More than 300 homologs were found in PanDaTox collection
for query gene Caci_2115 on replicon NC_013131
Organism: Catenulispora acidiphila DSM 44928



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013131  Caci_2115  transcriptional regulator, LuxR family  100 
 
 
267 aa  527  1e-149  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_5616  LuxR family transcriptional regulator  35.96 
 
 
347 aa  89.4  6e-17  Frankia sp. EAN1pec  Bacteria  normal  0.0605675  normal  0.548217 
 
 
-
 
NC_007777  Francci3_0925  LuxR family transcriptional regulator  34.73 
 
 
297 aa  87.4  2e-16  Frankia sp. CcI3  Bacteria  normal  0.177236  normal 
 
 
-
 
NC_007777  Francci3_4027  LuxR family transcriptional regulator  29.92 
 
 
275 aa  74.3  0.000000000002  Frankia sp. CcI3  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_1067  transcriptional regulator, LuxR family  41.59 
 
 
205 aa  74.7  0.000000000002  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.506731 
 
 
-
 
NC_009012  Cthe_1267  two component LuxR family transcriptional regulator  44.44 
 
 
216 aa  65.1  0.000000001  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_013757  Gobs_0707  two component transcriptional regulator, LuxR family  42.71 
 
 
270 aa  62.4  0.000000007  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_2042  ATP-dependent transcriptional regulator, MalT- like, LuxR family  47.3 
 
 
947 aa  62.4  0.000000008  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_1495  two component transcriptional regulator, LuxR family  37.93 
 
 
207 aa  61.6  0.00000001  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.194449  normal  0.395611 
 
 
-
 
NC_013204  Elen_2193  transcriptional regulator, LuxR family  24.71 
 
 
258 aa  60.8  0.00000002  Eggerthella lenta DSM 2243  Bacteria  normal  normal 
 
 
-
 
NC_013385  Adeg_1034  two component transcriptional regulator, LuxR family  39.36 
 
 
213 aa  59.7  0.00000004  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_008009  Acid345_3502  two component LuxR family transcriptional regulator  41.67 
 
 
228 aa  60.1  0.00000004  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_4937  two component transcriptional regulator, LuxR family  51.85 
 
 
224 aa  60.1  0.00000004  Conexibacter woesei DSM 14684  Bacteria  normal  0.570807  normal  0.210467 
 
 
-
 
NC_009565  TBFG_10909  LuxR family transcriptional regulator  42.68 
 
 
882 aa  60.1  0.00000004  Mycobacterium tuberculosis F11  Bacteria  normal  normal 
 
 
-
 
NC_011899  Hore_21820  two component transcriptional regulator, LuxR family  38.96 
 
 
211 aa  59.7  0.00000005  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_011369  Rleg2_1389  two component transcriptional regulator, LuxR family  37.18 
 
 
206 aa  58.9  0.00000007  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.744509  normal 
 
 
-
 
NC_012034  Athe_2627  two component transcriptional regulator, LuxR family  30.48 
 
 
211 aa  58.2  0.0000001  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_008146  Mmcs_1370  LuxR family transcriptional regulator  50.85 
 
 
881 aa  58.5  0.0000001  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_013235  Namu_0324  transcriptional regulator, LuxR family  51.39 
 
 
938 aa  58.2  0.0000001  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_008705  Mkms_1388  LuxR family transcriptional regulator  50.85 
 
 
881 aa  58.5  0.0000001  Mycobacterium sp. KMS  Bacteria  normal  0.0315811  normal 
 
 
-
 
NC_009077  Mjls_1404  LuxR family transcriptional regulator  50.85 
 
 
876 aa  58.5  0.0000001  Mycobacterium sp. JLS  Bacteria  normal  normal 
 
 
-
 
NC_013159  Svir_19250  transcriptional regulator, LuxR family  44.62 
 
 
894 aa  58.2  0.0000001  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.368916  normal  0.454776 
 
 
-
 
NC_008740  Maqu_3089  two component LuxR family transcriptional regulator  40.24 
 
 
219 aa  57.8  0.0000002  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_013757  Gobs_0156  two component transcriptional regulator, LuxR family  41.67 
 
 
230 aa  57.4  0.0000002  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.379873  n/a   
 
 
-
 
NC_012793  GWCH70_0367  transcriptional regulator, LuxR family  48.15 
 
 
556 aa  57.4  0.0000002  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_0637  two component transcriptional regulator, LuxR family  46.67 
 
 
229 aa  57.8  0.0000002  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.565019 
 
 
-
 
NC_014210  Ndas_2024  two component transcriptional regulator, LuxR family  43.9 
 
 
220 aa  57.4  0.0000003  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.876474  normal 
 
 
-
 
NC_014158  Tpau_3507  two component transcriptional regulator, LuxR family  50.88 
 
 
213 aa  57  0.0000003  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.892641  n/a   
 
 
-
 
NC_008726  Mvan_5928  regulatory protein, LuxR  44.44 
 
 
1085 aa  57.4  0.0000003  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.9439  normal 
 
 
-
 
NC_013530  Xcel_0190  two component transcriptional regulator, LuxR family  40.66 
 
 
219 aa  56.6  0.0000004  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.146862  n/a   
 
 
-
 
NC_008148  Rxyl_0094  two component LuxR family transcriptional regulator  40.23 
 
 
222 aa  56.6  0.0000004  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_009338  Mflv_1351  response regulator receiver protein  45.45 
 
 
189 aa  56.6  0.0000004  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.631825  normal  0.574707 
 
 
-
 
NC_013457  VEA_000650  transcriptional regulator LuxR family  22.79 
 
 
292 aa  56.6  0.0000004  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_1243  transcriptional regulator, LuxR family  47.27 
 
 
550 aa  56.2  0.0000005  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_013172  Bfae_02400  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  50.94 
 
 
255 aa  56.2  0.0000005  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_5788  two component transcriptional regulator, LuxR family  45.45 
 
 
214 aa  56.2  0.0000005  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.785726 
 
 
-
 
NC_013530  Xcel_0759  two component transcriptional regulator, LuxR family  48.33 
 
 
221 aa  55.8  0.0000006  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.174089  n/a   
 
 
-
 
NC_008699  Noca_3643  two component LuxR family transcriptional regulator  44.16 
 
 
215 aa  56.2  0.0000006  Nocardioides sp. JS614  Bacteria  normal  0.516516  n/a   
 
 
-
 
NC_014213  Mesil_3486  hypothetical protein  44.62 
 
 
206 aa  56.2  0.0000006  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_013161  Cyan8802_1838  two component transcriptional regulator, LuxR family  48.08 
 
 
231 aa  55.8  0.0000007  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_007005  Psyr_4376  LuxR response regulator receiver  51.79 
 
 
265 aa  55.8  0.0000007  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.945677 
 
 
-
 
NC_011729  PCC7424_2955  two component transcriptional regulator, LuxR family  50 
 
 
231 aa  55.8  0.0000007  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.800941 
 
 
-
 
NC_011726  PCC8801_1812  two component transcriptional regulator, LuxR family  48.08 
 
 
231 aa  55.8  0.0000007  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_009380  Strop_2458  response regulator receiver  44.44 
 
 
220 aa  55.8  0.0000007  Salinispora tropica CNB-440  Bacteria  normal  0.0554598  normal 
 
 
-
 
NC_013947  Snas_2469  two component transcriptional regulator, LuxR family  41.86 
 
 
214 aa  55.5  0.0000008  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.126163  normal 
 
 
-
 
NC_009972  Haur_0983  two component LuxR family transcriptional regulator  48.33 
 
 
213 aa  55.5  0.0000008  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_013441  Gbro_4161  regulatory protein LuxR  50 
 
 
893 aa  55.8  0.0000008  Gordonia bronchialis DSM 43247  Bacteria  normal  0.339617  n/a   
 
 
-
 
NC_013521  Sked_11330  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  52.83 
 
 
224 aa  54.7  0.000001  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.0103975 
 
 
-
 
NC_011884  Cyan7425_4627  two component transcriptional regulator, LuxR family  37.18 
 
 
226 aa  55.5  0.000001  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_014151  Cfla_0822  two component transcriptional regulator, LuxR family  43.84 
 
 
229 aa  55.5  0.000001  Cellulomonas flavigena DSM 20109  Bacteria  normal  normal 
 
 
-
 
NC_013441  Gbro_2140  response regulator receiver  42.11 
 
 
218 aa  54.3  0.000002  Gordonia bronchialis DSM 43247  Bacteria  normal  0.95288  n/a   
 
 
-
 
NC_013131  Caci_3625  transcriptional regulator, LuxR family  52.73 
 
 
925 aa  53.9  0.000002  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_1706  transcriptional regulator, LuxR family  43.33 
 
 
913 aa  54.3  0.000002  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.08592 
 
 
-
 
NC_007413  Ava_0301  two component LuxR family transcriptional regulator  48.08 
 
 
231 aa  53.9  0.000002  Anabaena variabilis ATCC 29413  Bacteria  normal  0.54347  normal 
 
 
-
 
NC_013159  Svir_38420  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  41.98 
 
 
226 aa  54.7  0.000002  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_011988  Avi_5287  two component response regulator  31.82 
 
 
896 aa  54.7  0.000002  Agrobacterium vitis S4  Bacteria  normal  0.318061  n/a   
 
 
-
 
NC_013441  Gbro_4528  response regulator receiver  49.02 
 
 
213 aa  54.3  0.000002  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_010322  PputGB1_0619  two component LuxR family transcriptional regulator  45.9 
 
 
258 aa  54.3  0.000002  Pseudomonas putida GB-1  Bacteria  normal  normal  0.0738447 
 
 
-
 
NC_013757  Gobs_2953  transcriptional regulator, LuxR family  46.88 
 
 
901 aa  53.9  0.000003  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_013174  Jden_2514  two component transcriptional regulator, LuxR family  39.06 
 
 
230 aa  53.9  0.000003  Jonesia denitrificans DSM 20603  Bacteria  normal  0.135771  normal  0.887193 
 
 
-
 
NC_007413  Ava_2028  two component LuxR family transcriptional regulator  42.03 
 
 
219 aa  53.9  0.000003  Anabaena variabilis ATCC 29413  Bacteria  normal  0.515359  normal 
 
 
-
 
NC_013757  Gobs_1300  transcriptional regulator, LuxR family  42.25 
 
 
910 aa  53.5  0.000003  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.632041  n/a   
 
 
-
 
NC_013510  Tcur_1998  transcriptional regulator, LuxR family  47.06 
 
 
956 aa  53.5  0.000003  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0120259  n/a   
 
 
-
 
NC_013161  Cyan8802_1605  two component transcriptional regulator, LuxR family  42.86 
 
 
216 aa  53.9  0.000003  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_014248  Aazo_2987  LuxR family two component transcriptional regulator  48.08 
 
 
231 aa  53.9  0.000003  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_4590  two component LuxR family transcriptional regulator  45.9 
 
 
258 aa  53.9  0.000003  Pseudomonas putida W619  Bacteria  normal  normal  0.038066 
 
 
-
 
NC_011726  PCC8801_1580  two component transcriptional regulator, LuxR family  42.86 
 
 
216 aa  53.9  0.000003  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013947  Snas_0645  two component transcriptional regulator, LuxR family  45.16 
 
 
220 aa  53.9  0.000003  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.691779  normal 
 
 
-
 
NC_013174  Jden_1659  two component transcriptional regulator, LuxR family  43.48 
 
 
207 aa  53.5  0.000003  Jonesia denitrificans DSM 20603  Bacteria  normal  0.319135  normal  0.0403017 
 
 
-
 
NC_009512  Pput_0613  two component LuxR family transcriptional regulator  45.9 
 
 
258 aa  53.9  0.000003  Pseudomonas putida F1  Bacteria  normal  0.0682847  normal 
 
 
-
 
NC_009523  RoseRS_4258  two component LuxR family transcriptional regulator  39.78 
 
 
216 aa  53.9  0.000003  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_011831  Cagg_0340  two component transcriptional regulator, LuxR family  43.4 
 
 
217 aa  53.9  0.000003  Chloroflexus aggregans DSM 9485  Bacteria  hitchhiker  0.00614189  hitchhiker  0.00317709 
 
 
-
 
NC_013159  Svir_22850  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  44.78 
 
 
239 aa  53.5  0.000004  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal  0.711047 
 
 
-
 
NC_007513  Syncc9902_1855  LuxR family transcriptional regulator  52.83 
 
 
76 aa  53.5  0.000004  Synechococcus sp. CC9902  Bacteria  normal  0.101838  n/a   
 
 
-
 
NC_008340  Mlg_2151  two component LuxR family transcriptional regulator  47.46 
 
 
264 aa  53.1  0.000004  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal  0.104213 
 
 
-
 
NC_010001  Cphy_0080  two component LuxR family transcriptional regulator  42.86 
 
 
212 aa  53.1  0.000004  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_3616  transcriptional regulator, LuxR family  42.86 
 
 
923 aa  53.5  0.000004  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013757  Gobs_0795  transcriptional regulator, LuxR family  45.31 
 
 
983 aa  53.5  0.000004  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_013530  Xcel_2194  transcriptional regulator, LuxR family  50.85 
 
 
937 aa  53.1  0.000005  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_002947  PP_0574  LuxR family DNA-binding response regulator  45.9 
 
 
258 aa  53.1  0.000005  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_1936  response regulator receiver protein  44.29 
 
 
205 aa  52.8  0.000005  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_008148  Rxyl_2613  two component LuxR family transcriptional regulator  46.15 
 
 
207 aa  53.1  0.000005  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_013235  Namu_2003  two component transcriptional regulator, LuxR family  48.21 
 
 
219 aa  53.1  0.000005  Nakamurella multipartita DSM 44233  Bacteria  normal  0.183245  hitchhiker  0.00373502 
 
 
-
 
NC_010320  Teth514_2042  two component LuxR family transcriptional regulator  36.07 
 
 
208 aa  52.8  0.000005  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_0211  two component LuxR family transcriptional regulator  44.64 
 
 
227 aa  53.1  0.000005  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.196171  normal  0.645513 
 
 
-
 
NC_011901  Tgr7_0272  two component transcriptional regulator, LuxR family  39.08 
 
 
218 aa  52.8  0.000005  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.353555  n/a   
 
 
-
 
NC_011729  PCC7424_0807  two component transcriptional regulator, LuxR family  46.43 
 
 
228 aa  53.1  0.000005  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.218712 
 
 
-
 
NC_009674  Bcer98_1160  two component LuxR family transcriptional regulator  34.67 
 
 
210 aa  52.8  0.000005  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_6351  two component LuxR family transcriptional regulator  42.42 
 
 
244 aa  52.8  0.000006  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_0163  two component transcriptional regulator, LuxR family  40 
 
 
213 aa  52.8  0.000006  Conexibacter woesei DSM 14684  Bacteria  normal  0.107009  normal 
 
 
-
 
NC_011725  BCB4264_A1495  DNA-binding response regulator  34.67 
 
 
210 aa  52.8  0.000006  Bacillus cereus B4264  Bacteria  unclonable  0.0000174821  n/a   
 
 
-
 
NC_013131  Caci_7658  two component transcriptional regulator, LuxR family  42.42 
 
 
219 aa  52.8  0.000006  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_8900  two component transcriptional regulator, LuxR family  45.76 
 
 
221 aa  52.8  0.000006  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.967084  normal 
 
 
-
 
NC_009972  Haur_4039  two component LuxR family transcriptional regulator  42.37 
 
 
250 aa  52.4  0.000007  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.512873  n/a   
 
 
-
 
NC_007333  Tfu_1403  LuxR response regulator receiver  38.16 
 
 
214 aa  52.8  0.000007  Thermobifida fusca YX  Bacteria  normal  0.676683  n/a   
 
 
-
 
NC_014210  Ndas_3609  transcriptional regulator, LuxR family  50.98 
 
 
818 aa  52.4  0.000007  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_014151  Cfla_0278  two component transcriptional regulator, LuxR family  35.4 
 
 
225 aa  52.4  0.000007  Cellulomonas flavigena DSM 20109  Bacteria  normal  hitchhiker  0.000789071 
 
 
-
 
NC_013521  Sked_17000  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  50 
 
 
233 aa  52.4  0.000007  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.523967 
 
 
-
 
NC_009523  RoseRS_0691  two component LuxR family transcriptional regulator  44.64 
 
 
227 aa  52.8  0.000007  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.0394761 
 
 
-
 
NC_010718  Nther_2079  two component transcriptional regulator, LuxR family  40.32 
 
 
212 aa  52.4  0.000007  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  normal 
 
 
-
 
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