Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Caci_3625 |
Symbol | |
ID | 8334978 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Catenulispora acidiphila DSM 44928 |
Kingdom | Bacteria |
Replicon accession | NC_013131 |
Strand | + |
Start bp | 4054886 |
End bp | 4057663 |
Gene Length | 2778 bp |
Protein Length | 925 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 644956766 |
Product | transcriptional regulator, LuxR family |
Protein accession | YP_003114369 |
Protein GI | 256392805 |
COG category | [R] General function prediction only |
COG ID | [COG3899] Predicted ATPase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 35 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGCCTGAAC CGTCGGCGCT CCTGGGCCGG GACGAGGAGT GTCAGGCCAT TGATGATCTC GTCGCGCGCG TCCGCGAAGG ACTGAGCGGG GCGCTGGTGA TCTCCGGCGA GGCCGGCATC GGCAAGACCC GGCTGCTGAC CTACGCCGCC GAGGCTGCCG GCGATCTTCA GACGGCGCGC GTCACCGGGG TCAAGACCGA GTCCCAACTC GGATACGCCG CGCTGCACCG GCTGCTGCTT CCCTTCCTGG ACCGGCTCGA TCGGCTCCCC GATCCGCAGC GTGAGGCACT CGGCGCGGCG TTCGGGATGG TCGCGGCGCC GCCGGCCGAT CGTTTCCGGA CGGGTCTGGC GACGCTCACG CTGCTGGCCG ACGTCGTCGG GGACGGGCCG CTGATGTGCC TCGTCGACGA CGCGCAGTGG CTGGACCGGG AATCGTTGGA GGCATTGGCT TTCGTCGGTC GTCGCTTGCA TGCTGATGGC ATCGGGCTGG TGATGTGCGT GCGTGACGGA GAGCCCGGCG CCTTGCCGAT CGACGGATTG CCCGCGATCC GGCTCACCGG TTTGTCCGAC GCCGACGCCG GTCGACTGCT TGCCGCGCTG CCTGTCGCGT CGCTCGGGCC CGCTTCGCCG ACGCTCTCCC GGATCGTCGC CGAGGCTGGA GGGAACCCGC TCGCGCTGAG CGAGTTCACC GCAGACCTGG CTGGCGGGAC TGTGCCGGCG GCTGCGCCTG TGCCTTTGCT GTCGGCTCCG CGGTCGCTCG GTCCGCGGCT CGAAGCGCAC TTCCAGCGGC AGGTGGATTC CCTGCCGGAG GAGACGAAGT CGTTGCTGTT GCTGCTGTCT GTCGCGCCTG CCGACGACCC GGTCGTCGTG TGGCGTGCGG CGGGAGAGCT CGGGTTGTCG GCGCAGGCGC TGGACGCGGC GGTCGCCGGC GGGATCCTCA CCGTGGACCC GCATCCGGTC TTCCGTCATC CGCTGATCCG CTCGGCGGTG CACTCTGCAG CCGCACCGGC GGAACTGCGG CGCGTCCATC AGGTGCTCGC CGAGGCGATC GACCCCCTGA CGGGACCTGA GCGGCGGGCT TGGCATCTGG CTGCGGCGGT GGTCGGGCTC GATGAAGAGG TCGCCGCGGA GTTGGAACGG GTCGCCGAGC GCGCGCAGGG ACGTGGCGGC TACGCCGCGC AGGCGGCGTT CCTGTTGGCG GCAGCCGAGT TGAGCCCCGA TCCGCAGGCT CGTGCCGAGC GGTACTCCGC TGCGGCTCAG GCGCATCTGT ACATCGGCGA ATCGGCTGCG GCTCAGCCGA TGCTGGATCA CGCCGAGTCC TATCCGGGCA CATCGACGTC ACGCGCGACG ATTCGACGAC TGCGCGCGAT GGTCGAATGG CTTGAGGGAC GGATCGCCAT GGCGCCGGCG ATCCTGATGG CTGCCGCGCA GGACGTGATC GCGCACGACG AGCCGCTGGC GCGCGACATG GTTTTCGAGG CGCTCTCCGC CGCGATGATG ACGCGGGAGC ACACCGTCGG CATGACGCTG GACGAGCTGG CTCGCCAGGC GCTCGCCATG CCGTGGGACC CGTCGCGGCC GCAGACCGTG TCCGATGTGG TGATCGACGC CTACTGCACG CGCATCGCCG ACGGCTACGC GGCGGCGGTG CCGAAGCTGC GGGCCGCGGT TGAGGCGTTG TGCACCGGCG ATCTGGGGGA CATCGGCATG CCGATCGCGC TGCTCGGCTT CGTCGGCGCC GAAGACCTCT GGGACGAGGA GGGCTATCGA GCGGTGCTCG GACGCTTCAT CGAGGTCAGC CGCGAGCGCG GCGCCGTCCA CTCCCTCGCC GTGGCGTTGA ACAGCCTCGC CGTCGCCGAG CTGTGGTCGG GGCGGTTCGG CAAGGCAGAG TCCTGCTACG ACGAATCGGA CGACATCTAC GCCTCGATCG TCAACATGCC GATCGGCGCG TCACACCGCG TGGAGCTGCG GGCGTGGCAG GGTGCTGAGA CGCAGCTGCG GGTCGGCGCG GACAGCGCGA TCCAGGTGTG GGGCGAGCAG CTGGGCTACG CAGTGCTGAC CTGCCACGCG CACTACTCGC TGGCCGTCTT CGAACTGAGC GCCGGGCGGT TTCGGGAGGC GCTGGCCTGG GCCCGCCTCG AATATGACAA CGACGTGCCC GGGCAGGGCA ATCGGCTGCT CCCGGAGGTG ATCGAGGCTG CGTCCCGAGT CGGCGACCGG GAGCTGGCTT CGGCGGCACT GTCGCGGCTG GCGGAGCGTG CGTCGCTCAG CGGGACGGCG TGGGCGCTCG GCGTGCTGGC GCGTTGCAGG GCCCTGATGT CCGCAGACGA CAAGGCGGAG AGCCTCTACG AGGCCGCACT GCGGCATCTG AGCAGCACCA CCGTGGCCAC CGACCTCGCC CGCACGTACC TGCTCTACGG CGAGTGGCTC CGGCGTCGCG ACCGTCTCGC CGACGCGCGG ACTCAGTTGC GCAAGGCGCA CGACATGTTC ACCGACATGG GAGCGGTCGG TTTCGCCGAA CGCGCCCGCA CCGAACTCCA GTCCGCCGGA GAACACACCC GCAAGCACAC CGCCCCGGCC GCCCACCCTC TGACGCCCCA GGAGAAGCAG GTCGCGAGCC TGGCCGCCAC CGGCTCCACC AACACCGAGA TCGCCACCCG CCTGTTCATC ACCACATCGA CCGTCGAGTA CCACCTGAAC AAGGTGTTCC GAAAGCTCGA CATCACCTCT CGCCGCCAGC TGGCCGACAT CTTCGGCGAC GCCGCGCAAG CAGCCTGA
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Protein sequence | MPEPSALLGR DEECQAIDDL VARVREGLSG ALVISGEAGI GKTRLLTYAA EAAGDLQTAR VTGVKTESQL GYAALHRLLL PFLDRLDRLP DPQREALGAA FGMVAAPPAD RFRTGLATLT LLADVVGDGP LMCLVDDAQW LDRESLEALA FVGRRLHADG IGLVMCVRDG EPGALPIDGL PAIRLTGLSD ADAGRLLAAL PVASLGPASP TLSRIVAEAG GNPLALSEFT ADLAGGTVPA AAPVPLLSAP RSLGPRLEAH FQRQVDSLPE ETKSLLLLLS VAPADDPVVV WRAAGELGLS AQALDAAVAG GILTVDPHPV FRHPLIRSAV HSAAAPAELR RVHQVLAEAI DPLTGPERRA WHLAAAVVGL DEEVAAELER VAERAQGRGG YAAQAAFLLA AAELSPDPQA RAERYSAAAQ AHLYIGESAA AQPMLDHAES YPGTSTSRAT IRRLRAMVEW LEGRIAMAPA ILMAAAQDVI AHDEPLARDM VFEALSAAMM TREHTVGMTL DELARQALAM PWDPSRPQTV SDVVIDAYCT RIADGYAAAV PKLRAAVEAL CTGDLGDIGM PIALLGFVGA EDLWDEEGYR AVLGRFIEVS RERGAVHSLA VALNSLAVAE LWSGRFGKAE SCYDESDDIY ASIVNMPIGA SHRVELRAWQ GAETQLRVGA DSAIQVWGEQ LGYAVLTCHA HYSLAVFELS AGRFREALAW ARLEYDNDVP GQGNRLLPEV IEAASRVGDR ELASAALSRL AERASLSGTA WALGVLARCR ALMSADDKAE SLYEAALRHL SSTTVATDLA RTYLLYGEWL RRRDRLADAR TQLRKAHDMF TDMGAVGFAE RARTELQSAG EHTRKHTAPA AHPLTPQEKQ VASLAATGST NTEIATRLFI TTSTVEYHLN KVFRKLDITS RRQLADIFGD AAQAA
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