More than 300 homologs were found in PanDaTox collection
for query gene Rxyl_1953 on replicon NC_008148
Organism: Rubrobacter xylanophilus DSM 9941



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008148  Rxyl_1953  two component LuxR family transcriptional regulator  100 
 
 
208 aa  419  1e-116  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.160868  n/a   
 
 
-
 
NC_008740  Maqu_3089  two component LuxR family transcriptional regulator  33.83 
 
 
219 aa  92.8  3e-18  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_3331  response regulator receiver protein  34.52 
 
 
227 aa  90.1  2e-17  Streptosporangium roseum DSM 43021  Bacteria  normal  0.832029  normal  0.250763 
 
 
-
 
NC_011898  Ccel_1863  two component transcriptional regulator, LuxR family  29.23 
 
 
216 aa  84.7  8e-16  Clostridium cellulolyticum H10  Bacteria  hitchhiker  0.00000548978  n/a   
 
 
-
 
NC_013757  Gobs_2145  two component transcriptional regulator, LuxR family  40.91 
 
 
220 aa  84  0.000000000000001  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.0196231  n/a   
 
 
-
 
NC_013385  Adeg_1034  two component transcriptional regulator, LuxR family  32.46 
 
 
213 aa  82.8  0.000000000000003  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_011899  Hore_21820  two component transcriptional regulator, LuxR family  29.61 
 
 
211 aa  82.4  0.000000000000004  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_1684  response regulator receiver protein  34.87 
 
 
207 aa  82.8  0.000000000000004  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.966789 
 
 
-
 
NC_009832  Spro_2900  transcriptional regulator NarL  31.66 
 
 
216 aa  82  0.000000000000006  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_011149  SeAg_B3813  putative transcriptional regulator  32.72 
 
 
200 aa  82  0.000000000000006  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_011083  SeHA_C3921  putative transcriptional regulator  32.72 
 
 
200 aa  82  0.000000000000006  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal 
 
 
-
 
NC_011094  SeSA_A3800  putative transcriptional regulator  32.72 
 
 
200 aa  82  0.000000000000006  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal 
 
 
-
 
NC_013172  Bfae_00310  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  32.06 
 
 
213 aa  81.6  0.000000000000007  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_011080  SNSL254_A3878  putative transcriptional regulator  32.72 
 
 
200 aa  81.6  0.000000000000008  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
NC_009620  Smed_4344  two component LuxR family transcriptional regulator  33.93 
 
 
219 aa  81.3  0.000000000000009  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.218307 
 
 
-
 
NC_010320  Teth514_2042  two component LuxR family transcriptional regulator  26.2 
 
 
208 aa  81.3  0.00000000000001  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_013235  Namu_1210  two component transcriptional regulator, LuxR family  37.09 
 
 
198 aa  80.1  0.00000000000002  Nakamurella multipartita DSM 44233  Bacteria  normal  0.292938  normal 
 
 
-
 
NC_012880  Dd703_1766  transcriptional regulator NarL  32.16 
 
 
216 aa  80.5  0.00000000000002  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_014210  Ndas_4080  two component transcriptional regulator, LuxR family  30.85 
 
 
241 aa  80.5  0.00000000000002  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.858367 
 
 
-
 
NC_011205  SeD_A3981  putative transcriptional regulator  32.72 
 
 
200 aa  80.5  0.00000000000002  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal  0.347336 
 
 
-
 
NC_012912  Dd1591_1848  transcriptional regulator NarL  35.25 
 
 
215 aa  79.7  0.00000000000003  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_007951  Bxe_A1815  two component LuxR family transcriptional regulator  30.81 
 
 
213 aa  79.7  0.00000000000003  Burkholderia xenovorans LB400  Bacteria  normal  0.922696  normal  0.34679 
 
 
-
 
NC_014151  Cfla_2842  two component transcriptional regulator, LuxR family  35.11 
 
 
226 aa  79.7  0.00000000000003  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.622781  decreased coverage  0.00305681 
 
 
-
 
NC_009012  Cthe_1267  two component LuxR family transcriptional regulator  28.21 
 
 
216 aa  79.7  0.00000000000003  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_011886  Achl_3912  two component transcriptional regulator, LuxR family  33.17 
 
 
230 aa  79.3  0.00000000000004  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_013093  Amir_7009  two component transcriptional regulator, LuxR family  33.71 
 
 
218 aa  79.3  0.00000000000004  Actinosynnema mirum DSM 43827  Bacteria  normal  0.0896567  n/a   
 
 
-
 
NC_013441  Gbro_1936  regulatory protein LuxR  31.03 
 
 
218 aa  78.6  0.00000000000007  Gordonia bronchialis DSM 43247  Bacteria  normal  0.548655  n/a   
 
 
-
 
NC_008148  Rxyl_2613  two component LuxR family transcriptional regulator  38.32 
 
 
207 aa  78.2  0.00000000000008  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_2469  two component transcriptional regulator, LuxR family  33.33 
 
 
214 aa  78.2  0.00000000000009  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.126163  normal 
 
 
-
 
NC_013235  Namu_5018  two component transcriptional regulator, LuxR family  30.15 
 
 
209 aa  77.8  0.0000000000001  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_0928  response regulator receiver protein  32.18 
 
 
207 aa  77.8  0.0000000000001  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0707495  normal 
 
 
-
 
NC_011658  BCAH187_A5591  DNA-binding response regulator  29.21 
 
 
215 aa  77.4  0.0000000000001  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_5540  DNA-binding response regulator  29.21 
 
 
215 aa  77  0.0000000000002  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_3745  two component transcriptional regulator, LuxR family  29.41 
 
 
235 aa  76.6  0.0000000000002  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.627677  normal  0.255424 
 
 
-
 
NC_011772  BCG9842_B5417  DNA-binding response regulator  31.45 
 
 
215 aa  77  0.0000000000002  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_2010  two component transcriptional regulator, LuxR family  37.13 
 
 
214 aa  76.6  0.0000000000002  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_3240  two component transcriptional regulator, LuxR family  31.33 
 
 
224 aa  76.6  0.0000000000002  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_008463  PA14_13730  transcriptional regulator NarL  29.9 
 
 
219 aa  77  0.0000000000002  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.817999 
 
 
-
 
NC_014210  Ndas_0346  two component transcriptional regulator, LuxR family  34.17 
 
 
210 aa  76.6  0.0000000000002  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.0205277  normal  0.823307 
 
 
-
 
NC_009656  PSPA7_1229  transcriptional regulator NarL  29.9 
 
 
219 aa  77  0.0000000000002  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_011312  VSAL_I2370  nitrate/nitrite response regulator protein NarP  29.47 
 
 
203 aa  77  0.0000000000002  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_002976  SERP1384  LuxR family DNA-binding response regulator  30.77 
 
 
207 aa  76.3  0.0000000000003  Staphylococcus epidermidis RP62A  Bacteria  hitchhiker  0.000639089  n/a   
 
 
-
 
NC_005945  BAS5263  DNA-binding response regulator  29.21 
 
 
215 aa  76.6  0.0000000000003  Bacillus anthracis str. Sterne  Bacteria  normal  0.24037  n/a   
 
 
-
 
NC_005957  BT9727_5091  response regulator  29.21 
 
 
215 aa  76.6  0.0000000000003  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK5108  response regulator  29.21 
 
 
215 aa  76.6  0.0000000000003  Bacillus cereus E33L  Bacteria  decreased coverage  0.00235048  n/a   
 
 
-
 
NC_011149  SeAg_B1373  transcriptional regulator NarL  37.41 
 
 
216 aa  76.3  0.0000000000003  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.276843  n/a   
 
 
-
 
NC_007404  Tbd_1399  transcriptional regulator NarL  27.64 
 
 
219 aa  76.3  0.0000000000003  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.0261138  normal 
 
 
-
 
NC_011080  SNSL254_A1898  transcriptional regulator NarL  37.41 
 
 
216 aa  76.3  0.0000000000003  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal  0.335981 
 
 
-
 
NC_011773  BCAH820_5506  DNA-binding response regulator  29.21 
 
 
215 aa  76.6  0.0000000000003  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_007530  GBAA_5661  DNA-binding response regulator  29.21 
 
 
215 aa  76.6  0.0000000000003  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_011083  SeHA_C1962  transcriptional regulator NarL  37.41 
 
 
216 aa  76.3  0.0000000000003  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal  0.356331 
 
 
-
 
NC_009952  Dshi_0465  two component transcriptional regulator  32.54 
 
 
239 aa  76.3  0.0000000000003  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_008044  TM1040_0828  two component LuxR family transcriptional regulator  36.57 
 
 
204 aa  76.3  0.0000000000003  Ruegeria sp. TM1040  Bacteria  hitchhiker  0.00513824  normal  0.360671 
 
 
-
 
NC_011094  SeSA_A1904  transcriptional regulator NarL  37.41 
 
 
216 aa  76.3  0.0000000000003  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal 
 
 
-
 
NC_008148  Rxyl_2809  two component LuxR family transcriptional regulator  35.58 
 
 
219 aa  76.3  0.0000000000003  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_014151  Cfla_2683  two component transcriptional regulator, LuxR family  33.16 
 
 
209 aa  76.3  0.0000000000003  Cellulomonas flavigena DSM 20109  Bacteria  normal  normal 
 
 
-
 
NC_011725  BCB4264_A5535  DNA-binding response regulator  30.82 
 
 
215 aa  76.6  0.0000000000003  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_011205  SeD_A1556  transcriptional regulator NarL  37.41 
 
 
216 aa  76.3  0.0000000000003  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal  0.109518 
 
 
-
 
NC_010184  BcerKBAB4_5205  two component LuxR family transcriptional regulator  31.65 
 
 
215 aa  76.3  0.0000000000004  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_010465  YPK_1384  two component LuxR family transcriptional regulator  26.11 
 
 
209 aa  75.9  0.0000000000004  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_010159  YpAngola_A2794  nitrate/nitrite response regulator protein NarP  26.11 
 
 
209 aa  75.9  0.0000000000004  Yersinia pestis Angola  Bacteria  normal  normal  0.0858473 
 
 
-
 
NC_009708  YpsIP31758_1270  nitrate/nitrite response regulator protein NarP  26.11 
 
 
209 aa  75.9  0.0000000000004  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  0.214676  n/a   
 
 
-
 
NC_007509  Bcep18194_C7667  two component LuxR family transcriptional regulator  38.58 
 
 
209 aa  75.5  0.0000000000005  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_1558  response regulator receiver  29.87 
 
 
221 aa  75.5  0.0000000000005  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_012793  GWCH70_3043  two component transcriptional regulator, LuxR family  31.14 
 
 
225 aa  75.5  0.0000000000005  Geobacillus sp. WCH70  Bacteria  decreased coverage  0.0000000652561  n/a   
 
 
-
 
NC_013131  Caci_7843  two component transcriptional regulator, LuxR family  34.07 
 
 
231 aa  75.5  0.0000000000005  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.176081 
 
 
-
 
NC_013235  Namu_4606  two component transcriptional regulator, LuxR family  33.75 
 
 
207 aa  75.5  0.0000000000006  Nakamurella multipartita DSM 44233  Bacteria  normal  normal  0.296562 
 
 
-
 
NC_009436  Ent638_2318  transcriptional regulator NarL  35.97 
 
 
216 aa  75.1  0.0000000000006  Enterobacter sp. 638  Bacteria  normal  normal 
 
 
-
 
NC_013530  Xcel_3326  two component transcriptional regulator, LuxR family  34.15 
 
 
223 aa  75.1  0.0000000000007  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_5304  response regulator receiver protein  34.78 
 
 
220 aa  75.1  0.0000000000007  Streptosporangium roseum DSM 43021  Bacteria  normal  0.128918  normal 
 
 
-
 
NC_010658  SbBS512_E1388  transcriptional regulator NarL  36.69 
 
 
216 aa  74.7  0.0000000000008  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_2262  transcriptional regulator NarL  37.41 
 
 
216 aa  75.1  0.0000000000008  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.0331529  n/a   
 
 
-
 
NC_007643  Rru_A3229  two component LuxR family transcriptional regulator  37.41 
 
 
224 aa  74.7  0.0000000000009  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_0356  two component transcriptional regulator, LuxR family  34.57 
 
 
220 aa  74.7  0.0000000000009  Conexibacter woesei DSM 14684  Bacteria  normal  0.165726  normal  0.0985551 
 
 
-
 
NC_012669  Bcav_0102  two component transcriptional regulator, LuxR family  36.71 
 
 
221 aa  74.7  0.0000000000009  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.0637251  normal 
 
 
-
 
CP001509  ECD_01199  DNA-binding response regulator in two-component regulatory system with NarX (or NarQ)  35.97 
 
 
216 aa  74.3  0.000000000001  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_2425  two component transcriptional regulator, LuxR family  35.97 
 
 
216 aa  74.3  0.000000000001  Escherichia coli DH1  Bacteria  hitchhiker  0.00984481  n/a   
 
 
-
 
NC_012791  Vapar_0555  two component transcriptional regulator, LuxR family  34.13 
 
 
227 aa  74.3  0.000000000001  Variovorax paradoxus S110  Bacteria  normal  0.401942  n/a   
 
 
-
 
NC_013757  Gobs_4001  two component transcriptional regulator, LuxR family  28.29 
 
 
236 aa  74.3  0.000000000001  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_4012  transcriptional regulator NarL  31.16 
 
 
214 aa  74.3  0.000000000001  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_011138  MADE_03853  transcriptional regulator NarL  28.64 
 
 
217 aa  73.9  0.000000000001  Alteromonas macleodii 'Deep ecotype'  Bacteria  unclonable  0.0000020037  n/a   
 
 
-
 
NC_010468  EcolC_2402  transcriptional regulator NarL  35.97 
 
 
216 aa  74.3  0.000000000001  Escherichia coli ATCC 8739  Bacteria  normal  hitchhiker  0.0000198441 
 
 
-
 
NC_013947  Snas_5788  two component transcriptional regulator, LuxR family  34.53 
 
 
214 aa  74.3  0.000000000001  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.785726 
 
 
-
 
NC_013947  Snas_3811  two component transcriptional regulator, LuxR family  36.47 
 
 
206 aa  73.9  0.000000000001  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  hitchhiker  0.00252848 
 
 
-
 
NC_007498  Pcar_0978  two component signal transduction response regulator  29.72 
 
 
223 aa  74.7  0.000000000001  Pelobacter carbinolicus DSM 2380  Bacteria  normal  0.0402933  n/a   
 
 
-
 
NC_012892  B21_01209  hypothetical protein  35.97 
 
 
216 aa  74.3  0.000000000001  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_013501  Rmar_1005  two component transcriptional regulator, LuxR family  33.99 
 
 
211 aa  74.3  0.000000000001  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_011353  ECH74115_1704  transcriptional regulator NarL  35.97 
 
 
216 aa  74.3  0.000000000001  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  0.276657  normal 
 
 
-
 
NC_009767  Rcas_3763  two component LuxR family transcriptional regulator  32.26 
 
 
221 aa  74.3  0.000000000001  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.0403461 
 
 
-
 
NC_011901  Tgr7_2171  two component transcriptional regulator, LuxR family  35.22 
 
 
227 aa  74.7  0.000000000001  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_008699  Noca_1020  response regulator receiver  32.91 
 
 
218 aa  74.3  0.000000000001  Nocardioides sp. JS614  Bacteria  normal  0.648692  n/a   
 
 
-
 
NC_009801  EcE24377A_1371  transcriptional regulator NarL  35.97 
 
 
216 aa  74.3  0.000000000001  Escherichia coli E24377A  Bacteria  normal  0.213666  n/a   
 
 
-
 
NC_013421  Pecwa_2568  transcriptional regulator NarL  37.41 
 
 
216 aa  74.3  0.000000000001  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_013205  Aaci_0516  two component transcriptional regulator, LuxR family  25.37 
 
 
231 aa  74.3  0.000000000001  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_009800  EcHS_A1330  transcriptional regulator NarL  35.97 
 
 
216 aa  74.3  0.000000000001  Escherichia coli HS  Bacteria  normal  0.724195  n/a   
 
 
-
 
NC_010498  EcSMS35_1919  transcriptional regulator NarL  35.97 
 
 
216 aa  74.3  0.000000000001  Escherichia coli SMS-3-5  Bacteria  normal  0.397816  normal  0.11445 
 
 
-
 
NC_007333  Tfu_1403  LuxR response regulator receiver  31.84 
 
 
214 aa  73.2  0.000000000002  Thermobifida fusca YX  Bacteria  normal  0.676683  n/a   
 
 
-
 
NC_008463  PA14_46360  putative two-component response regulator  31.41 
 
 
210 aa  73.6  0.000000000002  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.016821 
 
 
-
 
NC_009456  VC0395_0613  nitrate/nitrite response regulator NarP  31.84 
 
 
208 aa  73.9  0.000000000002  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_3278  two component LuxR family transcriptional regulator  31.21 
 
 
214 aa  73.9  0.000000000002  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.749326 
 
 
-
 
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