More than 300 homologs were found in PanDaTox collection
for query gene Rpic12D_2334 on replicon NC_012856
Organism: Ralstonia pickettii 12D



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_012856  Rpic12D_2334  two component transcriptional regulator, LuxR family  100 
 
 		 221 aa  441  1e-123  Ralstonia pickettii 12D  Bacteria  normal  0.477601  normal  0.267999 
 
 
-
 
NC_010682  Rpic_2723  two component transcriptional regulator, LuxR family  100 
 
 		 221 aa  441  1e-123  Ralstonia pickettii 12J  Bacteria  normal  1  normal  1 
 
 
-
 
NC_003295  RSc2455  response regulator VSRC transcription regulator protein  94.57 
 
 		 221 aa  425  1e-118  Ralstonia solanacearum GMI1000  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007347  Reut_A2742  LuxR response regulator receiver  66.36 
 
 		 219 aa  301  5.000000000000001e-81  Ralstonia eutropha JMP134  Bacteria  normal  1  n/a   
 
 
-
 
NC_007973  Rmet_2880  two component LuxR family transcriptional regulator  65.9 
 
 		 219 aa  298  6e-80  Cupriavidus metallidurans CH34  Bacteria  normal  1  normal  0.449931 
 
 
-
 
NC_008752  Aave_3591  two component LuxR family transcriptional regulator  40.27 
 
 		 240 aa  142  4e-33  Acidovorax citrulli AAC00-1  Bacteria  normal  0.552533  hitchhiker  0.00313735 
 
 
-
 
NC_010002  Daci_5980  two component LuxR family transcriptional regulator  42.25 
 
 		 245 aa  139  3.9999999999999997e-32  Delftia acidovorans SPH-1  Bacteria  normal  1  normal  0.108646 
 
 
-
 
NC_008752  Aave_2497  two component LuxR family transcriptional regulator  37.85 
 
 		 229 aa  132  3.9999999999999996e-30  Acidovorax citrulli AAC00-1  Bacteria  hitchhiker  0.000315398  normal  0.0281112 
 
 
-
 
NC_009832  Spro_3589  two component LuxR family transcriptional regulator  35.15 
 
 		 210 aa  127  9.000000000000001e-29  Serratia proteamaculans 568  Bacteria  normal  0.993543  normal  0.0443312 
 
 
-
 
NC_009952  Dshi_0465  two component transcriptional regulator  33.82 
 
 		 239 aa  114  8.999999999999998e-25  Dinoroseobacter shibae DFL 12  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008825  Mpe_A1151  two-component response regulator  37.05 
 
 		 248 aa  112  5e-24  Methylibium petroleiphilum PM1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010717  PXO_02404  transcriptional regulator LuxR/uhpA family  35.32 
 
 		 218 aa  111  8.000000000000001e-24  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  1  n/a   
 
 
-
 
NC_009620  Smed_3954  two component LuxR family transcriptional regulator  31.55 
 
 		 229 aa  111  9e-24  Sinorhizobium medicae WSM419  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010725  Mpop_4737  two component transcriptional regulator, LuxR family  34.3 
 
 		 241 aa  110  1.0000000000000001e-23  Methylobacterium populi BJ001  Bacteria  normal  1  normal  0.0133592 
 
 
-
 
NC_011071  Smal_3356  two component transcriptional regulator, LuxR family  35.64 
 
 		 216 aa  109  3e-23  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.334369  normal  1 
 
 
-
 
NC_009972  Haur_1600  two component LuxR family transcriptional regulator  35.47 
 
 		 207 aa  109  3e-23  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  1  n/a   
 
 
-
 
NC_004578  PSPTO_4027  DNA-binding response regulator, LuxR family  34.98 
 
 		 215 aa  108  4.0000000000000004e-23  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  1  n/a   
 
 
-
 
NC_012560  Avin_38490  Response regulator, LuxR family  35.47 
 
 		 215 aa  108  5e-23  Azotobacter vinelandii DJ  Bacteria  normal  1  n/a   
 
 
-
 
NC_010002  Daci_2921  two component LuxR family transcriptional regulator  36.32 
 
 		 229 aa  108  6e-23  Delftia acidovorans SPH-1  Bacteria  normal  1  normal  0.190475 
 
 
-
 
NC_010511  M446_2941  two component LuxR family transcriptional regulator  34.65 
 
 		 251 aa  108  9.000000000000001e-23  Methylobacterium sp. 4-46  Bacteria  normal  0.80826  normal  0.0563961 
 
 
-
 
NC_009656  PSPA7_1537  putative two-component response regulator  33.33 
 
 		 217 aa  107  1e-22  Pseudomonas aeruginosa PA7  Bacteria  normal  1  n/a   
 
 
-
 
NC_007005  Psyr_1384  LuxR response regulator receiver  34.48 
 
 		 215 aa  107  1e-22  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008463  PA14_17670  LuxR family transcriptional regulator  33.33 
 
 		 217 aa  107  1e-22  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010511  M446_0625  two component LuxR family transcriptional regulator  34.74 
 
 		 221 aa  106  3e-22  Methylobacterium sp. 4-46  Bacteria  normal  0.793996  hitchhiker  0.00440064 
 
 
-
 
NC_007493  RSP_2591  two component LuxR family transcriptional regulator  32.52 
 
 		 235 aa  106  3e-22  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.211381  n/a   
 
 
-
 
NC_009092  Shew_1545  two component LuxR family transcriptional regulator  30.81 
 
 		 219 aa  105  4e-22  Shewanella loihica PV-4  Bacteria  normal  0.505974  normal  1 
 
 
-
 
NC_009049  Rsph17029_1249  two component LuxR family transcriptional regulator  32.52 
 
 		 235 aa  105  4e-22  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009439  Pmen_1291  two component LuxR family transcriptional regulator  33.81 
 
 		 215 aa  105  5e-22  Pseudomonas mendocina ymp  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010513  Xfasm12_0290  response regulator receiver protein  34.48 
 
 		 210 aa  105  6e-22  Xylella fastidiosa M12  Bacteria  normal  1  n/a   
 
 
-
 
NC_007492  Pfl01_1182  two component LuxR family transcriptional regulator  33 
 
 		 216 aa  105  6e-22  Pseudomonas fluorescens Pf0-1  Bacteria  normal  1  normal  0.192356 
 
 
-
 
NC_007963  Csal_0866  two component LuxR family transcriptional regulator  32.84 
 
 		 220 aa  105  6e-22  Chromohalobacter salexigens DSM 3043  Bacteria  normal  1  n/a   
 
 
-
 
NC_009428  Rsph17025_1932  two component LuxR family transcriptional regulator  32.5 
 
 		 236 aa  105  7e-22  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011894  Mnod_1543  two component transcriptional regulator, LuxR family  33.8 
 
 		 221 aa  105  7e-22  Methylobacterium nodulans ORS 2060  Bacteria  normal  1  n/a   
 
 
-
 
NC_007298  Daro_0264  two component LuxR family transcriptional regulator  34.7 
 
 		 221 aa  104  8e-22  Dechloromonas aromatica RCB  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009485  BBta_0852  two component LuxR family transcriptional regulator  32.06 
 
 		 224 aa  105  8e-22  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.852842  normal  0.596615 
 
 
-
 
NC_011894  Mnod_4192  two component transcriptional regulator, LuxR family  33.66 
 
 		 251 aa  104  9e-22  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.270399  n/a   
 
 
-
 
NC_008228  Patl_1870  two component LuxR family transcriptional regulator  28.16 
 
 		 218 aa  104  1e-21  Pseudoalteromonas atlantica T6c  Bacteria  normal  1  n/a   
 
 
-
 
NC_010172  Mext_4220  response regulator receiver  33.66 
 
 		 244 aa  103  2e-21  Methylobacterium extorquens PA1  Bacteria  normal  1  normal  0.89842 
 
 
-
 
NC_009457  VC0395_A2275  LuxR family transcriptional regulator  29.61 
 
 		 209 aa  103  2e-21  Vibrio cholerae O395  Bacteria  normal  0.314776  n/a   
 
 
-
 
NC_011757  Mchl_4590  two component transcriptional regulator, LuxR family  33.66 
 
 		 244 aa  103  2e-21  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.590508  normal  0.147521 
 
 
-
 
NC_010577  XfasM23_0261  two component LuxR family transcriptional regulator  33 
 
 		 210 aa  102  3e-21  Xylella fastidiosa M23  Bacteria  normal  0.574059  n/a   
 
 
-
 
NC_010501  PputW619_4024  two component LuxR family transcriptional regulator  34.43 
 
 		 216 aa  102  6e-21  Pseudomonas putida W619  Bacteria  normal  1  hitchhiker  0.00000136895 
 
 
-
 
NC_009511  Swit_0694  two component LuxR family transcriptional regulator  32.26 
 
 		 252 aa  101  7e-21  Sphingomonas wittichii RW1  Bacteria  normal  0.770061  normal  0.351457 
 
 
-
 
NC_011138  MADE_02155  putative regulator in two-component regulatory system ; LuxR family protein  31.46 
 
 		 211 aa  101  1e-20  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  1  n/a   
 
 
-
 
NC_010524  Lcho_1574  two component LuxR family transcriptional regulator  34.12 
 
 		 219 aa  100  1e-20  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.347453 
 
 
-
 
NC_008577  Shewana3_3459  two component LuxR family transcriptional regulator  32.32 
 
 		 223 aa  100  1e-20  Shewanella sp. ANA-3  Bacteria  normal  0.306063  normal  0.532773 
 
 
-
 
NC_010322  PputGB1_1237  two component LuxR family transcriptional regulator  32.51 
 
 		 216 aa  100  2e-20  Pseudomonas putida GB-1  Bacteria  normal  1  hitchhiker  0.00000000317123 
 
 
-
 
NC_013456  VEA_002211  transcriptional regulator LuxR family  32.52 
 
 		 209 aa  100  2e-20  Vibrio sp. Ex25  Bacteria  normal  1  n/a   
 
 
-
 
NC_002947  PP_1635  LuxR family two component transcriptional regulator  34.47 
 
 		 216 aa  99.8  3e-20  Pseudomonas putida KT2440  Bacteria  normal  1  normal  0.0994806 
 
 
-
 
NC_009512  Pput_4082  two component LuxR family transcriptional regulator  34.47 
 
 		 216 aa  99.8  3e-20  Pseudomonas putida F1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008782  Ajs_0555  two component LuxR family transcriptional regulator  35.05 
 
 		 232 aa  99.4  3e-20  Acidovorax sp. JS42  Bacteria  normal  0.173401  normal  0.808062 
 
 
-
 
NC_007912  Sde_1571  XRE family transcriptional regulator  30.56 
 
 		 227 aa  99.8  3e-20  Saccharophagus degradans 2-40  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008321  Shewmr4_3283  two component LuxR family transcriptional regulator  32.32 
 
 		 223 aa  99.8  3e-20  Shewanella sp. MR-4  Bacteria  normal  1  normal  0.335218 
 
 
-
 
NC_008322  Shewmr7_0664  two component LuxR family transcriptional regulator  31.82 
 
 		 223 aa  99.8  3e-20  Shewanella sp. MR-7  Bacteria  normal  1  normal  0.358413 
 
 
-
 
NC_010717  PXO_03258  two-component system regulatory protein  31.46 
 
 		 222 aa  99.4  4e-20  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  1  n/a   
 
 
-
 
NC_010505  Mrad2831_2408  two component LuxR family transcriptional regulator  34.63 
 
 		 219 aa  99.4  4e-20  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.0426941  normal  0.882432 
 
 
-
 
NC_011071  Smal_3975  two component transcriptional regulator, LuxR family  31.92 
 
 		 221 aa  99.4  4e-20  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.0482097  normal  0.237128 
 
 
-
 
NC_011992  Dtpsy_0029  two component transcriptional regulator, LuxR family  33.83 
 
 		 214 aa  99.4  4e-20  Acidovorax ebreus TPSY  Bacteria  normal  1  n/a   
 
 
-
 
NC_008782  Ajs_0011  two component LuxR family transcriptional regulator  33.83 
 
 		 214 aa  99.4  4e-20  Acidovorax sp. JS42  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008700  Sama_2076  response regulator receiver protein  28.77 
 
 		 238 aa  99  5e-20  Shewanella amazonensis SB2B  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010506  Swoo_2721  two component LuxR family transcriptional regulator  28.77 
 
 		 219 aa  98.6  6e-20  Shewanella woodyi ATCC 51908  Bacteria  normal  1  hitchhiker  0.001499 
 
 
-
 
NC_003910  CPS_1932  DNA-binding response regulator  29.13 
 
 		 219 aa  97.8  1e-19  Colwellia psychrerythraea 34H  Bacteria  decreased coverage  0.00601791  n/a   
 
 
-
 
NC_013947  Snas_5595  two component transcriptional regulator, LuxR family  36.36 
 
 		 215 aa  97.4  1e-19  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007925  RPC_4822  two component LuxR family transcriptional regulator  31.68 
 
 		 223 aa  97.8  1e-19  Rhodopseudomonas palustris BisB18  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008228  Patl_4028  two component LuxR family transcriptional regulator  30 
 
 		 212 aa  98.2  1e-19  Pseudoalteromonas atlantica T6c  Bacteria  normal  1  n/a   
 
 
-
 
NC_009783  VIBHAR_00157  transcriptional regulator LuxR  30.52 
 
 		 211 aa  97.8  1e-19  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_010510  Mrad2831_5839  two component LuxR family transcriptional regulator  32.7 
 
 		 198 aa  97.4  1e-19  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.242407  hitchhiker  0.00194364 
 
 
-
 
NC_011662  Tmz1t_4012  transcriptional regulator NarL  34.3 
 
 		 214 aa  97.4  1e-19  Thauera sp. MZ1T  Bacteria  normal  1  n/a   
 
 
-
 
NC_004578  PSPTO_0897  DNA-binding response regulator, LuxR family  32 
 
 		 207 aa  97.4  2e-19  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  1  n/a   
 
 
-
 
NC_007958  RPD_0836  LuxR family two component transcriptional regulator  32.18 
 
 		 224 aa  96.7  2e-19  Rhodopseudomonas palustris BisB5  Bacteria  normal  1  normal  0.0588074 
 
 
-
 
NC_008322  Shewmr7_1663  two component LuxR family transcriptional regulator  30.05 
 
 		 220 aa  97.1  2e-19  Shewanella sp. MR-7  Bacteria  normal  0.0154836  unclonable  0.0000152825 
 
 
-
 
NC_008700  Sama_0522  response regulator receiver protein  30.81 
 
 		 223 aa  97.1  2e-19  Shewanella amazonensis SB2B  Bacteria  normal  1  normal  0.211294 
 
 
-
 
NC_008321  Shewmr4_1588  two component LuxR family transcriptional regulator  30.05 
 
 		 220 aa  96.7  3e-19  Shewanella sp. MR-4  Bacteria  normal  0.0618082  normal  0.0591517 
 
 
-
 
NC_008577  Shewana3_1732  two component LuxR family transcriptional regulator  29.9 
 
 		 220 aa  96.7  3e-19  Shewanella sp. ANA-3  Bacteria  hitchhiker  0.0049943  normal  0.183248 
 
 
-
 
NC_013204  Elen_0565  two component transcriptional regulator, LuxR family  33.02 
 
 		 213 aa  95.9  4e-19  Eggerthella lenta DSM 2243  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010506  Swoo_2245  two component LuxR family transcriptional regulator  29.61 
 
 		 218 aa  95.9  4e-19  Shewanella woodyi ATCC 51908  Bacteria  hitchhiker  0.00227369  normal  0.0543921 
 
 
-
 
NC_013205  Aaci_0516  two component transcriptional regulator, LuxR family  32.04 
 
 		 231 aa  95.9  4e-19  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  1  n/a   
 
 
-
 
NC_009052  Sbal_2493  two component LuxR family transcriptional regulator  29.9 
 
 		 220 aa  95.9  4e-19  Shewanella baltica OS155  Bacteria  normal  1  n/a   
 
 
-
 
NC_008345  Sfri_3170  two component transcriptional regulator, LuxR family protein  29.95 
 
 		 227 aa  95.9  4e-19  Shewanella frigidimarina NCIMB 400  Bacteria  normal  1  n/a   
 
 
-
 
NC_009438  Sputcn32_2247  two component LuxR family transcriptional regulator  30.73 
 
 		 220 aa  95.9  4e-19  Shewanella putrefaciens CN-32  Bacteria  normal  0.998494  n/a   
 
 
-
 
NC_009665  Shew185_2486  two component LuxR family transcriptional regulator  29.9 
 
 		 220 aa  95.9  4e-19  Shewanella baltica OS185  Bacteria  normal  0.637953  n/a   
 
 
-
 
NC_010681  Bphyt_2130  two component transcriptional regulator, LuxR family  30.88 
 
 		 239 aa  95.9  5e-19  Burkholderia phytofirmans PsJN  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007778  RPB_4565  two component LuxR family transcriptional regulator  31.68 
 
 		 224 aa  95.9  5e-19  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.156913  normal  1 
 
 
-
 
NC_008740  Maqu_2218  two component LuxR family transcriptional regulator  28.64 
 
 		 221 aa  95.5  6e-19  Marinobacter aquaeolei VT8  Bacteria  normal  1  n/a   
 
 
-
 
NC_013595  Sros_6211  response regulator receiver protein  33.5 
 
 		 239 aa  95.5  6e-19  Streptosporangium roseum DSM 43021  Bacteria  normal  1  normal  0.377169 
 
 
-
 
NC_013595  Sros_1910  response regulator receiver protein  37.44 
 
 		 226 aa  94.7  9e-19  Streptosporangium roseum DSM 43021  Bacteria  normal  0.238062  normal  0.36963 
 
 
-
 
NC_009997  Sbal195_2606  two component LuxR family transcriptional regulator  28.92 
 
 		 220 aa  94.7  9e-19  Shewanella baltica OS195  Bacteria  hitchhiker  0.00642184  hitchhiker  0.00275886 
 
 
-
 
NC_004347  SO_2648  LuxR family DNA-binding response regulator  29.9 
 
 		 220 aa  94.4  1e-18  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009831  Ssed_1867  two component LuxR family transcriptional regulator  28.97 
 
 		 219 aa  94.4  1e-18  Shewanella sediminis HAW-EB3  Bacteria  hitchhiker  0.00198288  hitchhiker  0.000309651 
 
 
-
 
NC_011663  Sbal223_1858  two component transcriptional regulator, LuxR family  29.41 
 
 		 220 aa  94.4  1e-18  Shewanella baltica OS223  Bacteria  decreased coverage  0.00870294  decreased coverage  0.00000000166193 
 
 
-
 
NC_008781  Pnap_2689  two component LuxR family transcriptional regulator  33.95 
 
 		 224 aa  94.4  1e-18  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.270095  normal  0.632538 
 
 
-
 
NC_008345  Sfri_2305  two component transcriptional regulator, LuxR family protein  26.89 
 
 		 220 aa  93.2  2e-18  Shewanella frigidimarina NCIMB 400  Bacteria  normal  1  n/a   
 
 
-
 
NC_008463  PA14_46360  putative two-component response regulator  31.5 
 
 		 210 aa  94  2e-18  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  1  normal  0.016821 
 
 
-
 
NC_009901  Spea_2554  two component LuxR family transcriptional regulator  28.18 
 
 		 219 aa  93.2  3e-18  Shewanella pealeana ATCC 700345  Bacteria  normal  0.958854  n/a   
 
 
-
 
NC_008699  Noca_2943  two component LuxR family transcriptional regulator  33.49 
 
 		 215 aa  92.8  3e-18  Nocardioides sp. JS614  Bacteria  normal  1  n/a   
 
 
-
 
NC_010086  Bmul_3716  two component LuxR family transcriptional regulator  33.66 
 
 		 209 aa  92.8  4e-18  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.576881  normal  0.099275 
 
 
-
 
NC_009439  Pmen_1943  two component LuxR family transcriptional regulator  32.37 
 
 		 221 aa  92.8  4e-18  Pseudomonas mendocina ymp  Bacteria  normal  0.550145  normal  1 
 
 
-
 
NC_011831  Cagg_2804  two component transcriptional regulator, LuxR family  34.91 
 
 		 216 aa  92.8  4e-18  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.995251  normal  0.311692 
 
 
-
 
NC_008463  PA14_38930  putative transcriptional regulator  33.01 
 
 		 221 aa  92.4  5e-18  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011004  Rpal_0920  two component transcriptional regulator, LuxR family  31.19 
 
 		 225 aa  92.4  5e-18  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.491034  n/a   
 
 
-
 
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