More than 300 homologs were found in PanDaTox collection
for query gene Sked_17000 on replicon NC_013521
Organism: Sanguibacter keddieii DSM 10542



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013521  Sked_17000  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  100 
 
 
233 aa  444  1.0000000000000001e-124  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.523967 
 
 
-
 
NC_012669  Bcav_0335  two component transcriptional regulator, LuxR family  66.82 
 
 
220 aa  259  2e-68  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_014158  Tpau_1874  two component transcriptional regulator, LuxR family  59.19 
 
 
213 aa  230  1e-59  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.635222  n/a   
 
 
-
 
NC_014151  Cfla_3222  two component transcriptional regulator, LuxR family  60.63 
 
 
218 aa  229  3e-59  Cellulomonas flavigena DSM 20109  Bacteria  normal  hitchhiker  0.000001545 
 
 
-
 
NC_013093  Amir_2225  two component transcriptional regulator, LuxR family  60.45 
 
 
209 aa  224  1e-57  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_0232  response regulator receiver protein  54.3 
 
 
213 aa  221  4.9999999999999996e-57  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_007333  Tfu_1403  LuxR response regulator receiver  56.25 
 
 
214 aa  221  8e-57  Thermobifida fusca YX  Bacteria  normal  0.676683  n/a   
 
 
-
 
NC_013510  Tcur_2233  two component transcriptional regulator, LuxR family  59.46 
 
 
232 aa  216  2e-55  Thermomonospora curvata DSM 43183  Bacteria  hitchhiker  0.00197033  n/a   
 
 
-
 
NC_014210  Ndas_3601  two component transcriptional regulator, LuxR family  53.33 
 
 
222 aa  207  1e-52  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.324048  normal 
 
 
-
 
NC_014165  Tbis_1846  LuxR family two component transcriptional regulator  52.42 
 
 
226 aa  205  5e-52  Thermobispora bispora DSM 43833  Bacteria  normal  0.699471  normal 
 
 
-
 
NC_009664  Krad_1998  two component transcriptional regulator, LuxR family  52.89 
 
 
225 aa  204  7e-52  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.12496  normal 
 
 
-
 
NC_009664  Krad_4263  two component transcriptional regulator, LuxR family  55.16 
 
 
230 aa  204  1e-51  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.455968 
 
 
-
 
NC_013510  Tcur_2302  two component transcriptional regulator, LuxR family  51.32 
 
 
226 aa  203  2e-51  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0191252  n/a   
 
 
-
 
NC_013739  Cwoe_1269  two component transcriptional regulator, LuxR family  51.77 
 
 
226 aa  202  3e-51  Conexibacter woesei DSM 14684  Bacteria  normal  hitchhiker  0.00432991 
 
 
-
 
NC_013172  Bfae_20460  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  50.66 
 
 
229 aa  202  4e-51  Brachybacterium faecium DSM 4810  Bacteria  normal  0.0212792  n/a   
 
 
-
 
NC_013947  Snas_4946  two component transcriptional regulator, LuxR family  49.78 
 
 
224 aa  201  5e-51  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.13115  normal 
 
 
-
 
NC_013595  Sros_5905  response regulator receiver protein  49.56 
 
 
227 aa  201  9.999999999999999e-51  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0252894  normal  0.145246 
 
 
-
 
NC_013131  Caci_7658  two component transcriptional regulator, LuxR family  53.33 
 
 
219 aa  199  3e-50  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_0956  two component transcriptional regulator, LuxR family  49.77 
 
 
221 aa  198  5e-50  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013521  Sked_03540  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  51.56 
 
 
226 aa  198  7.999999999999999e-50  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_0110  two component transcriptional regulator, LuxR family  50.66 
 
 
222 aa  197  9e-50  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_6235  two component transcriptional regulator, LuxR family  53.33 
 
 
215 aa  197  1.0000000000000001e-49  Actinosynnema mirum DSM 43827  Bacteria  normal  0.502704  n/a   
 
 
-
 
NC_012669  Bcav_1049  two component transcriptional regulator, LuxR family  50.67 
 
 
222 aa  197  2.0000000000000003e-49  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.661499  normal  0.245945 
 
 
-
 
NC_013595  Sros_7301  response regulator receiver protein  48.88 
 
 
220 aa  194  1e-48  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_009664  Krad_1198  two component transcriptional regulator, LuxR family  49.56 
 
 
225 aa  194  1e-48  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.109916  normal  0.0247339 
 
 
-
 
NC_014210  Ndas_1972  two component transcriptional regulator, LuxR family  50.88 
 
 
217 aa  193  2e-48  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  unclonable  0.0000000794288  unclonable  0.0000000332591 
 
 
-
 
NC_013595  Sros_7211  response regulator receiver protein  51.79 
 
 
215 aa  192  4e-48  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.0769384 
 
 
-
 
NC_013530  Xcel_2601  two component transcriptional regulator, LuxR family  51.77 
 
 
234 aa  192  5e-48  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.1212  n/a   
 
 
-
 
NC_013235  Namu_3387  two component transcriptional regulator, LuxR family  51.1 
 
 
223 aa  191  6e-48  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.0000386408  hitchhiker  0.000570848 
 
 
-
 
NC_013595  Sros_1523  response regulator receiver protein  49.11 
 
 
215 aa  191  1e-47  Streptosporangium roseum DSM 43021  Bacteria  normal  0.894169  normal  0.0152488 
 
 
-
 
NC_013595  Sros_8793  response regulator receiver protein  48.46 
 
 
221 aa  190  1e-47  Streptosporangium roseum DSM 43021  Bacteria  normal  0.321987  normal 
 
 
-
 
NC_013739  Cwoe_0356  two component transcriptional regulator, LuxR family  50.89 
 
 
220 aa  190  2e-47  Conexibacter woesei DSM 14684  Bacteria  normal  0.165726  normal  0.0985551 
 
 
-
 
NC_009921  Franean1_3185  two component LuxR family transcriptional regulator  49.78 
 
 
223 aa  190  2e-47  Frankia sp. EAN1pec  Bacteria  normal  0.704721  normal 
 
 
-
 
NC_014151  Cfla_0278  two component transcriptional regulator, LuxR family  48.67 
 
 
225 aa  189  2.9999999999999997e-47  Cellulomonas flavigena DSM 20109  Bacteria  normal  hitchhiker  0.000789071 
 
 
-
 
NC_009664  Krad_1981  two component transcriptional regulator, LuxR family  49.33 
 
 
230 aa  189  2.9999999999999997e-47  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_008699  Noca_1020  response regulator receiver  49.55 
 
 
218 aa  189  4e-47  Nocardioides sp. JS614  Bacteria  normal  0.648692  n/a   
 
 
-
 
NC_014151  Cfla_2842  two component transcriptional regulator, LuxR family  49.78 
 
 
226 aa  189  4e-47  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.622781  decreased coverage  0.00305681 
 
 
-
 
NC_013947  Snas_2037  two component transcriptional regulator, LuxR family  48.02 
 
 
225 aa  188  5.999999999999999e-47  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.137578 
 
 
-
 
NC_013131  Caci_6963  two component transcriptional regulator, LuxR family  50.22 
 
 
225 aa  188  5.999999999999999e-47  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.029709  normal 
 
 
-
 
NC_009380  Strop_1796  response regulator receiver  50.22 
 
 
230 aa  188  8e-47  Salinispora tropica CNB-440  Bacteria  normal  normal 
 
 
-
 
NC_007333  Tfu_1845  LuxR response regulator receiver  49.33 
 
 
215 aa  187  1e-46  Thermobifida fusca YX  Bacteria  hitchhiker  0.00433344  n/a   
 
 
-
 
NC_013530  Xcel_1633  two component transcriptional regulator, LuxR family  51.77 
 
 
241 aa  187  1e-46  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.457155  n/a   
 
 
-
 
NC_009953  Sare_1782  two component LuxR family transcriptional regulator  50.66 
 
 
230 aa  187  1e-46  Salinispora arenicola CNS-205  Bacteria  normal  hitchhiker  0.0025253 
 
 
-
 
NC_013159  Svir_39200  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  47.14 
 
 
218 aa  187  1e-46  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal  0.254077 
 
 
-
 
NC_013595  Sros_5619  response regulator receiver protein  50.22 
 
 
226 aa  186  2e-46  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0556461  normal  0.802866 
 
 
-
 
NC_013441  Gbro_4119  response regulator receiver  49.12 
 
 
230 aa  186  2e-46  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_013530  Xcel_1619  two component transcriptional regulator, LuxR family  48.67 
 
 
234 aa  187  2e-46  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_4479  two component transcriptional regulator, LuxR family  47.77 
 
 
224 aa  186  3e-46  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.518456  normal  0.598935 
 
 
-
 
NC_013510  Tcur_4491  two component transcriptional regulator, LuxR family  47.88 
 
 
225 aa  186  3e-46  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_014151  Cfla_2391  two component transcriptional regulator, LuxR family  48.95 
 
 
239 aa  185  4e-46  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.0696687  hitchhiker  0.00128542 
 
 
-
 
NC_009921  Franean1_4684  two component LuxR family transcriptional regulator  46.26 
 
 
223 aa  185  4e-46  Frankia sp. EAN1pec  Bacteria  normal  0.51425  normal 
 
 
-
 
NC_013093  Amir_7009  two component transcriptional regulator, LuxR family  47.56 
 
 
218 aa  185  4e-46  Actinosynnema mirum DSM 43827  Bacteria  normal  0.0896567  n/a   
 
 
-
 
NC_013172  Bfae_05830  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  53.92 
 
 
238 aa  185  4e-46  Brachybacterium faecium DSM 4810  Bacteria  normal  0.388223  n/a   
 
 
-
 
NC_014210  Ndas_2780  two component transcriptional regulator, LuxR family  51.11 
 
 
219 aa  185  5e-46  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.855193  normal  0.402473 
 
 
-
 
NC_008541  Arth_4134  two component LuxR family transcriptional regulator  46.38 
 
 
250 aa  185  5e-46  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_7105  two component transcriptional regulator, LuxR family  49.55 
 
 
241 aa  185  5e-46  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.106023  normal  0.469545 
 
 
-
 
NC_013204  Elen_2822  two component transcriptional regulator, LuxR family  47.35 
 
 
228 aa  185  6e-46  Eggerthella lenta DSM 2243  Bacteria  normal  0.0415698  normal  0.590713 
 
 
-
 
NC_009664  Krad_4217  two component transcriptional regulator, LuxR family  50.88 
 
 
225 aa  184  8e-46  Kineococcus radiotolerans SRS30216  Bacteria  decreased coverage  0.000816589  normal  0.757819 
 
 
-
 
NC_013947  Snas_1903  two component transcriptional regulator, LuxR family  49.33 
 
 
225 aa  184  8e-46  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.202425  normal  0.182857 
 
 
-
 
NC_013131  Caci_6094  two component transcriptional regulator, LuxR family  50.22 
 
 
235 aa  184  9e-46  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.634688  normal  0.121163 
 
 
-
 
NC_013595  Sros_5304  response regulator receiver protein  49.55 
 
 
220 aa  184  9e-46  Streptosporangium roseum DSM 43021  Bacteria  normal  0.128918  normal 
 
 
-
 
NC_014211  Ndas_4872  two component transcriptional regulator, LuxR family  48.46 
 
 
232 aa  184  1.0000000000000001e-45  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.247388  normal 
 
 
-
 
NC_013521  Sked_26900  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  45.93 
 
 
247 aa  183  2.0000000000000003e-45  Sanguibacter keddieii DSM 10542  Bacteria  hitchhiker  0.00793239  normal  0.935402 
 
 
-
 
NC_013595  Sros_3251  response regulator receiver protein  45.09 
 
 
221 aa  183  2.0000000000000003e-45  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0793449  normal 
 
 
-
 
NC_013739  Cwoe_1616  two component transcriptional regulator, LuxR family  50 
 
 
229 aa  183  2.0000000000000003e-45  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_8900  two component transcriptional regulator, LuxR family  52.21 
 
 
221 aa  183  2.0000000000000003e-45  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.967084  normal 
 
 
-
 
NC_013739  Cwoe_0549  two component transcriptional regulator, LuxR family  47.53 
 
 
220 aa  182  3e-45  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_4002  two component transcriptional regulator, LuxR family  51.33 
 
 
222 aa  182  3e-45  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.947887  normal  0.770727 
 
 
-
 
NC_013947  Snas_4575  two component transcriptional regulator, LuxR family  51.56 
 
 
224 aa  182  4.0000000000000006e-45  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.703378  normal  0.112036 
 
 
-
 
NC_013131  Caci_1951  two component transcriptional regulator, LuxR family  47.35 
 
 
226 aa  182  5.0000000000000004e-45  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.0924411 
 
 
-
 
NC_011886  Achl_3912  two component transcriptional regulator, LuxR family  47.77 
 
 
230 aa  182  6e-45  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_013131  Caci_8412  two component transcriptional regulator, LuxR family  46.88 
 
 
239 aa  181  7e-45  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_4855  two component transcriptional regulator, LuxR family  50 
 
 
244 aa  181  7e-45  Conexibacter woesei DSM 14684  Bacteria  normal  0.093919  normal 
 
 
-
 
NC_014151  Cfla_0857  two component transcriptional regulator, LuxR family  50 
 
 
219 aa  181  9.000000000000001e-45  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.0762303  normal 
 
 
-
 
NC_009664  Krad_1350  two component transcriptional regulator, LuxR family  50.86 
 
 
249 aa  181  1e-44  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.691965  normal 
 
 
-
 
NC_013721  HMPREF0424_0644  response regulator receiver domain protein  38.15 
 
 
261 aa  180  1e-44  Gardnerella vaginalis 409-05  Bacteria  n/a    normal  0.520039 
 
 
-
 
NC_013595  Sros_1910  response regulator receiver protein  48.23 
 
 
226 aa  181  1e-44  Streptosporangium roseum DSM 43021  Bacteria  normal  0.238062  normal  0.36963 
 
 
-
 
NC_013521  Sked_08490  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  46.75 
 
 
236 aa  180  1e-44  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.199706  normal  0.526513 
 
 
-
 
NC_013093  Amir_4260  two component transcriptional regulator, LuxR family  48.02 
 
 
217 aa  179  2e-44  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_7812  two component transcriptional regulator, LuxR family  47.77 
 
 
227 aa  180  2e-44  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013757  Gobs_2015  two component transcriptional regulator, LuxR family  49.56 
 
 
232 aa  180  2e-44  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.706703  n/a   
 
 
-
 
NC_012803  Mlut_21900  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  50.89 
 
 
230 aa  180  2e-44  Micrococcus luteus NCTC 2665  Bacteria  hitchhiker  0.00486265  n/a   
 
 
-
 
NC_013739  Cwoe_3768  two component transcriptional regulator, LuxR family  51.34 
 
 
223 aa  179  2.9999999999999997e-44  Conexibacter woesei DSM 14684  Bacteria  normal  0.28303  normal  0.763501 
 
 
-
 
NC_010816  BLD_0671  putative response regulator  42.11 
 
 
248 aa  179  2.9999999999999997e-44  Bifidobacterium longum DJO10A  Bacteria  normal  0.248332  n/a   
 
 
-
 
NC_013521  Sked_36930  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  48.23 
 
 
222 aa  179  2.9999999999999997e-44  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.811978 
 
 
-
 
NC_012669  Bcav_0236  two component transcriptional regulator, LuxR family  50 
 
 
224 aa  179  2.9999999999999997e-44  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_1883  two component transcriptional regulator, LuxR family  51.79 
 
 
215 aa  179  2.9999999999999997e-44  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.0780809 
 
 
-
 
NC_012669  Bcav_2449  two component transcriptional regulator, LuxR family  49.34 
 
 
220 aa  179  2.9999999999999997e-44  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.729355  normal 
 
 
-
 
NC_012669  Bcav_2710  two component transcriptional regulator, LuxR family  52.65 
 
 
230 aa  179  2.9999999999999997e-44  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.248821  normal  0.606697 
 
 
-
 
NC_013595  Sros_3998  response regulator receiver protein  49.12 
 
 
233 aa  179  4e-44  Streptosporangium roseum DSM 43021  Bacteria  normal  0.363745  normal  0.263649 
 
 
-
 
NC_013131  Caci_5719  two component transcriptional regulator, LuxR family  52.89 
 
 
232 aa  179  4e-44  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013174  Jden_1873  two component transcriptional regulator, LuxR family  43.78 
 
 
233 aa  179  4e-44  Jonesia denitrificans DSM 20603  Bacteria  normal  0.145213  normal  0.385799 
 
 
-
 
NC_013595  Sros_4577  response regulator receiver protein  45.98 
 
 
223 aa  179  4e-44  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.172592 
 
 
-
 
NC_012669  Bcav_0102  two component transcriptional regulator, LuxR family  46.26 
 
 
221 aa  179  4e-44  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.0637251  normal 
 
 
-
 
NC_012669  Bcav_0404  two component transcriptional regulator, LuxR family  47.77 
 
 
218 aa  179  4e-44  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.0987348  normal 
 
 
-
 
NC_009523  RoseRS_3421  two component LuxR family transcriptional regulator  47.3 
 
 
223 aa  178  4.999999999999999e-44  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.0556432 
 
 
-
 
NC_014210  Ndas_1125  two component transcriptional regulator, LuxR family  50.22 
 
 
229 aa  179  4.999999999999999e-44  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.306134 
 
 
-
 
NC_013131  Caci_6529  two component transcriptional regulator, LuxR family  49.33 
 
 
224 aa  178  5.999999999999999e-44  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.270807  normal  0.114568 
 
 
-
 
NC_009921  Franean1_7161  two component LuxR family transcriptional regulator  46.67 
 
 
225 aa  178  5.999999999999999e-44  Frankia sp. EAN1pec  Bacteria  normal  0.0588186  normal  0.118819 
 
 
-
 
NC_013131  Caci_2656  two component transcriptional regulator, LuxR family  47.19 
 
 
226 aa  178  8e-44  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.161573  normal 
 
 
-
 
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