More than 300 homologs were found in PanDaTox collection
for query gene Bamb_4255 on replicon NC_008391
Organism: Burkholderia ambifaria AMMD



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_008391  Bamb_4255  LuxR family transcriptional regulator  100 
 
 		 227 aa  459  9.999999999999999e-129  Burkholderia ambifaria AMMD  Bacteria  normal  1  normal  0.0102406 
 
 
-
 
NC_010552  BamMC406_4781  LuxR family transcriptional regulator  98.68 
 
 		 227 aa  455  1e-127  Burkholderia ambifaria MC40-6  Bacteria  normal  0.0502492  normal  1 
 
 
-
 
NC_012856  Rpic12D_1738  two component transcriptional regulator, LuxR family  49.54 
 
 		 219 aa  171  1e-41  Ralstonia pickettii 12D  Bacteria  normal  0.0459515  normal  0.949758 
 
 
-
 
NC_010682  Rpic_2046  two component transcriptional regulator, LuxR family  49.07 
 
 		 219 aa  171  1e-41  Ralstonia pickettii 12J  Bacteria  normal  1  normal  1 
 
 
-
 
NC_012917  PC1_0582  two component transcriptional regulator, LuxR family  31.94 
 
 		 204 aa  102  7e-21  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  1  n/a   
 
 
-
 
NC_009621  Smed_5114  two component LuxR family transcriptional regulator  43.48 
 
 		 230 aa  100  1e-20  Sinorhizobium medicae WSM419  Bacteria  normal  1  decreased coverage  0.00554548 
 
 
-
 
NC_013385  Adeg_1034  two component transcriptional regulator, LuxR family  43.7 
 
 		 213 aa  96.7  3e-19  Ammonifex degensii KC4  Bacteria  normal  1  n/a   
 
 
-
 
NC_008254  Meso_0596  two component LuxR family transcriptional regulator  44.68 
 
 		 228 aa  95.5  6e-19  Chelativorans sp. BNC1  Bacteria  normal  1  n/a   
 
 
-
 
NC_011894  Mnod_1110  two component transcriptional regulator, LuxR family  41.61 
 
 		 245 aa  92.4  5e-18  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.686827  n/a   
 
 
-
 
NC_007643  Rru_A3229  two component LuxR family transcriptional regulator  34.26 
 
 		 224 aa  90.1  3e-17  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  1  n/a   
 
 
-
 
NC_008789  Hhal_1965  two component LuxR family transcriptional regulator  32.06 
 
 		 217 aa  89  6e-17  Halorhodospira halophila SL1  Bacteria  normal  1  n/a   
 
 
-
 
CP001509  ECD_03368  predicted DNA-binding response regulator in two-component regulatory system  28.71 
 
 		 200 aa  88.6  8e-17  Escherichia coli BL21(DE3)  Bacteria  decreased coverage  0.000358261  n/a   
 
 
-
 
CP001637  EcDH1_0193  transcriptional regulator, LuxR family  28.71 
 
 		 200 aa  88.6  8e-17  Escherichia coli DH1  Bacteria  decreased coverage  0.000000210245  n/a   
 
 
-
 
NC_010658  SbBS512_E3925  transcriptional regulator, LuxR family  28.71 
 
 		 200 aa  88.6  8e-17  Shigella boydii CDC 3083-94  Bacteria  normal  0.237516  n/a   
 
 
-
 
NC_009800  EcHS_A3723  LuxR family transcriptional regulator  28.71 
 
 		 200 aa  88.6  8e-17  Escherichia coli HS  Bacteria  normal  1  n/a   
 
 
-
 
NC_009801  EcE24377A_4008  LuxR family transcriptional regulator  28.71 
 
 		 200 aa  88.6  8e-17  Escherichia coli E24377A  Bacteria  normal  1  n/a   
 
 
-
 
NC_012892  B21_03321  hypothetical protein  28.71 
 
 		 200 aa  88.6  8e-17  Escherichia coli BL21  Bacteria  decreased coverage  0.00023179  n/a   
 
 
-
 
NC_010468  EcolC_0197  two component LuxR family transcriptional regulator  28.71 
 
 		 200 aa  88.6  8e-17  Escherichia coli ATCC 8739  Bacteria  decreased coverage  0.000437068  normal  1 
 
 
-
 
NC_010498  EcSMS35_3824  LuxR family transcriptional regulator  28.71 
 
 		 200 aa  87.8  1e-16  Escherichia coli SMS-3-5  Bacteria  normal  1  normal  0.201276 
 
 
-
 
NC_011353  ECH74115_4883  transcriptional regulator, LuxR family  28.71 
 
 		 200 aa  88.2  1e-16  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010511  M446_2139  two component LuxR family transcriptional regulator  39.22 
 
 		 244 aa  85.9  4e-16  Methylobacterium sp. 4-46  Bacteria  normal  0.0202732  normal  0.168937 
 
 
-
 
NC_011666  Msil_2341  two component transcriptional regulator, LuxR family  38.69 
 
 		 209 aa  85.1  8e-16  Methylocella silvestris BL2  Bacteria  n/a    normal  0.193906 
 
 
-
 
NC_011149  SeAg_B3813  putative transcriptional regulator  26.7 
 
 		 200 aa  83.6  0.000000000000002  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  1  n/a   
 
 
-
 
NC_009952  Dshi_0465  two component transcriptional regulator  32.05 
 
 		 239 aa  84  0.000000000000002  Dinoroseobacter shibae DFL 12  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011205  SeD_A3981  putative transcriptional regulator  26.7 
 
 		 200 aa  83.6  0.000000000000002  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  1  normal  0.347336 
 
 
-
 
NC_011083  SeHA_C3921  putative transcriptional regulator  26.7 
 
 		 200 aa  83.6  0.000000000000002  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011094  SeSA_A3800  putative transcriptional regulator  26.7 
 
 		 200 aa  83.6  0.000000000000002  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008254  Meso_0341  two component LuxR family transcriptional regulator  41.8 
 
 		 216 aa  82.8  0.000000000000004  Chelativorans sp. BNC1  Bacteria  normal  1  n/a   
 
 
-
 
NC_014158  Tpau_2414  two component transcriptional regulator, LuxR family  35.56 
 
 		 215 aa  82.4  0.000000000000005  Tsukamurella paurometabola DSM 20162  Bacteria  normal  1  n/a   
 
 
-
 
NC_010172  Mext_3579  regulatory protein LuxR  34.97 
 
 		 213 aa  82  0.000000000000006  Methylobacterium extorquens PA1  Bacteria  normal  0.0227422  normal  1 
 
 
-
 
NC_008010  Dgeo_2486  two component LuxR family transcriptional regulator  30.58 
 
 		 208 aa  82  0.000000000000007  Deinococcus geothermalis DSM 11300  Bacteria  normal  1  n/a   
 
 
-
 
NC_011894  Mnod_3782  two component transcriptional regulator, LuxR family  38.03 
 
 		 223 aa  82  0.000000000000007  Methylobacterium nodulans ORS 2060  Bacteria  normal  1  n/a   
 
 
-
 
NC_013947  Snas_3745  two component transcriptional regulator, LuxR family  40.83 
 
 		 235 aa  81.6  0.000000000000008  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.627677  normal  0.255424 
 
 
-
 
NC_010506  Swoo_2721  two component LuxR family transcriptional regulator  30.33 
 
 		 219 aa  82  0.000000000000008  Shewanella woodyi ATCC 51908  Bacteria  normal  1  hitchhiker  0.001499 
 
 
-
 
NC_009719  Plav_2326  two component LuxR family transcriptional regulator  30.69 
 
 		 210 aa  80.9  0.00000000000001  Parvibaculum lavamentivorans DS-1  Bacteria  normal  1  hitchhiker  0.000518478 
 
 
-
 
NC_007404  Tbd_2570  two component LuxR family transcriptional regulator  37.96 
 
 		 224 aa  81.3  0.00000000000001  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.282998  normal  0.225314 
 
 
-
 
NC_008346  Swol_0186  response regulator receiver protein  34.48 
 
 		 213 aa  80.1  0.00000000000002  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  decreased coverage  0.00000327076  n/a   
 
 
-
 
NC_008700  Sama_2076  response regulator receiver protein  29.91 
 
 		 238 aa  80.1  0.00000000000002  Shewanella amazonensis SB2B  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011901  Tgr7_2171  two component transcriptional regulator, LuxR family  29.6 
 
 		 227 aa  80.1  0.00000000000002  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  1  n/a   
 
 
-
 
NC_010320  Teth514_2042  two component LuxR family transcriptional regulator  30.08 
 
 		 208 aa  80.1  0.00000000000002  Thermoanaerobacter sp. X514  Bacteria  normal  1  n/a   
 
 
-
 
NC_007298  Daro_0834  LuxR response regulator receiver  30.37 
 
 		 221 aa  80.1  0.00000000000003  Dechloromonas aromatica RCB  Bacteria  normal  1  normal  0.0179337 
 
 
-
 
NC_008825  Mpe_A1151  two-component response regulator  34.97 
 
 		 248 aa  79.7  0.00000000000003  Methylibium petroleiphilum PM1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011080  SNSL254_A3878  putative transcriptional regulator  27.75 
 
 		 200 aa  79.7  0.00000000000003  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010571  Oter_3372  two component LuxR family transcriptional regulator  33.81 
 
 		 212 aa  79.3  0.00000000000004  Opitutus terrae PB90-1  Bacteria  normal  1  normal  0.383896 
 
 
-
 
NC_009092  Shew_1545  two component LuxR family transcriptional regulator  37.23 
 
 		 219 aa  79.7  0.00000000000004  Shewanella loihica PV-4  Bacteria  normal  0.505974  normal  1 
 
 
-
 
NC_009767  Rcas_4227  two component LuxR family transcriptional regulator  34.81 
 
 		 213 aa  79.3  0.00000000000005  Roseiflexus castenholzii DSM 13941  Bacteria  normal  1  normal  0.624898 
 
 
-
 
NC_009656  PSPA7_1229  transcriptional regulator NarL  29.13 
 
 		 219 aa  79  0.00000000000005  Pseudomonas aeruginosa PA7  Bacteria  normal  1  n/a   
 
 
-
 
NC_011663  Sbal223_1858  two component transcriptional regulator, LuxR family  34.93 
 
 		 220 aa  79  0.00000000000006  Shewanella baltica OS223  Bacteria  decreased coverage  0.00870294  decreased coverage  0.00000000166193 
 
 
-
 
NC_009620  Smed_3954  two component LuxR family transcriptional regulator  33.79 
 
 		 229 aa  79  0.00000000000006  Sinorhizobium medicae WSM419  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009438  Sputcn32_2247  two component LuxR family transcriptional regulator  28.17 
 
 		 220 aa  79  0.00000000000006  Shewanella putrefaciens CN-32  Bacteria  normal  0.998494  n/a   
 
 
-
 
NC_009997  Sbal195_2606  two component LuxR family transcriptional regulator  28.51 
 
 		 220 aa  79  0.00000000000006  Shewanella baltica OS195  Bacteria  hitchhiker  0.00642184  hitchhiker  0.00275886 
 
 
-
 
NC_009665  Shew185_2486  two component LuxR family transcriptional regulator  34.25 
 
 		 220 aa  78.6  0.00000000000008  Shewanella baltica OS185  Bacteria  normal  0.637953  n/a   
 
 
-
 
NC_008577  Shewana3_1732  two component LuxR family transcriptional regulator  28.57 
 
 		 220 aa  78.6  0.00000000000008  Shewanella sp. ANA-3  Bacteria  hitchhiker  0.0049943  normal  0.183248 
 
 
-
 
NC_009052  Sbal_2493  two component LuxR family transcriptional regulator  34.25 
 
 		 220 aa  78.6  0.00000000000008  Shewanella baltica OS155  Bacteria  normal  1  n/a   
 
 
-
 
NC_013131  Caci_5202  two component transcriptional regulator, LuxR family  35.33 
 
 		 225 aa  78.2  0.00000000000009  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.677169  normal  0.920773 
 
 
-
 
NC_009831  Ssed_1867  two component LuxR family transcriptional regulator  30.52 
 
 		 219 aa  78.2  0.00000000000009  Shewanella sediminis HAW-EB3  Bacteria  hitchhiker  0.00198288  hitchhiker  0.000309651 
 
 
-
 
NC_010511  M446_4981  two component LuxR family transcriptional regulator  36.91 
 
 		 244 aa  78.2  0.00000000000009  Methylobacterium sp. 4-46  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011071  Smal_3975  two component transcriptional regulator, LuxR family  38.93 
 
 		 221 aa  77.8  0.0000000000001  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.0482097  normal  0.237128 
 
 
-
 
NC_009511  Swit_0694  two component LuxR family transcriptional regulator  29.72 
 
 		 252 aa  77.8  0.0000000000001  Sphingomonas wittichii RW1  Bacteria  normal  0.770061  normal  0.351457 
 
 
-
 
NC_009901  Spea_2554  two component LuxR family transcriptional regulator  28.91 
 
 		 219 aa  77.8  0.0000000000001  Shewanella pealeana ATCC 700345  Bacteria  normal  0.958854  n/a   
 
 
-
 
NC_011831  Cagg_1769  two component transcriptional regulator, LuxR family  28.63 
 
 		 219 aa  77.8  0.0000000000001  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.221401  normal  0.0578747 
 
 
-
 
NC_008345  Sfri_2305  two component transcriptional regulator, LuxR family protein  35.14 
 
 		 220 aa  78.2  0.0000000000001  Shewanella frigidimarina NCIMB 400  Bacteria  normal  1  n/a   
 
 
-
 
NC_008463  PA14_13730  transcriptional regulator NarL  28.64 
 
 		 219 aa  77.4  0.0000000000001  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  1  normal  0.817999 
 
 
-
 
NC_009720  Xaut_0991  two component LuxR family transcriptional regulator  35.38 
 
 		 210 aa  78.2  0.0000000000001  Xanthobacter autotrophicus Py2  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013131  Caci_6044  two component transcriptional regulator, LuxR family  33.1 
 
 		 226 aa  77  0.0000000000002  Catenulispora acidiphila DSM 44928  Bacteria  normal  1  normal  1 
 
 
-
 
NC_004310  BR0315  LuxR family DNA-binding response regulator  37.41 
 
 		 213 aa  77  0.0000000000002  Brucella suis 1330  Bacteria  normal  1  n/a   
 
 
-
 
NC_004347  SO_2648  LuxR family DNA-binding response regulator  35.17 
 
 		 220 aa  77  0.0000000000002  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_007644  Moth_0975  two component LuxR family transcriptional regulator  32.69 
 
 		 222 aa  77  0.0000000000002  Moorella thermoacetica ATCC 39073  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009636  Smed_0164  two component LuxR family transcriptional regulator  35.25 
 
 		 215 aa  77  0.0000000000002  Sinorhizobium medicae WSM419  Bacteria  normal  0.523755  normal  1 
 
 
-
 
NC_014165  Tbis_0228  LuxR family two component transcriptional regulator  35.21 
 
 		 206 aa  77.4  0.0000000000002  Thermobispora bispora DSM 43833  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011312  VSAL_I2824  transcriptional regulator, LuxR response regulator receiver  34.04 
 
 		 209 aa  77.4  0.0000000000002  Aliivibrio salmonicida LFI1238  Bacteria  normal  1  n/a   
 
 
-
 
NC_008740  Maqu_3089  two component LuxR family transcriptional regulator  27.4 
 
 		 219 aa  77  0.0000000000002  Marinobacter aquaeolei VT8  Bacteria  normal  1  n/a   
 
 
-
 
NC_009505  BOV_0331  LuxR family DNA-binding response regulator  36.69 
 
 		 213 aa  76.6  0.0000000000003  Brucella ovis ATCC 25840  Bacteria  normal  0.338839  n/a   
 
 
-
 
NC_013525  Tter_0799  two component transcriptional regulator, LuxR family  26.82 
 
 		 226 aa  75.9  0.0000000000004  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_002947  PP_2665  LuxR family two component transcriptional regulator  29.55 
 
 		 221 aa  75.9  0.0000000000005  Pseudomonas putida KT2440  Bacteria  normal  0.107491  normal  1 
 
 
-
 
NC_011369  Rleg2_0190  two component transcriptional regulator, LuxR family  35.97 
 
 		 215 aa  75.9  0.0000000000005  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009512  Pput_2173  two component LuxR family transcriptional regulator  29.55 
 
 		 221 aa  75.9  0.0000000000005  Pseudomonas putida F1  Bacteria  normal  0.548338  normal  1 
 
 
-
 
NC_008321  Shewmr4_1588  two component LuxR family transcriptional regulator  35.77 
 
 		 220 aa  75.9  0.0000000000005  Shewanella sp. MR-4  Bacteria  normal  0.0618082  normal  0.0591517 
 
 
-
 
NC_008322  Shewmr7_1663  two component LuxR family transcriptional regulator  35.77 
 
 		 220 aa  75.9  0.0000000000005  Shewanella sp. MR-7  Bacteria  normal  0.0154836  unclonable  0.0000152825 
 
 
-
 
NC_013947  Snas_5788  two component transcriptional regulator, LuxR family  38.66 
 
 		 214 aa  75.9  0.0000000000005  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  1  normal  0.785726 
 
 
-
 
NC_010086  Bmul_3716  two component LuxR family transcriptional regulator  30.43 
 
 		 209 aa  75.5  0.0000000000006  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.576881  normal  0.099275 
 
 
-
 
NC_010322  PputGB1_3138  two component LuxR family transcriptional regulator  29.55 
 
 		 221 aa  75.5  0.0000000000006  Pseudomonas putida GB-1  Bacteria  normal  1  normal  0.892266 
 
 
-
 
NC_010511  M446_3347  two component LuxR family transcriptional regulator  40.15 
 
 		 234 aa  75.5  0.0000000000006  Methylobacterium sp. 4-46  Bacteria  normal  0.563314  normal  1 
 
 
-
 
NC_009664  Krad_3810  two component transcriptional regulator, LuxR family  28.7 
 
 		 236 aa  75.5  0.0000000000007  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.225059  normal  0.0261757 
 
 
-
 
NC_010524  Lcho_1299  two component LuxR family transcriptional regulator  28.68 
 
 		 273 aa  75.1  0.0000000000008  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.0170327 
 
 
-
 
NC_012853  Rleg_5633  two component transcriptional regulator, LuxR family  31.16 
 
 		 203 aa  75.1  0.0000000000009  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.603295  normal  1 
 
 
-
 
NC_010506  Swoo_2245  two component LuxR family transcriptional regulator  32.31 
 
 		 218 aa  75.1  0.0000000000009  Shewanella woodyi ATCC 51908  Bacteria  hitchhiker  0.00227369  normal  0.0543921 
 
 
-
 
NC_009783  VIBHAR_00157  transcriptional regulator LuxR  33.78 
 
 		 211 aa  74.3  0.000000000001  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009767  Rcas_1355  two component LuxR family transcriptional regulator  38.26 
 
 		 230 aa  74.3  0.000000000001  Roseiflexus castenholzii DSM 13941  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010625  Bphy_5778  cyclic nucleotide-binding protein  32.44 
 
 		 353 aa  74.3  0.000000000001  Burkholderia phymatum STM815  Bacteria  normal  1  normal  0.714206 
 
 
-
 
NC_011369  Rleg2_1389  two component transcriptional regulator, LuxR family  36.89 
 
 		 206 aa  74.3  0.000000000001  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.744509  normal  1 
 
 
-
 
NC_008254  Meso_0091  two component LuxR family transcriptional regulator  40.5 
 
 		 218 aa  74.7  0.000000000001  Chelativorans sp. BNC1  Bacteria  normal  1  n/a   
 
 
-
 
NC_009428  Rsph17025_1932  two component LuxR family transcriptional regulator  32.35 
 
 		 236 aa  74.7  0.000000000001  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009485  BBta_0852  two component LuxR family transcriptional regulator  34.27 
 
 		 224 aa  74.7  0.000000000001  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.852842  normal  0.596615 
 
 
-
 
NC_010725  Mpop_4737  two component transcriptional regulator, LuxR family  31.58 
 
 		 241 aa  74.3  0.000000000001  Methylobacterium populi BJ001  Bacteria  normal  1  normal  0.0133592 
 
 
-
 
NC_010511  M446_2941  two component LuxR family transcriptional regulator  35.37 
 
 		 251 aa  73.6  0.000000000002  Methylobacterium sp. 4-46  Bacteria  normal  0.80826  normal  0.0563961 
 
 
-
 
NC_010172  Mext_4345  regulatory protein LuxR  35.53 
 
 		 216 aa  73.9  0.000000000002  Methylobacterium extorquens PA1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008148  Rxyl_0094  two component LuxR family transcriptional regulator  32.86 
 
 		 222 aa  73.9  0.000000000002  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  1  n/a   
 
 
-
 
NC_008148  Rxyl_2613  two component LuxR family transcriptional regulator  31.86 
 
 		 207 aa  73.9  0.000000000002  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  1  n/a   
 
 
-
 
NC_009253  Dred_2108  two component LuxR family transcriptional regulator  34.55 
 
 		 218 aa  74.3  0.000000000002  Desulfotomaculum reducens MI-1  Bacteria  normal  1  n/a   
 
 
-
 
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