| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3140 |
|---|
| Symbol | |
|---|
| ID | 5611272 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 3792615 |
|---|
| End bp | 3793277 |
|---|
| Gene Length | 663 bp |
|---|
| Protein Length | 220 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640934078 |
|---|
| Product | two component LuxR family transcriptional regulator |
|---|
| Protein accession | YP_001474872 |
|---|
| Protein GI | 157376272 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.803361 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.270175 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTACAGC CACTTAAAAT AATAATAGCT GATGACCACC CACTGTTTCG CCAAGCCTTA
ATCAATATAT TAGCGCCTAA TTTCGATGAT GTGATCCTCT TTGAGGCTGA AACCATTGTG
GAGTTAGACA CGTTATTATC CGAGCATGAT GATGCGGATC TATTGTTACT CGATTTGAAT
ATTCCTAAAG CCCATGGATT TAATACCTTG ATCAGCATCC GAAACTGTTT TCCTCAGATG
GGGGTGATCG TGATCTCGGG TCAGGAAGAT AAAGTCACCG TGTCCAAGAG CATGTCTTTT
GGCGCCGCAG GATTCATTCC CAAGTCGACA ACGGCAGCGA TGATGTTAGA GGCGATACAG
AGCGTACTCG CCGGTAAGCA GTGGCTACCC GAAGGGTGCA GCAACTTCGA TGCGGTAGAA
GCCGATAGCA TGAGCAGTAA GATCATGAGC CTCTCACCGC GTCAACATCG AATTTTAATG
ATGTTTGCCG ATGGAATGTT AAATAAACAG ATTGCTTACG ATCTCGGGCT ATCGGAAGCC
ACTATCAAGG CTCACGCCAG CGCGATATTC TTAAAGTTAG GGGTTCACAC CCGTACTCAG
GCGGTGATAG CCATGAGTCA ACTTCAGCTG GATAAAGCCA CTTTCTCGCT CGAAGCACAG
TAG
|
|---|
| Protein sequence | MLQPLKIIIA DDHPLFRQAL INILAPNFDD VILFEAETIV ELDTLLSEHD DADLLLLDLN
IPKAHGFNTL ISIRNCFPQM GVIVISGQED KVTVSKSMSF GAAGFIPKST TAAMMLEAIQ
SVLAGKQWLP EGCSNFDAVE ADSMSSKIMS LSPRQHRILM MFADGMLNKQ IAYDLGLSEA
TIKAHASAIF LKLGVHTRTQ AVIAMSQLQL DKATFSLEAQ
|
|---|
| |