More than 300 homologs were found in PanDaTox collection
for query gene Psyr_4376 on replicon NC_007005
Organism: Pseudomonas syringae pv. syringae B728a



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007005  Psyr_4376  LuxR response regulator receiver  100 
 
 
265 aa  545  1e-154  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.945677 
 
 
-
 
NC_004578  PSPTO_4836  DNA binding response regulator, LuxR family  86.04 
 
 
260 aa  456  1e-127  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.765839  n/a   
 
 
-
 
NC_007492  Pfl01_0640  two component LuxR family transcriptional regulator  66.8 
 
 
269 aa  325  4.0000000000000003e-88  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_0619  two component LuxR family transcriptional regulator  60.87 
 
 
258 aa  308  4e-83  Pseudomonas putida GB-1  Bacteria  normal  normal  0.0738447 
 
 
-
 
NC_010501  PputW619_4590  two component LuxR family transcriptional regulator  60.7 
 
 
258 aa  307  1.0000000000000001e-82  Pseudomonas putida W619  Bacteria  normal  normal  0.038066 
 
 
-
 
NC_009512  Pput_0613  two component LuxR family transcriptional regulator  60.32 
 
 
258 aa  305  4.0000000000000004e-82  Pseudomonas putida F1  Bacteria  normal  0.0682847  normal 
 
 
-
 
NC_002947  PP_0574  LuxR family DNA-binding response regulator  60.32 
 
 
258 aa  305  7e-82  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_008463  PA14_55810  putative two-component response regulator  47.64 
 
 
275 aa  232  5e-60  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_4863  LuxR family DNA-binding response regulator  47.66 
 
 
272 aa  228  7e-59  Pseudomonas aeruginosa PA7  Bacteria  normal  0.090532  n/a   
 
 
-
 
NC_008340  Mlg_2151  two component LuxR family transcriptional regulator  38.91 
 
 
264 aa  162  7e-39  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal  0.104213 
 
 
-
 
NC_011729  PCC7424_2881  two component transcriptional regulator, LuxR family  27.2 
 
 
212 aa  89  7e-17  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_011726  PCC8801_1580  two component transcriptional regulator, LuxR family  26.25 
 
 
216 aa  88.6  9e-17  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013161  Cyan8802_1605  two component transcriptional regulator, LuxR family  26.25 
 
 
216 aa  88.6  9e-17  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_3628  two component LuxR family transcriptional regulator  27.08 
 
 
225 aa  88.6  1e-16  Anabaena variabilis ATCC 29413  Bacteria  normal  0.717242  normal  0.142765 
 
 
-
 
NC_014248  Aazo_2887  LuxR family two component transcriptional regulator  27.16 
 
 
225 aa  87.4  2e-16  'Nostoc azollae' 0708  Bacteria  normal  0.526109  n/a   
 
 
-
 
NC_013595  Sros_1417  response regulator receiver protein  31.8 
 
 
234 aa  87  3e-16  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.0224272 
 
 
-
 
NC_011901  Tgr7_2171  two component transcriptional regulator, LuxR family  28.33 
 
 
227 aa  86.3  5e-16  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_007794  Saro_1236  two component LuxR family transcriptional regulator  29.34 
 
 
208 aa  85.9  7e-16  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.23752  n/a   
 
 
-
 
NC_009664  Krad_3810  two component transcriptional regulator, LuxR family  30.99 
 
 
236 aa  85.1  9e-16  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.225059  normal  0.0261757 
 
 
-
 
NC_013521  Sked_37860  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  29.02 
 
 
221 aa  82.4  0.000000000000006  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_008312  Tery_4323  two component LuxR family transcriptional regulator  26.05 
 
 
215 aa  81.6  0.00000000000001  Trichodesmium erythraeum IMS101  Bacteria  normal  0.115662  normal  0.727411 
 
 
-
 
NC_008340  Mlg_1669  two component LuxR family transcriptional regulator  26.67 
 
 
221 aa  81.3  0.00000000000002  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal 
 
 
-
 
NC_008345  Sfri_0620  two component transcriptional regulator, LuxR family protein  28.81 
 
 
209 aa  80.9  0.00000000000002  Shewanella frigidimarina NCIMB 400  Bacteria  unclonable  0.000000000275655  n/a   
 
 
-
 
NC_014165  Tbis_0775  LuxR family two component transcriptional regulator  30.96 
 
 
234 aa  80.5  0.00000000000003  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.336237 
 
 
-
 
NC_011884  Cyan7425_0981  two component transcriptional regulator, LuxR family  26.83 
 
 
221 aa  79.3  0.00000000000006  Cyanothece sp. PCC 7425  Bacteria  normal  normal  0.416641 
 
 
-
 
NC_007964  Nham_0872  two component LuxR family transcriptional regulator  26.89 
 
 
210 aa  79.3  0.00000000000007  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_010571  Oter_0804  two component LuxR family transcriptional regulator  25.31 
 
 
204 aa  79  0.00000000000008  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
NC_007604  Synpcc7942_1860  two component LuxR family transcriptional regulator  27.31 
 
 
235 aa  79  0.00000000000008  Synechococcus elongatus PCC 7942  Bacteria  normal  normal 
 
 
-
 
NC_013525  Tter_1109  two component transcriptional regulator, LuxR family  28.24 
 
 
218 aa  79  0.00000000000008  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_013093  Amir_7055  two component transcriptional regulator, LuxR family  28.15 
 
 
219 aa  78.6  0.00000000000009  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_014210  Ndas_1125  two component transcriptional regulator, LuxR family  31.05 
 
 
229 aa  78.6  0.00000000000009  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.306134 
 
 
-
 
NC_009656  PSPA7_1229  transcriptional regulator NarL  27.17 
 
 
219 aa  78.6  0.00000000000009  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_0970  two component LuxR family transcriptional regulator  27.64 
 
 
209 aa  78.2  0.0000000000001  Shewanella woodyi ATCC 51908  Bacteria  normal  0.0307407  normal 
 
 
-
 
NC_008463  PA14_13730  transcriptional regulator NarL  27.17 
 
 
219 aa  78.2  0.0000000000001  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.817999 
 
 
-
 
NC_009719  Plav_2358  response regulator receiver protein  27.31 
 
 
233 aa  77.8  0.0000000000002  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.119902  normal  0.5156 
 
 
-
 
NC_007955  Mbur_2108  multisensor signal transduction histidine kinase  36.72 
 
 
492 aa  77.4  0.0000000000002  Methanococcoides burtonii DSM 6242  Archaea  normal  n/a   
 
 
-
 
NC_008789  Hhal_1965  two component LuxR family transcriptional regulator  28.81 
 
 
217 aa  77.4  0.0000000000002  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_010803  Clim_1287  two component, sigma54 specific, transcriptional regulator, Fis family  32.61 
 
 
452 aa  77.4  0.0000000000003  Chlorobium limicola DSM 245  Bacteria  normal  0.541874  n/a   
 
 
-
 
NC_009092  Shew_0842  two component LuxR family transcriptional regulator  26.75 
 
 
209 aa  76.6  0.0000000000004  Shewanella loihica PV-4  Bacteria  hitchhiker  0.00000336278  normal 
 
 
-
 
NC_009767  Rcas_1355  two component LuxR family transcriptional regulator  30.08 
 
 
230 aa  76.6  0.0000000000004  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_012034  Athe_2627  two component transcriptional regulator, LuxR family  27.64 
 
 
211 aa  76.6  0.0000000000004  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_1240  two component transcriptional regulator, winged helix family  33.09 
 
 
227 aa  76.6  0.0000000000004  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.729355  normal 
 
 
-
 
NC_011138  MADE_02260  Response regulator, LuxR family (CheY, HTH domains)  27.24 
 
 
222 aa  76.3  0.0000000000005  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_1903  two component transcriptional regulator, LuxR family  28.69 
 
 
225 aa  76.3  0.0000000000005  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.202425  normal  0.182857 
 
 
-
 
NC_009921  Franean1_5512  two component LuxR family transcriptional regulator  30.89 
 
 
250 aa  75.9  0.0000000000006  Frankia sp. EAN1pec  Bacteria  normal  normal  0.631776 
 
 
-
 
NC_008751  Dvul_0403  response regulator receiver sensor signal transduction histidine kinase  32.82 
 
 
374 aa  75.9  0.0000000000006  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.150899 
 
 
-
 
NC_007335  PMN2A_1537  two component LuxR family transcriptional regulator  25.62 
 
 
242 aa  75.9  0.0000000000007  Prochlorococcus marinus str. NATL2A  Bacteria  normal  n/a   
 
 
-
 
NC_009052  Sbal_0792  two component LuxR family transcriptional regulator  27.16 
 
 
209 aa  75.5  0.0000000000008  Shewanella baltica OS155  Bacteria  hitchhiker  0.000000151034  n/a   
 
 
-
 
NC_013757  Gobs_4064  two component transcriptional regulator, LuxR family  29.96 
 
 
217 aa  75.5  0.0000000000008  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_8900  two component transcriptional regulator, LuxR family  29.32 
 
 
221 aa  75.5  0.0000000000008  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.967084  normal 
 
 
-
 
NC_009997  Sbal195_3836  two component LuxR family transcriptional regulator  27.16 
 
 
209 aa  75.5  0.0000000000008  Shewanella baltica OS195  Bacteria  hitchhiker  0.00000136397  normal  0.0231387 
 
 
-
 
NC_009832  Spro_2900  transcriptional regulator NarL  26.8 
 
 
216 aa  75.5  0.0000000000008  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_008321  Shewmr4_0657  two component LuxR family transcriptional regulator  27.16 
 
 
209 aa  75.5  0.0000000000008  Shewanella sp. MR-4  Bacteria  hitchhiker  0.000000493749  normal  0.229808 
 
 
-
 
NC_008322  Shewmr7_3365  two component LuxR family transcriptional regulator  27.16 
 
 
209 aa  75.5  0.0000000000008  Shewanella sp. MR-7  Bacteria  hitchhiker  0.0000651556  normal  0.0242167 
 
 
-
 
NC_009665  Shew185_3713  two component LuxR family transcriptional regulator  27.16 
 
 
209 aa  75.5  0.0000000000008  Shewanella baltica OS185  Bacteria  hitchhiker  0.000000000161759  n/a   
 
 
-
 
NC_008577  Shewana3_0656  two component LuxR family transcriptional regulator  27.16 
 
 
209 aa  75.5  0.0000000000008  Shewanella sp. ANA-3  Bacteria  hitchhiker  0.000000830399  normal  0.140804 
 
 
-
 
NC_004347  SO_3982  DNA-binding nitrate/nitrite response regulator  27.57 
 
 
209 aa  75.5  0.0000000000009  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_011663  Sbal223_3654  two component transcriptional regulator, LuxR family  27.16 
 
 
209 aa  75.5  0.0000000000009  Shewanella baltica OS223  Bacteria  unclonable  0.000000000464283  hitchhiker  0.00000781977 
 
 
-
 
NC_011891  A2cp1_0533  two component, sigma54 specific, transcriptional regulator, Fis family  31.88 
 
 
443 aa  75.1  0.000000000001  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.141325  n/a   
 
 
-
 
NC_009901  Spea_0829  two component LuxR family transcriptional regulator  27.57 
 
 
209 aa  75.5  0.000000000001  Shewanella pealeana ATCC 700345  Bacteria  hitchhiker  0.00236991  n/a   
 
 
-
 
NC_009485  BBta_2788  response regulator FixJ  26.32 
 
 
205 aa  75.1  0.000000000001  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.0210669  normal  0.0766422 
 
 
-
 
NC_010625  Bphy_5955  two component LuxR family transcriptional regulator  29.8 
 
 
215 aa  74.7  0.000000000001  Burkholderia phymatum STM815  Bacteria  normal  normal  0.132796 
 
 
-
 
NC_014148  Plim_0679  response regulator receiver  31.21 
 
 
337 aa  74.7  0.000000000001  Planctomyces limnophilus DSM 3776  Bacteria  normal  0.0836964  n/a   
 
 
-
 
NC_011145  AnaeK_0537  two component, sigma54 specific, transcriptional regulator, Fis family  31.88 
 
 
446 aa  75.1  0.000000000001  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_012793  GWCH70_0170  two component transcriptional regulator, winged helix family  35.07 
 
 
232 aa  74.3  0.000000000002  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_1979  response regulator of RpoS  28 
 
 
338 aa  73.9  0.000000000002  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.46167  n/a   
 
 
-
 
NC_012560  Avin_32720  Response regulator  30.34 
 
 
394 aa  74.3  0.000000000002  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_0504  two component, sigma54 specific, Fis family transcriptional regulator  31.88 
 
 
443 aa  74.3  0.000000000002  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_4323  two component LuxR family transcriptional regulator  26.75 
 
 
246 aa  73.9  0.000000000002  Roseiflexus sp. RS-1  Bacteria  normal  0.239635  normal  0.317944 
 
 
-
 
NC_013946  Mrub_0806  two component LuxR family transcriptional regulator  27.05 
 
 
216 aa  74.7  0.000000000002  Meiothermus ruber DSM 1279  Bacteria  normal  normal 
 
 
-
 
NC_011769  DvMF_1991  response regulator receiver protein  34.45 
 
 
153 aa  73.9  0.000000000002  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_011729  PCC7424_0031  two component transcriptional regulator, LuxR family  26.75 
 
 
229 aa  74.3  0.000000000002  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_008819  NATL1_02441  two-component response regulator  25.62 
 
 
242 aa  74.7  0.000000000002  Prochlorococcus marinus str. NATL1A  Bacteria  normal  0.72299  normal 
 
 
-
 
NC_009656  PSPA7_2359  putative two-component response regulator  30.77 
 
 
394 aa  73.9  0.000000000003  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_009976  P9211_01871  two-component response regulator  25.2 
 
 
242 aa  73.6  0.000000000003  Prochlorococcus marinus str. MIT 9211  Bacteria  normal  normal 
 
 
-
 
NC_011658  BCAH187_A0780  DNA-binding response regulator  28.48 
 
 
225 aa  73.6  0.000000000003  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_007333  Tfu_2233  LuxR response regulator receiver  30 
 
 
228 aa  73.6  0.000000000003  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_009438  Sputcn32_0683  two component LuxR family transcriptional regulator  26.75 
 
 
209 aa  73.6  0.000000000003  Shewanella putrefaciens CN-32  Bacteria  unclonable  0.000000000388278  n/a   
 
 
-
 
NC_007760  Adeh_2239  two component, sigma54 specific, Fis family transcriptional regulator  30.83 
 
 
466 aa  73.6  0.000000000003  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_1568  response regulator receiver protein  31.37 
 
 
262 aa  73.6  0.000000000003  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_1635  two component, sigma54 specific, transcriptional regulator, Fis family  30.83 
 
 
463 aa  73.6  0.000000000003  Anaeromyxobacter sp. K  Bacteria  normal  0.0346405  n/a   
 
 
-
 
NC_010622  Bphy_0645  two component LuxR family transcriptional regulator  24.34 
 
 
240 aa  73.2  0.000000000004  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_011891  A2cp1_1708  two component, sigma54 specific, transcriptional regulator, Fis family  30.83 
 
 
463 aa  73.2  0.000000000004  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_007777  Francci3_1039  two component LuxR family transcriptional regulator  29.05 
 
 
238 aa  73.6  0.000000000004  Frankia sp. CcI3  Bacteria  normal  normal  0.135118 
 
 
-
 
NC_009783  VIBHAR_03091  hypothetical protein  36.21 
 
 
368 aa  73.2  0.000000000004  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_008340  Mlg_2153  response regulator receiver protein  33.62 
 
 
129 aa  73.2  0.000000000004  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.217001  normal  0.0793276 
 
 
-
 
NC_009091  P9301_01891  two-component response regulator  25.69 
 
 
242 aa  73.2  0.000000000004  Prochlorococcus marinus str. MIT 9301  Bacteria  normal  0.991625  n/a   
 
 
-
 
NC_009943  Dole_1357  response regulator receiver protein  34.21 
 
 
144 aa  72.8  0.000000000005  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.48275  n/a   
 
 
-
 
NC_011726  PCC8801_1812  two component transcriptional regulator, LuxR family  26.97 
 
 
231 aa  72.8  0.000000000005  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013161  Cyan8802_1838  two component transcriptional regulator, LuxR family  26.97 
 
 
231 aa  72.8  0.000000000005  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_0279  response regulator receiver protein  25.63 
 
 
216 aa  72.8  0.000000000005  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_008687  Pden_2964  two component, sigma54 specific, Fis family transcriptional regulator  32.23 
 
 
441 aa  72.8  0.000000000005  Paracoccus denitrificans PD1222  Bacteria  normal  0.0210387  normal  0.108805 
 
 
-
 
NC_011831  Cagg_2217  two component transcriptional regulator, winged helix family  37.06 
 
 
276 aa  72.8  0.000000000005  Chloroflexus aggregans DSM 9485  Bacteria  hitchhiker  0.00294817  normal 
 
 
-
 
NC_011729  PCC7424_0984  response regulator receiver modulated diguanylate cyclase  31.63 
 
 
353 aa  72.8  0.000000000006  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.194443 
 
 
-
 
NC_013730  Slin_1034  response regulator receiver protein  34.78 
 
 
125 aa  72.4  0.000000000006  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_013421  Pecwa_2280  response regulator of RpoS  27.56 
 
 
338 aa  72.8  0.000000000006  Pectobacterium wasabiae WPP163  Bacteria  normal  0.0715238  n/a   
 
 
-
 
NC_012918  GM21_0684  two component, sigma54 specific, transcriptional regulator, Fis family  34.35 
 
 
469 aa  72.8  0.000000000006  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.0000000000150794 
 
 
-
 
NC_008817  P9515_01981  two-component response regulator  26.94 
 
 
242 aa  72.8  0.000000000006  Prochlorococcus marinus str. MIT 9515  Bacteria  normal  0.125891  n/a   
 
 
-
 
NC_004578  PSPTO_2117  response regulator  31.72 
 
 
394 aa  72.4  0.000000000007  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.0129975  n/a   
 
 
-
 
NC_008816  A9601_01871  two-component response regulator  24.9 
 
 
242 aa  72.4  0.000000000007  Prochlorococcus marinus str. AS9601  Bacteria  normal  0.528311  n/a   
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>