACG GCGAGATCGT GGTGAAGTCC GCGGCTGCGC ATCTACCGAC GCCCGGCGGC
GCAAGGACGG GCGCGGGCGA AAGCGACGTG CAGCTTTCGC CGCGCCAGCG CGAAGTGCTG
AAGCTCGTCG CAGCGGGTAT GACCAACAAG GAGATCGGGC GCGAACTCGG CATCTCGCCT
GTGACAGCGC GGATGCATGT ATCGGCGCTG CTTCGGACAC TCGGTGTCGC CAGCCGCTCG
GCGGCGGCGG GCGTGGCGAT GAAACTGCTT TAG
|
|---|
| Protein sequence | MSAERIIVAD DHPVFRMGMR HILARVSPGA AIEEAGTFEE VLTLAESGAA PGMFVLDLIF
PGFAAETSIA ALRRRFPRAT LAIVSMADDS ETIDVVMAAG ADGFVGKAVP PDEIAEAIGA
IHDGEIVVKS AAAHLPTPGG ARTGAGESDV QLSPRQREVL KLVAAGMTNK EIGRELGISP
VTARMHVSAL LRTLGVASRS AAAGVAMKLL
|
|---|
| |