| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_0619 |
|---|
| Symbol | |
|---|
| ID | 5868365 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | - |
|---|
| Start bp | 706763 |
|---|
| End bp | 707539 |
|---|
| Gene Length | 777 bp |
|---|
| Protein Length | 258 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 641545707 |
|---|
| Product | two component LuxR family transcriptional regulator |
|---|
| Protein accession | YP_001666866 |
|---|
| Protein GI | 167031635 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 34 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.0738447 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGTCCAGAC CAGTGAGTGA AGTGAAGGTG TTGGTGGTTG ATGACCAACC GGTCATTGTC
GAACAACTGT GTGAATTCCT CGAAACCAAG GGCTATGTCT GCATACCAGC CCACTCAACT
GACGAAGCTA TCGAGCGATA TGTGGCAGAC CCGGCCATCG GTCTGCTCAT CTGTGACCTG
CACATGCCGG AGCGAGATGG CATTGAGCTG GTACGCGCCT TGAAGGGGCT CGACGGCAGC
CCGCGCATGT TCGAAGCCAT CATGTTGACT GGGCGTGCCG AGAAACAGGA CGTGATCCGC
GCGCTACGCG AAGGCTTTGC CGACTACTAC CAGAAGCCGA TGGACCTTGA CGAGCTGCTG
GCGGGCGTAC GCCGGCAGGA AGAAGCCTTG CTGGAGCGCC AGCGAAACTT CCGTGATCTG
GGTGGGTTGA ACCAGCGCCT GCAAGAGCTG GCCGACTCAG TGGACGAACT GTATCAGGAC
CTGGAAAAAG CCCGTGGCCA AGGCACCCAC CGGCGTGCCA GTGACGTGGA GGAAAGCGAA
AGCGAACTGC CAGCGGCGTT CGAGAAGCTG TCGCCACGCC AATTGGAAGT GGCGCGCCTG
GTCAGCAAAG GCAAGACCAA TTACCAGATC GCCTGTGAGC TGGGCATTAC CGAGAATACC
GTGAAGCTTT ACGTGTCACA GGTGTTGCGC CTGACCCACA TGCACAACCG CACCCAGCTG
GCACTGGCGC TTACCCCTAG CTCATCGCCG GTGCATCAGC GGTTTACCAC CCATTGA
|
|---|
| Protein sequence | MSRPVSEVKV LVVDDQPVIV EQLCEFLETK GYVCIPAHST DEAIERYVAD PAIGLLICDL
HMPERDGIEL VRALKGLDGS PRMFEAIMLT GRAEKQDVIR ALREGFADYY QKPMDLDELL
AGVRRQEEAL LERQRNFRDL GGLNQRLQEL ADSVDELYQD LEKARGQGTH RRASDVEESE
SELPAAFEKL SPRQLEVARL VSKGKTNYQI ACELGITENT VKLYVSQVLR LTHMHNRTQL
ALALTPSSSP VHQRFTTH
|
|---|
| |