More than 300 homologs were found in PanDaTox collection
for query gene PSPTO_4836 on replicon NC_004578
Organism: Pseudomonas syringae pv. tomato str. DC3000



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_004578  PSPTO_4836  DNA binding response regulator, LuxR family  100 
 
 
260 aa  534  1e-151  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.765839  n/a   
 
 
-
 
NC_007005  Psyr_4376  LuxR response regulator receiver  86.04 
 
 
265 aa  456  1e-127  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.945677 
 
 
-
 
NC_007492  Pfl01_0640  two component LuxR family transcriptional regulator  66.53 
 
 
269 aa  318  6e-86  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_0619  two component LuxR family transcriptional regulator  62.9 
 
 
258 aa  310  2e-83  Pseudomonas putida GB-1  Bacteria  normal  normal  0.0738447 
 
 
-
 
NC_009512  Pput_0613  two component LuxR family transcriptional regulator  61.69 
 
 
258 aa  306  3e-82  Pseudomonas putida F1  Bacteria  normal  0.0682847  normal 
 
 
-
 
NC_002947  PP_0574  LuxR family DNA-binding response regulator  61.69 
 
 
258 aa  305  5.0000000000000004e-82  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_4590  two component LuxR family transcriptional regulator  62.9 
 
 
258 aa  304  1.0000000000000001e-81  Pseudomonas putida W619  Bacteria  normal  normal  0.038066 
 
 
-
 
NC_009656  PSPA7_4863  LuxR family DNA-binding response regulator  47.41 
 
 
272 aa  225  5.0000000000000005e-58  Pseudomonas aeruginosa PA7  Bacteria  normal  0.090532  n/a   
 
 
-
 
NC_008463  PA14_55810  putative two-component response regulator  46.85 
 
 
275 aa  221  9e-57  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_008340  Mlg_2151  two component LuxR family transcriptional regulator  39.42 
 
 
264 aa  157  2e-37  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal  0.104213 
 
 
-
 
NC_007413  Ava_3628  two component LuxR family transcriptional regulator  27.23 
 
 
225 aa  88.6  8e-17  Anabaena variabilis ATCC 29413  Bacteria  normal  0.717242  normal  0.142765 
 
 
-
 
NC_011729  PCC7424_2881  two component transcriptional regulator, LuxR family  27.78 
 
 
212 aa  87.8  2e-16  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_014248  Aazo_2887  LuxR family two component transcriptional regulator  26.81 
 
 
225 aa  87  3e-16  'Nostoc azollae' 0708  Bacteria  normal  0.526109  n/a   
 
 
-
 
NC_013595  Sros_1417  response regulator receiver protein  31.62 
 
 
234 aa  85.9  5e-16  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.0224272 
 
 
-
 
NC_007794  Saro_1236  two component LuxR family transcriptional regulator  31.09 
 
 
208 aa  85.9  6e-16  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.23752  n/a   
 
 
-
 
NC_014165  Tbis_0775  LuxR family two component transcriptional regulator  30.95 
 
 
234 aa  85.9  6e-16  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.336237 
 
 
-
 
NC_008340  Mlg_1669  two component LuxR family transcriptional regulator  28.57 
 
 
221 aa  84.3  0.000000000000002  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal 
 
 
-
 
NC_011726  PCC8801_1580  two component transcriptional regulator, LuxR family  27.78 
 
 
216 aa  83.6  0.000000000000003  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013161  Cyan8802_1605  two component transcriptional regulator, LuxR family  27.78 
 
 
216 aa  83.6  0.000000000000003  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_011831  Cagg_0340  two component transcriptional regulator, LuxR family  28.39 
 
 
217 aa  80.9  0.00000000000002  Chloroflexus aggregans DSM 9485  Bacteria  hitchhiker  0.00614189  hitchhiker  0.00317709 
 
 
-
 
NC_013757  Gobs_4064  two component transcriptional regulator, LuxR family  31.12 
 
 
217 aa  80.9  0.00000000000002  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_011884  Cyan7425_0981  two component transcriptional regulator, LuxR family  25.32 
 
 
221 aa  79.3  0.00000000000006  Cyanothece sp. PCC 7425  Bacteria  normal  normal  0.416641 
 
 
-
 
NC_011831  Cagg_2217  two component transcriptional regulator, winged helix family  34.48 
 
 
276 aa  79  0.00000000000008  Chloroflexus aggregans DSM 9485  Bacteria  hitchhiker  0.00294817  normal 
 
 
-
 
NC_014210  Ndas_4366  two component transcriptional regulator, LuxR family  30.8 
 
 
225 aa  78.2  0.0000000000001  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_013525  Tter_1109  two component transcriptional regulator, LuxR family  28.21 
 
 
218 aa  77  0.0000000000002  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_011901  Tgr7_2171  two component transcriptional regulator, LuxR family  27.23 
 
 
227 aa  77.4  0.0000000000002  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_013223  Dret_2369  multi-sensor hybrid histidine kinase  34.06 
 
 
1316 aa  77.4  0.0000000000002  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_008312  Tery_4323  two component LuxR family transcriptional regulator  25.75 
 
 
215 aa  77.4  0.0000000000002  Trichodesmium erythraeum IMS101  Bacteria  normal  0.115662  normal  0.727411 
 
 
-
 
NC_014165  Tbis_1846  LuxR family two component transcriptional regulator  27.82 
 
 
226 aa  77.4  0.0000000000002  Thermobispora bispora DSM 43833  Bacteria  normal  0.699471  normal 
 
 
-
 
NC_012034  Athe_2627  two component transcriptional regulator, LuxR family  27.62 
 
 
211 aa  77.4  0.0000000000002  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_5905  response regulator receiver protein  27.35 
 
 
227 aa  76.6  0.0000000000003  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0252894  normal  0.145246 
 
 
-
 
NC_011769  DvMF_1991  response regulator receiver protein  36.52 
 
 
153 aa  77  0.0000000000003  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_010571  Oter_3794  response regulator receiver sensor signal transduction histidine kinase  35.77 
 
 
376 aa  77  0.0000000000003  Opitutus terrae PB90-1  Bacteria  normal  0.0277983  normal  0.543799 
 
 
-
 
NC_011729  PCC7424_0031  two component transcriptional regulator, LuxR family  27.73 
 
 
229 aa  77  0.0000000000003  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_013530  Xcel_1633  two component transcriptional regulator, LuxR family  30.92 
 
 
241 aa  77  0.0000000000003  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.457155  n/a   
 
 
-
 
NC_012669  Bcav_1240  two component transcriptional regulator, winged helix family  34.07 
 
 
227 aa  76.6  0.0000000000004  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.729355  normal 
 
 
-
 
NC_009524  PsycPRwf_0663  two component LuxR family transcriptional regulator  27 
 
 
219 aa  76.6  0.0000000000004  Psychrobacter sp. PRwf-1  Bacteria  normal  normal 
 
 
-
 
NC_009976  P9211_01871  two-component response regulator  26.36 
 
 
242 aa  76.6  0.0000000000004  Prochlorococcus marinus str. MIT 9211  Bacteria  normal  normal 
 
 
-
 
NC_013946  Mrub_0806  two component LuxR family transcriptional regulator  28.03 
 
 
216 aa  75.9  0.0000000000006  Meiothermus ruber DSM 1279  Bacteria  normal  normal 
 
 
-
 
NC_010803  Clim_1287  two component, sigma54 specific, transcriptional regulator, Fis family  32.95 
 
 
452 aa  75.9  0.0000000000006  Chlorobium limicola DSM 245  Bacteria  normal  0.541874  n/a   
 
 
-
 
NC_009656  PSPA7_1229  transcriptional regulator NarL  26.88 
 
 
219 aa  75.5  0.0000000000008  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_007335  PMN2A_1537  two component LuxR family transcriptional regulator  26.05 
 
 
242 aa  75.5  0.0000000000009  Prochlorococcus marinus str. NATL2A  Bacteria  normal  n/a   
 
 
-
 
NC_010571  Oter_0804  two component LuxR family transcriptional regulator  27.66 
 
 
204 aa  75.1  0.0000000000009  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
NC_007604  Synpcc7942_1860  two component LuxR family transcriptional regulator  27.5 
 
 
235 aa  75.1  0.000000000001  Synechococcus elongatus PCC 7942  Bacteria  normal  normal 
 
 
-
 
NC_011145  AnaeK_1635  two component, sigma54 specific, transcriptional regulator, Fis family  30 
 
 
463 aa  74.7  0.000000000001  Anaeromyxobacter sp. K  Bacteria  normal  0.0346405  n/a   
 
 
-
 
NC_012560  Avin_32720  Response regulator  28.9 
 
 
394 aa  74.7  0.000000000001  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_008340  Mlg_2153  response regulator receiver protein  33.05 
 
 
129 aa  74.7  0.000000000001  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.217001  normal  0.0793276 
 
 
-
 
NC_008463  PA14_13730  transcriptional regulator NarL  26.88 
 
 
219 aa  74.7  0.000000000001  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.817999 
 
 
-
 
NC_009664  Krad_3810  two component transcriptional regulator, LuxR family  27.76 
 
 
236 aa  75.1  0.000000000001  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.225059  normal  0.0261757 
 
 
-
 
NC_010625  Bphy_5955  two component LuxR family transcriptional regulator  32.28 
 
 
215 aa  74.7  0.000000000001  Burkholderia phymatum STM815  Bacteria  normal  normal  0.132796 
 
 
-
 
NC_011658  BCAH187_A0780  DNA-binding response regulator  31.58 
 
 
225 aa  74.3  0.000000000002  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_007513  Syncc9902_2107  two component LuxR family transcriptional regulator  27.02 
 
 
245 aa  73.9  0.000000000002  Synechococcus sp. CC9902  Bacteria  normal  n/a   
 
 
-
 
NC_007516  Syncc9605_2427  two component LuxR family transcriptional regulator  27.02 
 
 
245 aa  73.9  0.000000000002  Synechococcus sp. CC9605  Bacteria  normal  0.27075  normal 
 
 
-
 
NC_011891  A2cp1_1708  two component, sigma54 specific, transcriptional regulator, Fis family  30 
 
 
463 aa  73.9  0.000000000002  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_2239  two component, sigma54 specific, Fis family transcriptional regulator  30 
 
 
466 aa  74.3  0.000000000002  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_009719  Plav_2358  response regulator receiver protein  26.79 
 
 
233 aa  74.3  0.000000000002  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.119902  normal  0.5156 
 
 
-
 
NC_010515  Bcenmc03_4219  two component LuxR family transcriptional regulator  27.8 
 
 
212 aa  74.3  0.000000000002  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.186755  normal  0.698621 
 
 
-
 
NC_009943  Dole_1357  response regulator receiver protein  33.08 
 
 
144 aa  74.7  0.000000000002  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.48275  n/a   
 
 
-
 
NC_014210  Ndas_1125  two component transcriptional regulator, LuxR family  29.44 
 
 
229 aa  74.3  0.000000000002  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.306134 
 
 
-
 
NC_008819  NATL1_02441  two-component response regulator  26.05 
 
 
242 aa  73.9  0.000000000002  Prochlorococcus marinus str. NATL1A  Bacteria  normal  0.72299  normal 
 
 
-
 
NC_009512  Pput_2871  response regulator receiver protein  24.77 
 
 
206 aa  74.3  0.000000000002  Pseudomonas putida F1  Bacteria  normal  0.313361  normal  0.346414 
 
 
-
 
NC_007298  Daro_3108  LuxR response regulator receiver  26.2 
 
 
202 aa  73.6  0.000000000003  Dechloromonas aromatica RCB  Bacteria  normal  0.786061  normal 
 
 
-
 
NC_009783  VIBHAR_03091  hypothetical protein  30.36 
 
 
368 aa  73.6  0.000000000003  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009675  Anae109_1017  two component, sigma54 specific, Fis family transcriptional regulator  30.77 
 
 
460 aa  73.6  0.000000000003  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal  0.0996419 
 
 
-
 
NC_013131  Caci_8900  two component transcriptional regulator, LuxR family  29.72 
 
 
221 aa  73.6  0.000000000003  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.967084  normal 
 
 
-
 
NC_014210  Ndas_2024  two component transcriptional regulator, LuxR family  29.11 
 
 
220 aa  73.2  0.000000000004  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.876474  normal 
 
 
-
 
NC_013172  Bfae_20650  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  33.33 
 
 
231 aa  73.2  0.000000000004  Brachybacterium faecium DSM 4810  Bacteria  normal  0.0260682  n/a   
 
 
-
 
NC_009767  Rcas_1142  two component LuxR family transcriptional regulator  28.4 
 
 
222 aa  73.2  0.000000000004  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.661777  normal 
 
 
-
 
NC_010184  BcerKBAB4_5205  two component LuxR family transcriptional regulator  29.96 
 
 
215 aa  73.2  0.000000000004  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_012793  GWCH70_0170  two component transcriptional regulator, winged helix family  32.84 
 
 
232 aa  72.8  0.000000000005  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_008700  Sama_2399  response regulator receiver protein  26.16 
 
 
201 aa  72.8  0.000000000005  Shewanella amazonensis SB2B  Bacteria  normal  normal  0.635003 
 
 
-
 
NC_008048  Sala_0758  two component transcriptional regulator  31.65 
 
 
244 aa  72.4  0.000000000006  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.885545  normal 
 
 
-
 
NC_013223  Dret_0868  multi-sensor signal transduction histidine kinase  39.29 
 
 
650 aa  72.4  0.000000000006  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_010622  Bphy_0645  two component LuxR family transcriptional regulator  23.35 
 
 
240 aa  72.4  0.000000000006  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_009091  P9301_01891  two-component response regulator  27.76 
 
 
242 aa  72.4  0.000000000006  Prochlorococcus marinus str. MIT 9301  Bacteria  normal  0.991625  n/a   
 
 
-
 
NC_005707  BCE_A0213  DNA-binding response regulator  32.19 
 
 
227 aa  72.4  0.000000000007  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_011777  BCAH820_B0254  DNA-binding response regulator  32.19 
 
 
227 aa  72.4  0.000000000007  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.0000000000466037 
 
 
-
 
NC_013093  Amir_7055  two component transcriptional regulator, LuxR family  27.04 
 
 
219 aa  72.4  0.000000000007  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013161  Cyan8802_1838  two component transcriptional regulator, LuxR family  26.18 
 
 
231 aa  72  0.000000000008  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_011726  PCC8801_1812  two component transcriptional regulator, LuxR family  26.18 
 
 
231 aa  72  0.000000000008  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_014248  Aazo_0819  LuxR family two component transcriptional regulator  26.07 
 
 
227 aa  72  0.000000000008  'Nostoc azollae' 0708  Bacteria  normal  0.633548  n/a   
 
 
-
 
NC_009720  Xaut_1115  response regulator receiver protein  34.51 
 
 
127 aa  72  0.000000000009  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_2302  two component transcriptional regulator, LuxR family  27.13 
 
 
226 aa  71.2  0.00000000001  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0191252  n/a   
 
 
-
 
NC_005957  BT9727_0563  response regulator  30.26 
 
 
225 aa  71.2  0.00000000001  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK0562  response regulator  30.26 
 
 
225 aa  71.6  0.00000000001  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_3782  two component transcriptional regulator, LuxR family  27 
 
 
223 aa  72  0.00000000001  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_009664  Krad_2537  two component transcriptional regulator, LuxR family  27.24 
 
 
242 aa  71.6  0.00000000001  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_007925  RPC_3796  two component LuxR family transcriptional regulator  24.58 
 
 
209 aa  72  0.00000000001  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_007964  Nham_0872  two component LuxR family transcriptional regulator  25.75 
 
 
210 aa  72  0.00000000001  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_008345  Sfri_0620  two component transcriptional regulator, LuxR family protein  28.15 
 
 
209 aa  71.6  0.00000000001  Shewanella frigidimarina NCIMB 400  Bacteria  unclonable  0.000000000275655  n/a   
 
 
-
 
NC_009485  BBta_0652  two component LuxR family transcriptional regulator  24.57 
 
 
305 aa  72  0.00000000001  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.0800453  normal  0.813173 
 
 
-
 
NC_011772  BCG9842_B4651  DNA-binding response regulator  32.19 
 
 
225 aa  71.6  0.00000000001  Bacillus cereus G9842  Bacteria  hitchhiker  0.00217543  unclonable  3.82242e-26 
 
 
-
 
NC_010506  Swoo_0970  two component LuxR family transcriptional regulator  27.62 
 
 
209 aa  71.6  0.00000000001  Shewanella woodyi ATCC 51908  Bacteria  normal  0.0307407  normal 
 
 
-
 
NC_009972  Haur_0719  multi-sensor signal transduction histidine kinase  32.18 
 
 
531 aa  72  0.00000000001  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_011891  A2cp1_0533  two component, sigma54 specific, transcriptional regulator, Fis family  33.33 
 
 
443 aa  71.2  0.00000000002  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.141325  n/a   
 
 
-
 
NC_005945  BAS0618  DNA-binding response regulator  32.06 
 
 
225 aa  70.9  0.00000000002  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_0812  two component, sigma54 specific, Fis family transcriptional regulator  32.64 
 
 
453 aa  71.2  0.00000000002  Geobacter metallireducens GS-15  Bacteria  normal  0.0257022  hitchhiker  0.00000328811 
 
 
-
 
NC_013456  VEA_002881  response regulator  29.24 
 
 
368 aa  70.9  0.00000000002  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_009972  Haur_4039  two component LuxR family transcriptional regulator  27.08 
 
 
250 aa  70.9  0.00000000002  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.512873  n/a   
 
 
-
 
NC_009621  Smed_6273  response regulator FixJ  24.51 
 
 
204 aa  71.2  0.00000000002  Sinorhizobium medicae WSM419  Bacteria  normal  0.664827  normal  0.544702 
 
 
-
 
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