| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rxyl_1953 |
|---|
| Symbol | |
|---|
| ID | 4115745 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rubrobacter xylanophilus DSM 9941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008148 |
|---|
| Strand | - |
|---|
| Start bp | 1975641 |
|---|
| End bp | 1976267 |
|---|
| Gene Length | 627 bp |
|---|
| Protein Length | 208 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 638036739 |
|---|
| Product | two component LuxR family transcriptional regulator |
|---|
| Protein accession | YP_644712 |
|---|
| Protein GI | 108804775 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.160868 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGTCGGAC AGGTCGCTCA CATCAAGCCC AAGCGGCTGG GGCTGGTATG GCTCTACTGC
CCCTACCCCG TGCTGGCCAG GGGGCTCATA GACATACTGG ATCCCGACGC GAGGATCCAC
TACGCGGAGA GCGCGCCCTC CGGCGACCGG CCGGACATCG TCCTGTTCTG CGCCGGCGGC
GCCGAGGACG TGGGGGAGGC GGTGCGCAGG CTGCAGGAGC AGGCCCCGGG GGCCTCGGTG
GTGGTCTTCG GCCTGAGCAG CGACCTCAAC CTCGCCCGCG CCGGGCTGCA GGCCGGCGCC
AAGGGGTTCG TGCACGCGGG GATGGAGCCC TCTCAGGTGG TGCGCGCCCT CACGGTGGCC
GCCTCCGGGG AGGTGGCGGT GCCGCGGGAT CTCTTGAAGG ACCTCGTGGC CGGGAGGGAG
CCGGTGGACC TCAGCGGCCT GACCCACCGC CAGCAGGAGA TCCTGAAGCT CGTCGCCGAG
GGCCAGACCA ACGCCCAGAT AGGGCGGCGC CTCTTCCTCT CGGAGTCCAC CGTCAAGCAG
CACCTGCGGG CGGCCTACAA GGTGCTCAAG GTGCGCAACC GCACCGAGGC GGCGAAGCTC
ATCCGCGAGC GGGCGAACTG GGACTAG
|
|---|
| Protein sequence | MVGQVAHIKP KRLGLVWLYC PYPVLARGLI DILDPDARIH YAESAPSGDR PDIVLFCAGG
AEDVGEAVRR LQEQAPGASV VVFGLSSDLN LARAGLQAGA KGFVHAGMEP SQVVRALTVA
ASGEVAVPRD LLKDLVAGRE PVDLSGLTHR QQEILKLVAE GQTNAQIGRR LFLSESTVKQ
HLRAAYKVLK VRNRTEAAKL IRERANWD
|
|---|
| |