More than 300 homologs were found in PanDaTox collection
for query gene Pden_4339 on replicon NC_008687
Organism: Paracoccus denitrificans PD1222



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008687  Pden_4339  response regulator receiver protein  100 
 
 
233 aa  477  1e-134  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_009620  Smed_4816  response regulator receiver protein  43.09 
 
 
248 aa  88.2  1e-16  Sinorhizobium medicae WSM419  Bacteria  normal  0.890736  normal  0.794324 
 
 
-
 
NC_012669  Bcav_0236  two component transcriptional regulator, LuxR family  31.73 
 
 
224 aa  67  0.0000000002  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_009767  Rcas_3763  two component LuxR family transcriptional regulator  32.28 
 
 
221 aa  65.5  0.0000000007  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.0403461 
 
 
-
 
NC_009620  Smed_4344  two component LuxR family transcriptional regulator  44.68 
 
 
219 aa  64.3  0.000000001  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.218307 
 
 
-
 
NC_009972  Haur_4778  two component LuxR family transcriptional regulator  31.1 
 
 
208 aa  64.3  0.000000001  Herpetosiphon aurantiacus ATCC 23779  Bacteria  hitchhiker  0.00000269792  n/a   
 
 
-
 
NC_008254  Meso_0341  two component LuxR family transcriptional regulator  39.45 
 
 
216 aa  63.9  0.000000002  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_014165  Tbis_0228  LuxR family two component transcriptional regulator  32.05 
 
 
206 aa  63.9  0.000000002  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_009523  RoseRS_3278  two component LuxR family transcriptional regulator  33.15 
 
 
214 aa  63.5  0.000000002  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.749326 
 
 
-
 
NC_011831  Cagg_2569  transcriptional regulator, LuxR family  46.55 
 
 
508 aa  63.5  0.000000003  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_009636  Smed_2837  response regulator receiver protein  36.07 
 
 
262 aa  62.8  0.000000004  Sinorhizobium medicae WSM419  Bacteria  decreased coverage  0.00000311945  normal  0.812847 
 
 
-
 
NC_011369  Rleg2_1389  two component transcriptional regulator, LuxR family  42.7 
 
 
206 aa  62.4  0.000000006  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.744509  normal 
 
 
-
 
NC_012853  Rleg_5633  two component transcriptional regulator, LuxR family  43.82 
 
 
203 aa  62.4  0.000000006  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.603295  normal 
 
 
-
 
NC_010505  Mrad2831_4608  two component LuxR family transcriptional regulator  38.61 
 
 
275 aa  62  0.000000008  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.313635  normal 
 
 
-
 
NC_011369  Rleg2_3999  transcriptional regulator, LuxR family  33.33 
 
 
260 aa  61.2  0.00000001  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  decreased coverage  0.0000000117104  normal 
 
 
-
 
NC_013757  Gobs_4064  two component transcriptional regulator, LuxR family  34.09 
 
 
217 aa  61.6  0.00000001  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_012850  Rleg_1495  two component transcriptional regulator, LuxR family  41.3 
 
 
207 aa  60.8  0.00000002  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.194449  normal  0.395611 
 
 
-
 
NC_010511  M446_4981  two component LuxR family transcriptional regulator  37.61 
 
 
244 aa  60.8  0.00000002  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_010571  Oter_3231  two component LuxR family transcriptional regulator  34.45 
 
 
209 aa  60.8  0.00000002  Opitutus terrae PB90-1  Bacteria  normal  0.229823  normal  0.0283688 
 
 
-
 
NC_007954  Sden_3055  response regulator receiver  34.38 
 
 
219 aa  60.8  0.00000002  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_013235  Namu_3459  ATP-dependent transcriptional regulator, MalT- like, LuxR family  51.72 
 
 
901 aa  60.5  0.00000002  Nakamurella multipartita DSM 44233  Bacteria  decreased coverage  0.000984222  hitchhiker  0.00326143 
 
 
-
 
NC_012850  Rleg_4328  transcriptional regulator, LuxR family  31.97 
 
 
260 aa  60.1  0.00000003  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  decreased coverage  0.00000000127099  normal  0.0225245 
 
 
-
 
NC_007489  RSP_4133  two component LuxR family transcriptional regulator  35.64 
 
 
240 aa  60.1  0.00000003  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_014165  Tbis_0907  LuxR family two component transcriptional regulator  33.12 
 
 
197 aa  60.1  0.00000003  Thermobispora bispora DSM 43833  Bacteria  normal  0.365102  normal 
 
 
-
 
NC_013595  Sros_1680  response regulator receiver protein  32.39 
 
 
197 aa  60.1  0.00000003  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.516841 
 
 
-
 
NC_003296  RS03136  transcription regulator protein  47.37 
 
 
89 aa  59.7  0.00000004  Ralstonia solanacearum GMI1000  Bacteria  normal  0.625217  normal 
 
 
-
 
NC_014213  Mesil_3486  hypothetical protein  38.89 
 
 
206 aa  59.7  0.00000004  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_013526  Tter_2446  transcriptional regulator, LuxR family  34.65 
 
 
188 aa  59.7  0.00000004  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_0555  two component transcriptional regulator, LuxR family  33.57 
 
 
227 aa  59.3  0.00000004  Variovorax paradoxus S110  Bacteria  normal  0.401942  n/a   
 
 
-
 
NC_009050  Rsph17029_3701  two component LuxR family transcriptional regulator  34.72 
 
 
253 aa  59.7  0.00000004  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.567008  normal  0.770716 
 
 
-
 
NC_007760  Adeh_1997  two component LuxR family transcriptional regulator  37.61 
 
 
218 aa  59.3  0.00000005  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_014158  Tpau_2414  two component transcriptional regulator, LuxR family  33.16 
 
 
215 aa  59.3  0.00000005  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_013525  Tter_0300  two component transcriptional regulator, LuxR family  30.72 
 
 
224 aa  59.3  0.00000005  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_008010  Dgeo_2486  two component LuxR family transcriptional regulator  31.87 
 
 
208 aa  59.3  0.00000006  Deinococcus geothermalis DSM 11300  Bacteria  normal  n/a   
 
 
-
 
NC_011831  Cagg_2575  ATP-dependent transcriptional regulator, MalT-like, LuxR family  40.19 
 
 
917 aa  58.9  0.00000006  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_011365  Gdia_1908  two component transcriptional regulator, LuxR family  41.76 
 
 
201 aa  58.9  0.00000007  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  normal  0.264232 
 
 
-
 
NC_011891  A2cp1_1966  two component transcriptional regulator, LuxR family  36.75 
 
 
218 aa  58.9  0.00000007  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_2469  two component transcriptional regulator, LuxR family  27.94 
 
 
214 aa  58.9  0.00000007  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.126163  normal 
 
 
-
 
NC_011145  AnaeK_1881  two component transcriptional regulator, LuxR family  36.75 
 
 
218 aa  58.9  0.00000007  Anaeromyxobacter sp. K  Bacteria  normal  0.0160211  n/a   
 
 
-
 
NC_003296  RS05474  transcription regulator protein  46.75 
 
 
177 aa  58.5  0.00000008  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.303514 
 
 
-
 
NC_012669  Bcav_1588  two component transcriptional regulator, LuxR family  32.96 
 
 
201 aa  58.5  0.00000009  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.117504  normal 
 
 
-
 
NC_008782  Ajs_0555  two component LuxR family transcriptional regulator  35.09 
 
 
232 aa  58.5  0.00000009  Acidovorax sp. JS42  Bacteria  normal  0.173401  normal  0.808062 
 
 
-
 
NC_009921  Franean1_0528  two component LuxR family transcriptional regulator  27.94 
 
 
201 aa  58.2  0.0000001  Frankia sp. EAN1pec  Bacteria  normal  0.653057  normal 
 
 
-
 
NC_010524  Lcho_1299  two component LuxR family transcriptional regulator  46.51 
 
 
273 aa  57.8  0.0000001  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.0170327 
 
 
-
 
NC_009430  Rsph17025_4078  hypothetical protein  32.56 
 
 
243 aa  57.8  0.0000001  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.0439982  normal  0.0668702 
 
 
-
 
NC_008010  Dgeo_2846  two component LuxR family transcriptional regulator  53.33 
 
 
209 aa  58.2  0.0000001  Deinococcus geothermalis DSM 11300  Bacteria  normal  n/a   
 
 
-
 
NC_010571  Oter_3372  two component LuxR family transcriptional regulator  29.5 
 
 
212 aa  57.8  0.0000001  Opitutus terrae PB90-1  Bacteria  normal  normal  0.383896 
 
 
-
 
NC_008789  Hhal_1965  two component LuxR family transcriptional regulator  47.62 
 
 
217 aa  57.8  0.0000001  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_0474  response regulator receiver protein  49.06 
 
 
471 aa  57.8  0.0000002  Roseiflexus sp. RS-1  Bacteria  normal  0.40168  normal  0.0487434 
 
 
-
 
NC_013757  Gobs_4836  two component transcriptional regulator, LuxR family  37.21 
 
 
201 aa  57.4  0.0000002  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.16538  n/a   
 
 
-
 
NC_013235  Namu_2014  two component transcriptional regulator, LuxR family  37.76 
 
 
212 aa  57.4  0.0000002  Nakamurella multipartita DSM 44233  Bacteria  normal  0.172206  hitchhiker  0.00394331 
 
 
-
 
NC_008148  Rxyl_1953  two component LuxR family transcriptional regulator  54.69 
 
 
208 aa  57.4  0.0000002  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.160868  n/a   
 
 
-
 
NC_013093  Amir_1549  two component transcriptional regulator, LuxR family  39.58 
 
 
238 aa  57.4  0.0000002  Actinosynnema mirum DSM 43827  Bacteria  normal  0.196807  n/a   
 
 
-
 
NC_013946  Mrub_1264  two component LuxR family transcriptional regulator  31.25 
 
 
200 aa  57.4  0.0000002  Meiothermus ruber DSM 1279  Bacteria  normal  normal  0.86401 
 
 
-
 
NC_008576  Mmc1_3704  LuxR family transcriptional regulator  50.94 
 
 
220 aa  57.4  0.0000002  Magnetococcus sp. MC-1  Bacteria  normal  0.0339608  normal 
 
 
-
 
NC_009511  Swit_0926  regulatory protein, LuxR  50 
 
 
878 aa  57  0.0000002  Sphingomonas wittichii RW1  Bacteria  normal  0.289088  normal 
 
 
-
 
NC_009832  Spro_0132  two component LuxR family transcriptional regulator  33.64 
 
 
196 aa  57.8  0.0000002  Serratia proteamaculans 568  Bacteria  normal  0.401597  normal 
 
 
-
 
NC_009767  Rcas_0145  LuxR family transcriptional regulator  49.06 
 
 
454 aa  57.8  0.0000002  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_009523  RoseRS_0799  response regulator receiver protein  49.28 
 
 
204 aa  57  0.0000003  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.403434 
 
 
-
 
NC_011831  Cagg_1769  two component transcriptional regulator, LuxR family  35.35 
 
 
219 aa  56.6  0.0000003  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.221401  normal  0.0578747 
 
 
-
 
NC_009430  Rsph17025_4184  hypothetical protein  46.55 
 
 
207 aa  56.6  0.0000003  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.400045  normal  0.380291 
 
 
-
 
NC_008463  PA14_46360  putative two-component response regulator  44.59 
 
 
210 aa  57  0.0000003  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.016821 
 
 
-
 
NC_013161  Cyan8802_2417  two component transcriptional regulator, LuxR family  32.28 
 
 
226 aa  56.6  0.0000003  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_008578  Acel_1390  two component LuxR family transcriptional regulator  41.67 
 
 
225 aa  56.6  0.0000003  Acidothermus cellulolyticus 11B  Bacteria  normal  normal 
 
 
-
 
NC_011726  PCC8801_2367  two component transcriptional regulator, LuxR family  32.28 
 
 
226 aa  56.6  0.0000003  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_011729  PCC7424_0164  two component transcriptional regulator, LuxR family  33.06 
 
 
234 aa  56.2  0.0000004  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.0441129 
 
 
-
 
NC_009997  Sbal195_1319  two component LuxR family transcriptional regulator  31.67 
 
 
216 aa  56.2  0.0000004  Shewanella baltica OS195  Bacteria  normal  0.0542522  decreased coverage  0.000972679 
 
 
-
 
NC_007493  RSP_0316  LuxR family transcriptional regulator  35.51 
 
 
213 aa  56.2  0.0000004  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.155222  n/a   
 
 
-
 
NC_007643  Rru_A2232  two component LuxR family transcriptional regulator  35.24 
 
 
212 aa  56.6  0.0000004  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_1810  two component LuxR family transcriptional regulator  40.45 
 
 
218 aa  56.6  0.0000004  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_4360  transcriptional regulator, LuxR family  47.76 
 
 
381 aa  56.2  0.0000004  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_009972  Haur_1309  two component LuxR family transcriptional regulator  39.33 
 
 
206 aa  56.6  0.0000004  Herpetosiphon aurantiacus ATCC 23779  Bacteria  hitchhiker  0.000148999  n/a   
 
 
-
 
NC_009049  Rsph17029_1961  response regulator receiver protein  35.51 
 
 
247 aa  56.2  0.0000004  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_8454  two component transcriptional regulator, LuxR family  30.93 
 
 
248 aa  55.8  0.0000005  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.0223663  hitchhiker  0.00000372445 
 
 
-
 
NC_007912  Sde_0994  response regulator receiver domain-containing protein  40.54 
 
 
221 aa  55.8  0.0000005  Saccharophagus degradans 2-40  Bacteria  normal  0.16925  normal 
 
 
-
 
NC_013441  Gbro_1936  regulatory protein LuxR  54.9 
 
 
218 aa  55.8  0.0000005  Gordonia bronchialis DSM 43247  Bacteria  normal  0.548655  n/a   
 
 
-
 
NC_009052  Sbal_1241  two component LuxR family transcriptional regulator  32.23 
 
 
216 aa  55.8  0.0000005  Shewanella baltica OS155  Bacteria  decreased coverage  0.0000399601  n/a   
 
 
-
 
NC_013947  Snas_3726  transcriptional regulator, LuxR family  50 
 
 
826 aa  55.8  0.0000006  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.473578  normal  0.0380673 
 
 
-
 
NC_013235  Namu_5018  two component transcriptional regulator, LuxR family  39.77 
 
 
209 aa  55.8  0.0000006  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_009665  Shew185_1285  two component LuxR family transcriptional regulator  32.23 
 
 
216 aa  55.8  0.0000006  Shewanella baltica OS185  Bacteria  decreased coverage  0.000337392  n/a   
 
 
-
 
NC_008340  Mlg_1006  two component LuxR family transcriptional regulator  42.53 
 
 
219 aa  55.5  0.0000006  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal 
 
 
-
 
NC_007951  Bxe_A3176  two component LuxR family transcriptional regulator  29.35 
 
 
292 aa  55.5  0.0000007  Burkholderia xenovorans LB400  Bacteria  normal  0.0570221  normal  0.472976 
 
 
-
 
NC_013521  Sked_03860  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  34.75 
 
 
204 aa  55.5  0.0000008  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.0649288  normal  0.281143 
 
 
-
 
NC_009664  Krad_2599  two component transcriptional regulator, LuxR family  32.2 
 
 
211 aa  55.1  0.0000008  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_009667  Oant_0267  two component LuxR family transcriptional regulator  35.85 
 
 
241 aa  55.5  0.0000008  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_010320  Teth514_2042  two component LuxR family transcriptional regulator  35.87 
 
 
208 aa  55.1  0.0000008  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_0262  two component transcriptional regulator, LuxR family  27.78 
 
 
225 aa  55.1  0.0000009  Conexibacter woesei DSM 14684  Bacteria  normal  0.0721339  normal  0.623073 
 
 
-
 
NC_009719  Plav_1690  two component LuxR family transcriptional regulator  38.83 
 
 
215 aa  55.1  0.0000009  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal  0.104312 
 
 
-
 
NC_008044  TM1040_0960  two component LuxR family transcriptional regulator  29.88 
 
 
214 aa  55.1  0.0000009  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_008752  Aave_2497  two component LuxR family transcriptional regulator  49.23 
 
 
229 aa  55.1  0.0000009  Acidovorax citrulli AAC00-1  Bacteria  hitchhiker  0.000315398  normal  0.0281112 
 
 
-
 
NC_009675  Anae109_0915  two component LuxR family transcriptional regulator  49.09 
 
 
202 aa  54.3  0.000001  Anaeromyxobacter sp. Fw109-5  Bacteria  hitchhiker  0.000299753  normal 
 
 
-
 
NC_013441  Gbro_0184  regulatory protein LuxR  46.88 
 
 
489 aa  54.7  0.000001  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_4194  LuxR family GAF modulated transcriptional regulator  45.21 
 
 
285 aa  54.3  0.000001  Frankia sp. EAN1pec  Bacteria  normal  0.0104113  normal 
 
 
-
 
NC_014248  Aazo_0236  LuxR family two component transcriptional regulator  37.63 
 
 
218 aa  54.7  0.000001  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_010571  Oter_1682  two component LuxR family transcriptional regulator  33.64 
 
 
220 aa  54.7  0.000001  Opitutus terrae PB90-1  Bacteria  normal  normal  0.800734 
 
 
-
 
NC_007643  Rru_A3229  two component LuxR family transcriptional regulator  31.9 
 
 
224 aa  54.7  0.000001  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_008009  Acid345_1691  two component LuxR family transcriptional regulator  35.29 
 
 
208 aa  54.7  0.000001  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal  0.0637899 
 
 
-
 
NC_012850  Rleg_0280  two component transcriptional regulator, LuxR family  32.82 
 
 
245 aa  54.7  0.000001  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.417338  normal 
 
 
-
 
NC_011901  Tgr7_2171  two component transcriptional regulator, LuxR family  52.83 
 
 
227 aa  54.7  0.000001  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_009075  BURPS668_A1652  ATP-dependent transcription regulator LuxR  42.19 
 
 
234 aa  55.1  0.000001  Burkholderia pseudomallei 668  Bacteria  normal  0.643432  n/a   
 
 
-
 
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