Gene Nham_0872 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNham_0872 
Symbol 
ID4031421 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNitrobacter hamburgensis X14 
KingdomBacteria 
Replicon accessionNC_007964 
Strand+ 
Start bp965473 
End bp966105 
Gene Length633 bp 
Protein Length210 aa 
Translation table11 
GC content57% 
IMG OID637969387 
Producttwo component LuxR family transcriptional regulator 
Protein accessionYP_576197 
Protein GI92116468 
COG category[T] Signal transduction mechanisms 
COG ID[COG4566] Response regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGCCTGGCC TTGTTTATAT TGTGGACGAC GATGCTTCGT TTCTGACAGC GGTTGAACGC 
CGTCTGAAAC TTGCTGGCTA TGAAGTCGAA AAATACTCGT CGGCTCAAAC GCTGCTGGAT 
CGTCTTCAGG GCTCGGAAAG ACCGGGATGC GTCTTGCTCG ACGTACGGAT GCCTGGACTG 
AACGGGCTGG AATTGCAAAG CCGCCTCATC AAGCTCCATT CGATCTTGCC GGTCGTCTTC 
GTCACCGGCC ATGCTGACAT CCCAACGACC GTACGAGCCA TCAGAGCAGG CGCCGAAGAC 
CTCCTGATCA AACCGGTACC ATCCGAACAA CTGATCGGCG CGATTGAGCG CGCCCTGGCG 
CGCCATGAGT CAGTCCGCAG CCAACGGAGC AGGCTCGATA CGGTTCTCGC TCTTCTTGCA 
AAATTGACGC CCCGCGAGCG ACAGGTCTTC GATCTGATCG TGCGCGGGAG GATCAACAAG 
CAAGTTGCCA GAGAACTGGG AACGACCGAG CGCACCGTGA AGGCGCATCG TCATGAGGTG 
ATGGAGAAGA TGCGGGTGCA CTCGCTCGCG GAACTGGTTT CGATCGCGGA ACGGCTTGGC 
CTGATTGATC CCAACGAAAA TACCGGTAGC TAA
 
Protein sequence
MPGLVYIVDD DASFLTAVER RLKLAGYEVE KYSSAQTLLD RLQGSERPGC VLLDVRMPGL 
NGLELQSRLI KLHSILPVVF VTGHADIPTT VRAIRAGAED LLIKPVPSEQ LIGAIERALA 
RHESVRSQRS RLDTVLALLA KLTPRERQVF DLIVRGRINK QVARELGTTE RTVKAHRHEV 
MEKMRVHSLA ELVSIAERLG LIDPNENTGS