More than 300 homologs were found in PanDaTox collection
for query gene Daci_5980 on replicon NC_010002
Organism: Delftia acidovorans SPH-1



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010002  Daci_5980  two component LuxR family transcriptional regulator  100 
 
 
245 aa  486  1e-136  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.108646 
 
 
-
 
NC_008752  Aave_2497  two component LuxR family transcriptional regulator  46.22 
 
 
229 aa  189  2.9999999999999997e-47  Acidovorax citrulli AAC00-1  Bacteria  hitchhiker  0.000315398  normal  0.0281112 
 
 
-
 
NC_008752  Aave_3591  two component LuxR family transcriptional regulator  46.19 
 
 
240 aa  189  2.9999999999999997e-47  Acidovorax citrulli AAC00-1  Bacteria  normal  0.552533  hitchhiker  0.00313735 
 
 
-
 
NC_009832  Spro_3589  two component LuxR family transcriptional regulator  39.02 
 
 
210 aa  157  2e-37  Serratia proteamaculans 568  Bacteria  normal  0.993543  normal  0.0443312 
 
 
-
 
NC_003295  RSc2455  response regulator VSRC transcription regulator protein  42.72 
 
 
221 aa  147  2.0000000000000003e-34  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_007347  Reut_A2742  LuxR response regulator receiver  41.43 
 
 
219 aa  140  9.999999999999999e-33  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007973  Rmet_2880  two component LuxR family transcriptional regulator  40.95 
 
 
219 aa  140  1.9999999999999998e-32  Cupriavidus metallidurans CH34  Bacteria  normal  normal  0.449931 
 
 
-
 
NC_010682  Rpic_2723  two component transcriptional regulator, LuxR family  42.25 
 
 
221 aa  139  4.999999999999999e-32  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_012856  Rpic12D_2334  two component transcriptional regulator, LuxR family  42.25 
 
 
221 aa  139  4.999999999999999e-32  Ralstonia pickettii 12D  Bacteria  normal  0.477601  normal  0.267999 
 
 
-
 
NC_011899  Hore_21820  two component transcriptional regulator, LuxR family  27.45 
 
 
211 aa  100  1e-20  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_011899  Hore_19700  two component transcriptional regulator, LuxR family  32.02 
 
 
209 aa  100  3e-20  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_007963  Csal_0866  two component LuxR family transcriptional regulator  31.6 
 
 
220 aa  97.8  1e-19  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_1291  two component LuxR family transcriptional regulator  34.63 
 
 
215 aa  96.7  3e-19  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_013235  Namu_2014  two component transcriptional regulator, LuxR family  34.52 
 
 
212 aa  95.5  6e-19  Nakamurella multipartita DSM 44233  Bacteria  normal  0.172206  hitchhiker  0.00394331 
 
 
-
 
NC_012918  GM21_3105  two component transcriptional regulator, LuxR family  33.82 
 
 
223 aa  95.1  9e-19  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_009620  Smed_3954  two component LuxR family transcriptional regulator  31.6 
 
 
229 aa  94.7  1e-18  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_5915  two component transcriptional regulator, LuxR family  31.75 
 
 
207 aa  94.4  1e-18  Chitinophaga pinensis DSM 2588  Bacteria  hitchhiker  0.00974735  normal 
 
 
-
 
NC_011901  Tgr7_2171  two component transcriptional regulator, LuxR family  32.67 
 
 
227 aa  93.2  4e-18  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_009664  Krad_3810  two component transcriptional regulator, LuxR family  30.29 
 
 
236 aa  92.8  4e-18  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.225059  normal  0.0261757 
 
 
-
 
NC_007404  Tbd_2786  two component LuxR family transcriptional regulator  30.65 
 
 
210 aa  92.4  5e-18  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.0443035  normal  0.922606 
 
 
-
 
NC_010623  Bphy_4331  two component LuxR family transcriptional regulator  31.4 
 
 
212 aa  92.4  6e-18  Burkholderia phymatum STM815  Bacteria  normal  0.748519  normal 
 
 
-
 
NC_013739  Cwoe_4163  two component transcriptional regulator, LuxR family  35.56 
 
 
208 aa  92.4  6e-18  Conexibacter woesei DSM 14684  Bacteria  normal  0.296115  normal  0.698078 
 
 
-
 
NC_013235  Namu_2635  two component transcriptional regulator, LuxR family  35.32 
 
 
217 aa  91.7  9e-18  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.0000528497  hitchhiker  0.00476816 
 
 
-
 
NC_013739  Cwoe_2525  two component transcriptional regulator, LuxR family  34.63 
 
 
215 aa  91.7  1e-17  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_012560  Avin_38490  Response regulator, LuxR family  33.5 
 
 
215 aa  91.3  1e-17  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_009511  Swit_0694  two component LuxR family transcriptional regulator  33 
 
 
252 aa  91.3  1e-17  Sphingomonas wittichii RW1  Bacteria  normal  0.770061  normal  0.351457 
 
 
-
 
NC_008825  Mpe_A1151  two-component response regulator  32.59 
 
 
248 aa  91.3  1e-17  Methylibium petroleiphilum PM1  Bacteria  normal  normal 
 
 
-
 
NC_010001  Cphy_3936  two component LuxR family transcriptional regulator  28.43 
 
 
213 aa  90.5  2e-17  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.00507176  n/a   
 
 
-
 
NC_013947  Snas_5595  two component transcriptional regulator, LuxR family  37.32 
 
 
215 aa  90.9  2e-17  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_014210  Ndas_4080  two component transcriptional regulator, LuxR family  32.85 
 
 
241 aa  90.5  2e-17  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.858367 
 
 
-
 
NC_010577  XfasM23_0261  two component LuxR family transcriptional regulator  32.83 
 
 
210 aa  89.4  5e-17  Xylella fastidiosa M23  Bacteria  normal  0.574059  n/a   
 
 
-
 
NC_007952  Bxe_B2928  two component LuxR family transcriptional regulator  32.84 
 
 
213 aa  89.4  5e-17  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_009708  YpsIP31758_1270  nitrate/nitrite response regulator protein NarP  30.69 
 
 
209 aa  89.4  6e-17  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  0.214676  n/a   
 
 
-
 
NC_010513  Xfasm12_0290  response regulator receiver protein  31.47 
 
 
210 aa  88.6  8e-17  Xylella fastidiosa M12  Bacteria  normal  n/a   
 
 
-
 
NC_007644  Moth_0023  two component LuxR family transcriptional regulator  29.7 
 
 
221 aa  87.8  1e-16  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.273145  hitchhiker  0.00000136124 
 
 
-
 
NC_008009  Acid345_1691  two component LuxR family transcriptional regulator  34.52 
 
 
208 aa  88.2  1e-16  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal  0.0637899 
 
 
-
 
NC_012669  Bcav_2188  two component transcriptional regulator, LuxR family  36.04 
 
 
220 aa  88.2  1e-16  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.546074  normal 
 
 
-
 
NC_010505  Mrad2831_4801  two component LuxR family transcriptional regulator  33.84 
 
 
223 aa  87.4  2e-16  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.136897 
 
 
-
 
NC_010625  Bphy_5955  two component LuxR family transcriptional regulator  31.55 
 
 
215 aa  87.4  2e-16  Burkholderia phymatum STM815  Bacteria  normal  normal  0.132796 
 
 
-
 
NC_010322  PputGB1_1237  two component LuxR family transcriptional regulator  31.88 
 
 
216 aa  87.4  2e-16  Pseudomonas putida GB-1  Bacteria  normal  hitchhiker  0.00000000317123 
 
 
-
 
NC_013947  Snas_2469  two component transcriptional regulator, LuxR family  33.98 
 
 
214 aa  87  2e-16  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.126163  normal 
 
 
-
 
NC_014212  Mesil_1051  two component transcriptional regulator, LuxR family  35.07 
 
 
211 aa  87.4  2e-16  Meiothermus silvanus DSM 9946  Bacteria  normal  normal  0.0337978 
 
 
-
 
NC_013172  Bfae_00310  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  33.66 
 
 
213 aa  87  2e-16  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_009436  Ent638_0993  transcriptional regulator FimZ  29.15 
 
 
210 aa  87  2e-16  Enterobacter sp. 638  Bacteria  normal  hitchhiker  0.000287084 
 
 
-
 
NC_011149  SeAg_B0595  transcriptional regulator FimZ  27.94 
 
 
210 aa  87  3e-16  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.447967  n/a   
 
 
-
 
NC_010159  YpAngola_A2794  nitrate/nitrite response regulator protein NarP  30.2 
 
 
209 aa  86.7  3e-16  Yersinia pestis Angola  Bacteria  normal  normal  0.0858473 
 
 
-
 
NC_010465  YPK_1384  two component LuxR family transcriptional regulator  30.2 
 
 
209 aa  86.7  3e-16  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_011205  SeD_A0598  transcriptional regulator FimZ  27.94 
 
 
210 aa  87  3e-16  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal  0.110504 
 
 
-
 
NC_002939  GSU3229  LuxR family DNA-binding response regulator  29.63 
 
 
229 aa  86.7  4e-16  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_008699  Noca_1438  response regulator receiver  28.84 
 
 
213 aa  86.3  4e-16  Nocardioides sp. JS614  Bacteria  normal  0.494689  n/a   
 
 
-
 
NC_010322  PputGB1_1667  two component LuxR family transcriptional regulator  28.92 
 
 
219 aa  85.9  5e-16  Pseudomonas putida GB-1  Bacteria  normal  normal  0.869411 
 
 
-
 
NC_013521  Sked_29940  two component transcriptional regulator, LuxR family  34.65 
 
 
234 aa  86.3  5e-16  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.683883 
 
 
-
 
NC_013385  Adeg_1034  two component transcriptional regulator, LuxR family  31.53 
 
 
213 aa  85.9  6e-16  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_011083  SeHA_C0659  transcriptional regulator FimZ  28.43 
 
 
210 aa  85.9  6e-16  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.611229  normal 
 
 
-
 
NC_010676  Bphyt_6883  two component transcriptional regulator, LuxR family  31.66 
 
 
213 aa  85.5  6e-16  Burkholderia phytofirmans PsJN  Bacteria  normal  0.239531  normal  0.170628 
 
 
-
 
NC_011662  Tmz1t_4012  transcriptional regulator NarL  30.14 
 
 
214 aa  85.5  6e-16  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_011080  SNSL254_A0602  transcriptional regulator FimZ  28.43 
 
 
210 aa  85.9  6e-16  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.379869  normal  0.0923244 
 
 
-
 
NC_011071  Smal_3356  two component transcriptional regulator, LuxR family  33.17 
 
 
216 aa  85.5  6e-16  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.334369  normal 
 
 
-
 
NC_011758  Mchl_5446  two component transcriptional regulator, LuxR family  33.5 
 
 
218 aa  85.9  6e-16  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.26634  normal 
 
 
-
 
NC_011094  SeSA_A0594  transcriptional regulator FimZ  28.43 
 
 
210 aa  85.9  6e-16  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.627077  hitchhiker  0.00790766 
 
 
-
 
NC_002947  PP_1635  LuxR family two component transcriptional regulator  32.68 
 
 
216 aa  85.5  7e-16  Pseudomonas putida KT2440  Bacteria  normal  normal  0.0994806 
 
 
-
 
NC_008009  Acid345_0972  two component LuxR family transcriptional regulator  26.98 
 
 
227 aa  85.5  7e-16  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.299836  normal  0.0302219 
 
 
-
 
NC_009972  Haur_4648  two component LuxR family transcriptional regulator  33.33 
 
 
219 aa  85.5  7e-16  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_014165  Tbis_0228  LuxR family two component transcriptional regulator  32.83 
 
 
206 aa  85.5  7e-16  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_4082  two component LuxR family transcriptional regulator  32.68 
 
 
216 aa  85.5  7e-16  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_008463  PA14_17670  LuxR family transcriptional regulator  31.9 
 
 
217 aa  85.5  8e-16  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_1537  putative two-component response regulator  31.9 
 
 
217 aa  85.5  8e-16  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_1563  two component LuxR family transcriptional regulator  30.26 
 
 
214 aa  85.1  8e-16  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.241819 
 
 
-
 
NC_004578  PSPTO_4027  DNA-binding response regulator, LuxR family  31.22 
 
 
215 aa  84.7  0.000000000000001  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_009512  Pput_3615  two component LuxR family transcriptional regulator  29.41 
 
 
219 aa  85.1  0.000000000000001  Pseudomonas putida F1  Bacteria  normal  0.378192  normal  0.274637 
 
 
-
 
NC_007974  Rmet_5940  LuxR family response regulator  28.93 
 
 
220 aa  85.1  0.000000000000001  Cupriavidus metallidurans CH34  Bacteria  hitchhiker  0.000000781929  normal 
 
 
-
 
NC_010501  PputW619_4024  two component LuxR family transcriptional regulator  30.1 
 
 
216 aa  84  0.000000000000002  Pseudomonas putida W619  Bacteria  normal  hitchhiker  0.00000136895 
 
 
-
 
NC_002947  PP_2126  LuxR family DNA-binding response regulator  30.88 
 
 
219 aa  84.3  0.000000000000002  Pseudomonas putida KT2440  Bacteria  normal  0.118459  normal  0.107719 
 
 
-
 
NC_010510  Mrad2831_5893  two component LuxR family transcriptional regulator  32.27 
 
 
219 aa  84  0.000000000000002  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.125381 
 
 
-
 
NC_007005  Psyr_1384  LuxR response regulator receiver  31.22 
 
 
215 aa  84  0.000000000000002  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_013159  Svir_39510  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  33.33 
 
 
216 aa  84  0.000000000000002  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal  0.657091 
 
 
-
 
NC_010501  PputW619_1643  two component LuxR family transcriptional regulator  30.46 
 
 
219 aa  84  0.000000000000002  Pseudomonas putida W619  Bacteria  normal  0.118638  normal 
 
 
-
 
NC_008309  HS_0042  nitrate/nitrite response regulator protein  31.84 
 
 
209 aa  84.3  0.000000000000002  Haemophilus somnus 129PT  Bacteria  normal  n/a   
 
 
-
 
NC_013501  Rmar_2437  two component transcriptional regulator, LuxR family  31.66 
 
 
218 aa  84  0.000000000000002  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_008782  Ajs_0555  two component LuxR family transcriptional regulator  33 
 
 
232 aa  84  0.000000000000002  Acidovorax sp. JS42  Bacteria  normal  0.173401  normal  0.808062 
 
 
-
 
NC_009012  Cthe_1267  two component LuxR family transcriptional regulator  27.14 
 
 
216 aa  84.3  0.000000000000002  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_5512  two component LuxR family transcriptional regulator  31.71 
 
 
250 aa  84.3  0.000000000000002  Frankia sp. EAN1pec  Bacteria  normal  normal  0.631776 
 
 
-
 
NC_011369  Rleg2_1389  two component transcriptional regulator, LuxR family  32.85 
 
 
206 aa  84  0.000000000000002  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.744509  normal 
 
 
-
 
NC_009379  Pnuc_1808  two component LuxR family transcriptional regulator  26.73 
 
 
207 aa  84  0.000000000000002  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  hitchhiker  0.000516369  n/a   
 
 
-
 
NC_013595  Sros_3331  response regulator receiver protein  33.17 
 
 
227 aa  83.2  0.000000000000003  Streptosporangium roseum DSM 43021  Bacteria  normal  0.832029  normal  0.250763 
 
 
-
 
NC_007348  Reut_B4470  two component LuxR family transcriptional regulator  27.27 
 
 
232 aa  83.6  0.000000000000003  Ralstonia eutropha JMP134  Bacteria  normal  0.370568  n/a   
 
 
-
 
NC_007492  Pfl01_1863  two component LuxR family transcriptional regulator  30.93 
 
 
209 aa  83.6  0.000000000000003  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.207146  normal 
 
 
-
 
NC_011729  PCC7424_0807  two component transcriptional regulator, LuxR family  25.85 
 
 
228 aa  83.2  0.000000000000003  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.218712 
 
 
-
 
NC_009921  Franean1_5840  two component LuxR family transcriptional regulator  27.67 
 
 
237 aa  83.6  0.000000000000003  Frankia sp. EAN1pec  Bacteria  normal  0.0206065  normal  0.380036 
 
 
-
 
NC_010322  PputGB1_4322  two component LuxR family transcriptional regulator  28.79 
 
 
207 aa  83.2  0.000000000000003  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_7055  two component transcriptional regulator, LuxR family  35.32 
 
 
219 aa  83.2  0.000000000000003  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_3526  DNA-binding response regulator, LuxR family  29.61 
 
 
220 aa  82.8  0.000000000000004  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.0134281  n/a   
 
 
-
 
NC_009832  Spro_2900  transcriptional regulator NarL  31.07 
 
 
216 aa  83.2  0.000000000000004  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_4197  two component LuxR family transcriptional regulator  32 
 
 
230 aa  83.2  0.000000000000004  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.182672  normal  0.341651 
 
 
-
 
NC_009632  SaurJH1_1972  response regulator receiver  28.22 
 
 
209 aa  83.2  0.000000000000004  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  n/a   
 
 
-
 
NC_007973  Rmet_0459  two component LuxR family transcriptional regulator  34.65 
 
 
207 aa  83.2  0.000000000000004  Cupriavidus metallidurans CH34  Bacteria  normal  0.957088  normal 
 
 
-
 
NC_013235  Namu_4606  two component transcriptional regulator, LuxR family  33.97 
 
 
207 aa  83.2  0.000000000000004  Nakamurella multipartita DSM 44233  Bacteria  normal  normal  0.296562 
 
 
-
 
NC_009487  SaurJH9_1938  two component LuxR family transcriptional regulator  28.22 
 
 
209 aa  83.2  0.000000000000004  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_1119  two component LuxR family transcriptional regulator  29.15 
 
 
208 aa  82.8  0.000000000000004  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_7346  two component transcriptional regulator, LuxR family  35.78 
 
 
211 aa  83.2  0.000000000000004  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.0451998 
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>