More than 300 homologs were found in PanDaTox collection
for query gene Plav_2326 on replicon NC_009719
Organism: Parvibaculum lavamentivorans DS-1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009719  Plav_2326  two component LuxR family transcriptional regulator  100 
 
 
210 aa  406  1.0000000000000001e-112  Parvibaculum lavamentivorans DS-1  Bacteria  normal  hitchhiker  0.000518478 
 
 
-
 
NC_009719  Plav_3606  two component LuxR family transcriptional regulator  84.36 
 
 
208 aa  327  1.0000000000000001e-88  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal 
 
 
-
 
NC_008687  Pden_4349  two component LuxR family transcriptional regulator  55.78 
 
 
206 aa  213  1.9999999999999998e-54  Paracoccus denitrificans PD1222  Bacteria  normal  0.20794  normal  0.534464 
 
 
-
 
NC_009439  Pmen_4040  two component LuxR family transcriptional regulator  54.77 
 
 
216 aa  204  6e-52  Pseudomonas mendocina ymp  Bacteria  normal  0.56786  normal 
 
 
-
 
NC_004578  PSPTO_0897  DNA-binding response regulator, LuxR family  53.69 
 
 
207 aa  197  1.0000000000000001e-49  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_3254  two component LuxR family transcriptional regulator  53.23 
 
 
201 aa  196  3e-49  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.49762 
 
 
-
 
NC_008463  PA14_46360  putative two-component response regulator  52.5 
 
 
210 aa  183  2.0000000000000003e-45  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.016821 
 
 
-
 
NC_009656  PSPA7_3950  LuxR family DNA-binding response regulator  50.5 
 
 
210 aa  178  4e-44  Pseudomonas aeruginosa PA7  Bacteria  normal  0.331441  n/a   
 
 
-
 
NC_009656  PSPA7_2885  putative transcriptional regulator  48.5 
 
 
213 aa  176  2e-43  Pseudomonas aeruginosa PA7  Bacteria  normal  0.115145  n/a   
 
 
-
 
NC_010505  Mrad2831_1452  two component LuxR family transcriptional regulator  54.04 
 
 
210 aa  174  9e-43  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  hitchhiker  0.0000890026 
 
 
-
 
NC_008463  PA14_33920  putative transcriptional regulator  47.55 
 
 
213 aa  160  1e-38  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.100556  normal  0.165827 
 
 
-
 
NC_009425  Ent638_4204  two component LuxR family transcriptional regulator  42.13 
 
 
202 aa  158  7e-38  Enterobacter sp. 638  Bacteria  hitchhiker  0.00789571  normal 
 
 
-
 
NC_011988  Avi_5188  two component response regulator  42.25 
 
 
220 aa  157  1e-37  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_0852  two component LuxR family transcriptional regulator  35.78 
 
 
224 aa  129  4.0000000000000003e-29  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.852842  normal  0.596615 
 
 
-
 
NC_011071  Smal_3975  two component transcriptional regulator, LuxR family  33.33 
 
 
221 aa  123  2e-27  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.0482097  normal  0.237128 
 
 
-
 
NC_010717  PXO_03258  two-component system regulatory protein  32.84 
 
 
222 aa  122  4e-27  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_4822  two component LuxR family transcriptional regulator  37.75 
 
 
223 aa  120  9.999999999999999e-27  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_009636  Smed_0164  two component LuxR family transcriptional regulator  37.56 
 
 
215 aa  118  6e-26  Sinorhizobium medicae WSM419  Bacteria  normal  0.523755  normal 
 
 
-
 
NC_007958  RPD_0836  LuxR family two component transcriptional regulator  38.28 
 
 
224 aa  117  9e-26  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.0588074 
 
 
-
 
NC_007778  RPB_4565  two component LuxR family transcriptional regulator  38.28 
 
 
224 aa  117  1.9999999999999998e-25  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.156913  normal 
 
 
-
 
NC_007778  RPB_3065  two component LuxR family transcriptional regulator  36.54 
 
 
217 aa  115  3.9999999999999997e-25  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_007298  Daro_0264  two component LuxR family transcriptional regulator  32.84 
 
 
221 aa  115  6e-25  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_007963  Csal_0866  two component LuxR family transcriptional regulator  33.65 
 
 
220 aa  112  5e-24  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_008228  Patl_4028  two component LuxR family transcriptional regulator  30.58 
 
 
212 aa  112  5e-24  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_007777  Francci3_1039  two component LuxR family transcriptional regulator  32.86 
 
 
238 aa  111  6e-24  Frankia sp. CcI3  Bacteria  normal  normal  0.135118 
 
 
-
 
NC_007964  Nham_0273  two component LuxR family transcriptional regulator  37.37 
 
 
231 aa  110  1.0000000000000001e-23  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_0920  two component transcriptional regulator, LuxR family  37.8 
 
 
225 aa  110  1.0000000000000001e-23  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.491034  n/a   
 
 
-
 
NC_007643  Rru_A2232  two component LuxR family transcriptional regulator  34.13 
 
 
212 aa  109  2.0000000000000002e-23  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_011369  Rleg2_0190  two component transcriptional regulator, LuxR family  35.55 
 
 
215 aa  110  2.0000000000000002e-23  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_008321  Shewmr4_1588  two component LuxR family transcriptional regulator  30.15 
 
 
220 aa  109  2.0000000000000002e-23  Shewanella sp. MR-4  Bacteria  normal  0.0618082  normal  0.0591517 
 
 
-
 
NC_008700  Sama_0522  response regulator receiver protein  31.36 
 
 
223 aa  110  2.0000000000000002e-23  Shewanella amazonensis SB2B  Bacteria  normal  normal  0.211294 
 
 
-
 
NC_014212  Mesil_1051  two component transcriptional regulator, LuxR family  36.02 
 
 
211 aa  109  3e-23  Meiothermus silvanus DSM 9946  Bacteria  normal  normal  0.0337978 
 
 
-
 
NC_011138  MADE_02260  Response regulator, LuxR family (CheY, HTH domains)  32.09 
 
 
222 aa  109  3e-23  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_007912  Sde_1571  XRE family transcriptional regulator  30.37 
 
 
227 aa  108  4.0000000000000004e-23  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_008321  Shewmr4_3283  two component LuxR family transcriptional regulator  31.63 
 
 
223 aa  108  4.0000000000000004e-23  Shewanella sp. MR-4  Bacteria  normal  normal  0.335218 
 
 
-
 
NC_014165  Tbis_0228  LuxR family two component transcriptional regulator  36.76 
 
 
206 aa  109  4.0000000000000004e-23  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_008577  Shewana3_3459  two component LuxR family transcriptional regulator  31.63 
 
 
223 aa  109  4.0000000000000004e-23  Shewanella sp. ANA-3  Bacteria  normal  0.306063  normal  0.532773 
 
 
-
 
NC_009457  VC0395_A2275  LuxR family transcriptional regulator  30.35 
 
 
209 aa  108  5e-23  Vibrio cholerae O395  Bacteria  normal  0.314776  n/a   
 
 
-
 
NC_010505  Mrad2831_4801  two component LuxR family transcriptional regulator  37.31 
 
 
223 aa  108  6e-23  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.136897 
 
 
-
 
NC_008322  Shewmr7_1663  two component LuxR family transcriptional regulator  29.65 
 
 
220 aa  108  6e-23  Shewanella sp. MR-7  Bacteria  normal  0.0154836  unclonable  0.0000152825 
 
 
-
 
NC_009921  Franean1_5512  two component LuxR family transcriptional regulator  32.86 
 
 
250 aa  108  7.000000000000001e-23  Frankia sp. EAN1pec  Bacteria  normal  normal  0.631776 
 
 
-
 
NC_009438  Sputcn32_2247  two component LuxR family transcriptional regulator  30.65 
 
 
220 aa  108  8.000000000000001e-23  Shewanella putrefaciens CN-32  Bacteria  normal  0.998494  n/a   
 
 
-
 
NC_009511  Swit_0694  two component LuxR family transcriptional regulator  34.13 
 
 
252 aa  107  9.000000000000001e-23  Sphingomonas wittichii RW1  Bacteria  normal  0.770061  normal  0.351457 
 
 
-
 
NC_011989  Avi_0584  two component response regulator  33.66 
 
 
215 aa  107  9.000000000000001e-23  Agrobacterium vitis S4  Bacteria  normal  0.566414  n/a   
 
 
-
 
NC_014212  Mesil_2848  two component transcriptional regulator, LuxR family  34.76 
 
 
212 aa  107  1e-22  Meiothermus silvanus DSM 9946  Bacteria  normal  0.857037  normal  0.944506 
 
 
-
 
NC_011899  Hore_21820  two component transcriptional regulator, LuxR family  32.86 
 
 
211 aa  107  1e-22  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_007643  Rru_A3229  two component LuxR family transcriptional regulator  31.36 
 
 
224 aa  106  2e-22  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_008322  Shewmr7_0664  two component LuxR family transcriptional regulator  30.7 
 
 
223 aa  106  2e-22  Shewanella sp. MR-7  Bacteria  normal  normal  0.358413 
 
 
-
 
NC_008577  Shewana3_1732  two component LuxR family transcriptional regulator  29.65 
 
 
220 aa  107  2e-22  Shewanella sp. ANA-3  Bacteria  hitchhiker  0.0049943  normal  0.183248 
 
 
-
 
NC_011894  Mnod_1110  two component transcriptional regulator, LuxR family  33.99 
 
 
245 aa  106  3e-22  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.686827  n/a   
 
 
-
 
NC_004347  SO_2648  LuxR family DNA-binding response regulator  29.65 
 
 
220 aa  106  3e-22  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009012  Cthe_1267  two component LuxR family transcriptional regulator  29.72 
 
 
216 aa  106  3e-22  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_013525  Tter_0799  two component transcriptional regulator, LuxR family  28.97 
 
 
226 aa  106  3e-22  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_013947  Snas_3745  two component transcriptional regulator, LuxR family  33.82 
 
 
235 aa  106  3e-22  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.627677  normal  0.255424 
 
 
-
 
NC_009092  Shew_1545  two component LuxR family transcriptional regulator  31.66 
 
 
219 aa  106  3e-22  Shewanella loihica PV-4  Bacteria  normal  0.505974  normal 
 
 
-
 
NC_003910  CPS_0937  LuxR family DNA-binding response regulator  31.63 
 
 
223 aa  105  4e-22  Colwellia psychrerythraea 34H  Bacteria  normal  0.715087  n/a   
 
 
-
 
NC_010506  Swoo_2721  two component LuxR family transcriptional regulator  32.34 
 
 
219 aa  105  4e-22  Shewanella woodyi ATCC 51908  Bacteria  normal  hitchhiker  0.001499 
 
 
-
 
NC_008228  Patl_1981  two component LuxR family transcriptional regulator  34.3 
 
 
213 aa  105  4e-22  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.607794  n/a   
 
 
-
 
NC_008345  Sfri_2305  two component transcriptional regulator, LuxR family protein  29.47 
 
 
220 aa  105  4e-22  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_010322  PputGB1_1237  two component LuxR family transcriptional regulator  30.48 
 
 
216 aa  105  5e-22  Pseudomonas putida GB-1  Bacteria  normal  hitchhiker  0.00000000317123 
 
 
-
 
NC_004310  BR0315  LuxR family DNA-binding response regulator  36.68 
 
 
213 aa  105  7e-22  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_009505  BOV_0331  LuxR family DNA-binding response regulator  36.18 
 
 
213 aa  104  9e-22  Brucella ovis ATCC 25840  Bacteria  normal  0.338839  n/a   
 
 
-
 
NC_010510  Mrad2831_5839  two component LuxR family transcriptional regulator  33.97 
 
 
198 aa  104  9e-22  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.242407  hitchhiker  0.00194364 
 
 
-
 
NC_009720  Xaut_1450  two component LuxR family transcriptional regulator  33.33 
 
 
224 aa  104  9e-22  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_010644  Emin_0306  two component LuxR family transcriptional regulator  29.47 
 
 
215 aa  103  1e-21  Elusimicrobium minutum Pei191  Bacteria  unclonable  0.000000000161342  hitchhiker  0.00000159266 
 
 
-
 
NC_010511  M446_2139  two component LuxR family transcriptional regulator  33.66 
 
 
244 aa  103  2e-21  Methylobacterium sp. 4-46  Bacteria  normal  0.0202732  normal  0.168937 
 
 
-
 
NC_008346  Swol_0186  response regulator receiver protein  28.37 
 
 
213 aa  103  2e-21  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  decreased coverage  0.00000327076  n/a   
 
 
-
 
NC_008740  Maqu_2218  two component LuxR family transcriptional regulator  30.5 
 
 
221 aa  103  2e-21  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_011666  Msil_2341  two component transcriptional regulator, LuxR family  33.66 
 
 
209 aa  102  3e-21  Methylocella silvestris BL2  Bacteria  n/a    normal  0.193906 
 
 
-
 
NC_009832  Spro_3490  two component LuxR family transcriptional regulator  30.69 
 
 
210 aa  102  3e-21  Serratia proteamaculans 568  Bacteria  normal  0.0559776  normal 
 
 
-
 
NC_007404  Tbd_2570  two component LuxR family transcriptional regulator  32.18 
 
 
224 aa  102  3e-21  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.282998  normal  0.225314 
 
 
-
 
NC_009664  Krad_2537  two component transcriptional regulator, LuxR family  34.35 
 
 
242 aa  102  3e-21  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_013205  Aaci_0516  two component transcriptional regulator, LuxR family  31.43 
 
 
231 aa  103  3e-21  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_011138  MADE_02155  putative regulator in two-component regulatory system ; LuxR family protein  31.55 
 
 
211 aa  102  5e-21  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_2606  two component LuxR family transcriptional regulator  29.65 
 
 
220 aa  102  5e-21  Shewanella baltica OS195  Bacteria  hitchhiker  0.00642184  hitchhiker  0.00275886 
 
 
-
 
NC_008254  Meso_0596  two component LuxR family transcriptional regulator  32.86 
 
 
228 aa  102  5e-21  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_008309  HS_0042  nitrate/nitrite response regulator protein  31.16 
 
 
209 aa  102  5e-21  Haemophilus somnus 129PT  Bacteria  normal  n/a   
 
 
-
 
NC_008345  Sfri_3170  two component transcriptional regulator, LuxR family protein  29.77 
 
 
227 aa  102  5e-21  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_0508  response regulator receiver protein  35.27 
 
 
212 aa  102  6e-21  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013946  Mrub_1071  two component LuxR family transcriptional regulator  37.07 
 
 
209 aa  101  7e-21  Meiothermus ruber DSM 1279  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_1291  two component LuxR family transcriptional regulator  29.9 
 
 
215 aa  101  7e-21  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_011663  Sbal223_1858  two component transcriptional regulator, LuxR family  29.15 
 
 
220 aa  101  8e-21  Shewanella baltica OS223  Bacteria  decreased coverage  0.00870294  decreased coverage  0.00000000166193 
 
 
-
 
NC_003910  CPS_1932  DNA-binding response regulator  30.65 
 
 
219 aa  101  9e-21  Colwellia psychrerythraea 34H  Bacteria  decreased coverage  0.00601791  n/a   
 
 
-
 
NC_009767  Rcas_4227  two component LuxR family transcriptional regulator  36.71 
 
 
213 aa  100  1e-20  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.624898 
 
 
-
 
NC_012850  Rleg_0219  two component transcriptional regulator, LuxR family  35.07 
 
 
215 aa  101  1e-20  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.463895 
 
 
-
 
NC_009901  Spea_2554  two component LuxR family transcriptional regulator  29.95 
 
 
219 aa  100  1e-20  Shewanella pealeana ATCC 700345  Bacteria  normal  0.958854  n/a   
 
 
-
 
NC_007498  Pcar_0978  two component signal transduction response regulator  32.2 
 
 
223 aa  101  1e-20  Pelobacter carbinolicus DSM 2380  Bacteria  normal  0.0402933  n/a   
 
 
-
 
NC_011884  Cyan7425_1929  two component transcriptional regulator, LuxR family  31.37 
 
 
209 aa  100  1e-20  Cyanothece sp. PCC 7425  Bacteria  normal  0.142226  normal 
 
 
-
 
NC_011894  Mnod_4192  two component transcriptional regulator, LuxR family  32.99 
 
 
251 aa  100  2e-20  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.270399  n/a   
 
 
-
 
NC_009665  Shew185_2486  two component LuxR family transcriptional regulator  30.14 
 
 
220 aa  100  2e-20  Shewanella baltica OS185  Bacteria  normal  0.637953  n/a   
 
 
-
 
NC_009052  Sbal_2493  two component LuxR family transcriptional regulator  30.14 
 
 
220 aa  100  2e-20  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_1229  transcriptional regulator NarL  31.16 
 
 
219 aa  100  2e-20  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_012560  Avin_38490  Response regulator, LuxR family  29.05 
 
 
215 aa  100  2e-20  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_009621  Smed_5114  two component LuxR family transcriptional regulator  32.24 
 
 
230 aa  100  2e-20  Sinorhizobium medicae WSM419  Bacteria  normal  decreased coverage  0.00554548 
 
 
-
 
NC_002976  SERP1384  LuxR family DNA-binding response regulator  29.95 
 
 
207 aa  99.8  3e-20  Staphylococcus epidermidis RP62A  Bacteria  hitchhiker  0.000639089  n/a   
 
 
-
 
NC_011831  Cagg_1346  two component transcriptional regulator, LuxR family  29.17 
 
 
236 aa  99.8  3e-20  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.361751  hitchhiker  0.00000337078 
 
 
-
 
NC_010717  PXO_02404  transcriptional regulator LuxR/uhpA family  31.19 
 
 
218 aa  99.8  3e-20  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_13730  transcriptional regulator NarL  31.16 
 
 
219 aa  99.8  3e-20  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.817999 
 
 
-
 
NC_009667  Oant_0408  two component LuxR family transcriptional regulator  36.18 
 
 
214 aa  99  4e-20  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.82136  n/a   
 
 
-
 
NC_010676  Bphyt_4850  two component transcriptional regulator, LuxR family  29.8 
 
 
257 aa  99.4  4e-20  Burkholderia phytofirmans PsJN  Bacteria  normal  0.0778424  normal  0.0399542 
 
 
-
 
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