| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_3625 |
|---|
| Symbol | |
|---|
| ID | 8334978 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | + |
|---|
| Start bp | 4054886 |
|---|
| End bp | 4057663 |
|---|
| Gene Length | 2778 bp |
|---|
| Protein Length | 925 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 644956766 |
|---|
| Product | transcriptional regulator, LuxR family |
|---|
| Protein accession | YP_003114369 |
|---|
| Protein GI | 256392805 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3899] Predicted ATPase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCCTGAAC CGTCGGCGCT CCTGGGCCGG GACGAGGAGT GTCAGGCCAT TGATGATCTC
GTCGCGCGCG TCCGCGAAGG ACTGAGCGGG GCGCTGGTGA TCTCCGGCGA GGCCGGCATC
GGCAAGACCC GGCTGCTGAC CTACGCCGCC GAGGCTGCCG GCGATCTTCA GACGGCGCGC
GTCACCGGGG TCAAGACCGA GTCCCAACTC GGATACGCCG CGCTGCACCG GCTGCTGCTT
CCCTTCCTGG ACCGGCTCGA TCGGCTCCCC GATCCGCAGC GTGAGGCACT CGGCGCGGCG
TTCGGGATGG TCGCGGCGCC GCCGGCCGAT CGTTTCCGGA CGGGTCTGGC GACGCTCACG
CTGCTGGCCG ACGTCGTCGG GGACGGGCCG CTGATGTGCC TCGTCGACGA CGCGCAGTGG
CTGGACCGGG AATCGTTGGA GGCATTGGCT TTCGTCGGTC GTCGCTTGCA TGCTGATGGC
ATCGGGCTGG TGATGTGCGT GCGTGACGGA GAGCCCGGCG CCTTGCCGAT CGACGGATTG
CCCGCGATCC GGCTCACCGG TTTGTCCGAC GCCGACGCCG GTCGACTGCT TGCCGCGCTG
CCTGTCGCGT CGCTCGGGCC CGCTTCGCCG ACGCTCTCCC GGATCGTCGC CGAGGCTGGA
GGGAACCCGC TCGCGCTGAG CGAGTTCACC GCAGACCTGG CTGGCGGGAC TGTGCCGGCG
GCTGCGCCTG TGCCTTTGCT GTCGGCTCCG CGGTCGCTCG GTCCGCGGCT CGAAGCGCAC
TTCCAGCGGC AGGTGGATTC CCTGCCGGAG GAGACGAAGT CGTTGCTGTT GCTGCTGTCT
GTCGCGCCTG CCGACGACCC GGTCGTCGTG TGGCGTGCGG CGGGAGAGCT CGGGTTGTCG
GCGCAGGCGC TGGACGCGGC GGTCGCCGGC GGGATCCTCA CCGTGGACCC GCATCCGGTC
TTCCGTCATC CGCTGATCCG CTCGGCGGTG CACTCTGCAG CCGCACCGGC GGAACTGCGG
CGCGTCCATC AGGTGCTCGC CGAGGCGATC GACCCCCTGA CGGGACCTGA GCGGCGGGCT
TGGCATCTGG CTGCGGCGGT GGTCGGGCTC GATGAAGAGG TCGCCGCGGA GTTGGAACGG
GTCGCCGAGC GCGCGCAGGG ACGTGGCGGC TACGCCGCGC AGGCGGCGTT CCTGTTGGCG
GCAGCCGAGT TGAGCCCCGA TCCGCAGGCT CGTGCCGAGC GGTACTCCGC TGCGGCTCAG
GCGCATCTGT ACATCGGCGA ATCGGCTGCG GCTCAGCCGA TGCTGGATCA CGCCGAGTCC
TATCCGGGCA CATCGACGTC ACGCGCGACG ATTCGACGAC TGCGCGCGAT GGTCGAATGG
CTTGAGGGAC GGATCGCCAT GGCGCCGGCG ATCCTGATGG CTGCCGCGCA GGACGTGATC
GCGCACGACG AGCCGCTGGC GCGCGACATG GTTTTCGAGG CGCTCTCCGC CGCGATGATG
ACGCGGGAGC ACACCGTCGG CATGACGCTG GACGAGCTGG CTCGCCAGGC GCTCGCCATG
CCGTGGGACC CGTCGCGGCC GCAGACCGTG TCCGATGTGG TGATCGACGC CTACTGCACG
CGCATCGCCG ACGGCTACGC GGCGGCGGTG CCGAAGCTGC GGGCCGCGGT TGAGGCGTTG
TGCACCGGCG ATCTGGGGGA CATCGGCATG CCGATCGCGC TGCTCGGCTT CGTCGGCGCC
GAAGACCTCT GGGACGAGGA GGGCTATCGA GCGGTGCTCG GACGCTTCAT CGAGGTCAGC
CGCGAGCGCG GCGCCGTCCA CTCCCTCGCC GTGGCGTTGA ACAGCCTCGC CGTCGCCGAG
CTGTGGTCGG GGCGGTTCGG CAAGGCAGAG TCCTGCTACG ACGAATCGGA CGACATCTAC
GCCTCGATCG TCAACATGCC GATCGGCGCG TCACACCGCG TGGAGCTGCG GGCGTGGCAG
GGTGCTGAGA CGCAGCTGCG GGTCGGCGCG GACAGCGCGA TCCAGGTGTG GGGCGAGCAG
CTGGGCTACG CAGTGCTGAC CTGCCACGCG CACTACTCGC TGGCCGTCTT CGAACTGAGC
GCCGGGCGGT TTCGGGAGGC GCTGGCCTGG GCCCGCCTCG AATATGACAA CGACGTGCCC
GGGCAGGGCA ATCGGCTGCT CCCGGAGGTG ATCGAGGCTG CGTCCCGAGT CGGCGACCGG
GAGCTGGCTT CGGCGGCACT GTCGCGGCTG GCGGAGCGTG CGTCGCTCAG CGGGACGGCG
TGGGCGCTCG GCGTGCTGGC GCGTTGCAGG GCCCTGATGT CCGCAGACGA CAAGGCGGAG
AGCCTCTACG AGGCCGCACT GCGGCATCTG AGCAGCACCA CCGTGGCCAC CGACCTCGCC
CGCACGTACC TGCTCTACGG CGAGTGGCTC CGGCGTCGCG ACCGTCTCGC CGACGCGCGG
ACTCAGTTGC GCAAGGCGCA CGACATGTTC ACCGACATGG GAGCGGTCGG TTTCGCCGAA
CGCGCCCGCA CCGAACTCCA GTCCGCCGGA GAACACACCC GCAAGCACAC CGCCCCGGCC
GCCCACCCTC TGACGCCCCA GGAGAAGCAG GTCGCGAGCC TGGCCGCCAC CGGCTCCACC
AACACCGAGA TCGCCACCCG CCTGTTCATC ACCACATCGA CCGTCGAGTA CCACCTGAAC
AAGGTGTTCC GAAAGCTCGA CATCACCTCT CGCCGCCAGC TGGCCGACAT CTTCGGCGAC
GCCGCGCAAG CAGCCTGA
|
|---|
| Protein sequence | MPEPSALLGR DEECQAIDDL VARVREGLSG ALVISGEAGI GKTRLLTYAA EAAGDLQTAR
VTGVKTESQL GYAALHRLLL PFLDRLDRLP DPQREALGAA FGMVAAPPAD RFRTGLATLT
LLADVVGDGP LMCLVDDAQW LDRESLEALA FVGRRLHADG IGLVMCVRDG EPGALPIDGL
PAIRLTGLSD ADAGRLLAAL PVASLGPASP TLSRIVAEAG GNPLALSEFT ADLAGGTVPA
AAPVPLLSAP RSLGPRLEAH FQRQVDSLPE ETKSLLLLLS VAPADDPVVV WRAAGELGLS
AQALDAAVAG GILTVDPHPV FRHPLIRSAV HSAAAPAELR RVHQVLAEAI DPLTGPERRA
WHLAAAVVGL DEEVAAELER VAERAQGRGG YAAQAAFLLA AAELSPDPQA RAERYSAAAQ
AHLYIGESAA AQPMLDHAES YPGTSTSRAT IRRLRAMVEW LEGRIAMAPA ILMAAAQDVI
AHDEPLARDM VFEALSAAMM TREHTVGMTL DELARQALAM PWDPSRPQTV SDVVIDAYCT
RIADGYAAAV PKLRAAVEAL CTGDLGDIGM PIALLGFVGA EDLWDEEGYR AVLGRFIEVS
RERGAVHSLA VALNSLAVAE LWSGRFGKAE SCYDESDDIY ASIVNMPIGA SHRVELRAWQ
GAETQLRVGA DSAIQVWGEQ LGYAVLTCHA HYSLAVFELS AGRFREALAW ARLEYDNDVP
GQGNRLLPEV IEAASRVGDR ELASAALSRL AERASLSGTA WALGVLARCR ALMSADDKAE
SLYEAALRHL SSTTVATDLA RTYLLYGEWL RRRDRLADAR TQLRKAHDMF TDMGAVGFAE
RARTELQSAG EHTRKHTAPA AHPLTPQEKQ VASLAATGST NTEIATRLFI TTSTVEYHLN
KVFRKLDITS RRQLADIFGD AAQAA
|
|---|
| |