More than 300 homologs were found in PanDaTox collection
for query gene PA14_55810 on replicon NC_008463
Organism: Pseudomonas aeruginosa UCBPP-PA14



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008463  PA14_55810  putative two-component response regulator  100 
 
 
275 aa  562  1.0000000000000001e-159  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_4863  LuxR family DNA-binding response regulator  94.55 
 
 
272 aa  526  1e-148  Pseudomonas aeruginosa PA7  Bacteria  normal  0.090532  n/a   
 
 
-
 
NC_007492  Pfl01_0640  two component LuxR family transcriptional regulator  50.59 
 
 
269 aa  250  2e-65  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_0613  two component LuxR family transcriptional regulator  51.37 
 
 
258 aa  248  9e-65  Pseudomonas putida F1  Bacteria  normal  0.0682847  normal 
 
 
-
 
NC_002947  PP_0574  LuxR family DNA-binding response regulator  51.37 
 
 
258 aa  248  1e-64  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_0619  two component LuxR family transcriptional regulator  49.81 
 
 
258 aa  243  1.9999999999999999e-63  Pseudomonas putida GB-1  Bacteria  normal  normal  0.0738447 
 
 
-
 
NC_010501  PputW619_4590  two component LuxR family transcriptional regulator  50.38 
 
 
258 aa  241  1e-62  Pseudomonas putida W619  Bacteria  normal  normal  0.038066 
 
 
-
 
NC_007005  Psyr_4376  LuxR response regulator receiver  47.64 
 
 
265 aa  232  5e-60  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.945677 
 
 
-
 
NC_004578  PSPTO_4836  DNA binding response regulator, LuxR family  46.85 
 
 
260 aa  221  9e-57  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.765839  n/a   
 
 
-
 
NC_008340  Mlg_2151  two component LuxR family transcriptional regulator  34.92 
 
 
264 aa  138  1e-31  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal  0.104213 
 
 
-
 
NC_007604  Synpcc7942_1860  two component LuxR family transcriptional regulator  26.4 
 
 
235 aa  81.6  0.00000000000001  Synechococcus elongatus PCC 7942  Bacteria  normal  normal 
 
 
-
 
NC_011729  PCC7424_2881  two component transcriptional regulator, LuxR family  24.19 
 
 
212 aa  79.3  0.00000000000006  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_011729  PCC7424_2955  two component transcriptional regulator, LuxR family  27.45 
 
 
231 aa  75.5  0.0000000000009  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.800941 
 
 
-
 
NC_007413  Ava_3628  two component LuxR family transcriptional regulator  22.9 
 
 
225 aa  73.9  0.000000000003  Anabaena variabilis ATCC 29413  Bacteria  normal  0.717242  normal  0.142765 
 
 
-
 
NC_014210  Ndas_4366  two component transcriptional regulator, LuxR family  28.74 
 
 
225 aa  73.9  0.000000000003  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_011884  Cyan7425_5215  two component transcriptional regulator, LuxR family  24.42 
 
 
217 aa  73.9  0.000000000003  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_011831  Cagg_0340  two component transcriptional regulator, LuxR family  25.97 
 
 
217 aa  73.6  0.000000000004  Chloroflexus aggregans DSM 9485  Bacteria  hitchhiker  0.00614189  hitchhiker  0.00317709 
 
 
-
 
NC_009512  Pput_4322  two component, sigma54 specific, Fis family transcriptional regulator  33.97 
 
 
444 aa  72.8  0.000000000005  Pseudomonas putida F1  Bacteria  normal  0.713581  normal 
 
 
-
 
NC_014248  Aazo_2987  LuxR family two component transcriptional regulator  26.8 
 
 
231 aa  72.4  0.000000000007  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_2359  putative two-component response regulator  35.11 
 
 
394 aa  72.4  0.000000000007  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_008541  Arth_2136  two component LuxR family transcriptional regulator  27.34 
 
 
254 aa  72  0.000000000009  Arthrobacter sp. FB24  Bacteria  normal  0.0553154  n/a   
 
 
-
 
NC_008340  Mlg_2153  response regulator receiver protein  31.09 
 
 
129 aa  72  0.000000000009  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.217001  normal  0.0793276 
 
 
-
 
NC_008541  Arth_4134  two component LuxR family transcriptional regulator  26.56 
 
 
250 aa  71.6  0.00000000001  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_0301  two component LuxR family transcriptional regulator  27.2 
 
 
231 aa  71.6  0.00000000001  Anabaena variabilis ATCC 29413  Bacteria  normal  0.54347  normal 
 
 
-
 
NC_013530  Xcel_1633  two component transcriptional regulator, LuxR family  26.25 
 
 
241 aa  71.6  0.00000000001  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.457155  n/a   
 
 
-
 
NC_010571  Oter_0804  two component LuxR family transcriptional regulator  28.12 
 
 
204 aa  70.9  0.00000000002  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
NC_009719  Plav_2050  two component, sigma54 specific, Fis family transcriptional regulator  32.88 
 
 
511 aa  70.9  0.00000000002  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.155124  hitchhiker  0.000156568 
 
 
-
 
NC_014165  Tbis_0228  LuxR family two component transcriptional regulator  27.38 
 
 
206 aa  71.2  0.00000000002  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_008740  Maqu_3089  two component LuxR family transcriptional regulator  22.43 
 
 
219 aa  70.1  0.00000000004  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_008340  Mlg_1669  two component LuxR family transcriptional regulator  24.6 
 
 
221 aa  70.1  0.00000000004  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal 
 
 
-
 
NC_007484  Noc_3019  two component, sigma-54 specific, Fis family transcriptional regulator  30.17 
 
 
455 aa  69.7  0.00000000005  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_5184  response regulator receiver domain-containing protein  35.2 
 
 
148 aa  69.7  0.00000000005  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.0546005  normal  0.118263 
 
 
-
 
NC_008347  Mmar10_2539  two component, sigma54 specific, Fis family transcriptional regulator  34.23 
 
 
487 aa  69.3  0.00000000007  Maricaulis maris MCS10  Bacteria  normal  0.846517  normal 
 
 
-
 
NC_011894  Mnod_2330  two component, sigma54 specific, transcriptional regulator, Fis family  33.61 
 
 
466 aa  68.2  0.0000000001  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_011899  Hore_21820  two component transcriptional regulator, LuxR family  28.04 
 
 
211 aa  68.2  0.0000000001  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_009719  Plav_2358  response regulator receiver protein  29.34 
 
 
233 aa  68.6  0.0000000001  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.119902  normal  0.5156 
 
 
-
 
NC_007760  Adeh_0626  two component, sigma54 specific, Fis family transcriptional regulator  37.5 
 
 
460 aa  68.2  0.0000000001  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_008312  Tery_4323  two component LuxR family transcriptional regulator  24.1 
 
 
215 aa  68.2  0.0000000001  Trichodesmium erythraeum IMS101  Bacteria  normal  0.115662  normal  0.727411 
 
 
-
 
NC_013161  Cyan8802_1838  two component transcriptional regulator, LuxR family  25.79 
 
 
231 aa  67.8  0.0000000002  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_009972  Haur_0447  two component transcriptional regulator  34.23 
 
 
229 aa  68.2  0.0000000002  Herpetosiphon aurantiacus ATCC 23779  Bacteria  hitchhiker  0.000245325  n/a   
 
 
-
 
NC_010581  Bind_1884  response regulator receiver sensor signal transduction histidine kinase  34.62 
 
 
389 aa  67.8  0.0000000002  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.329348  normal 
 
 
-
 
NC_014210  Ndas_1125  two component transcriptional regulator, LuxR family  27.24 
 
 
229 aa  67.4  0.0000000002  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.306134 
 
 
-
 
NC_011726  PCC8801_1812  two component transcriptional regulator, LuxR family  25.79 
 
 
231 aa  67.8  0.0000000002  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013223  Dret_2242  two component, sigma54 specific, transcriptional regulator, Fis family  35.9 
 
 
464 aa  67.8  0.0000000002  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal  0.719582 
 
 
-
 
NC_011891  A2cp1_0883  two component, sigma54 specific, transcriptional regulator, Fis family  31.16 
 
 
466 aa  67.8  0.0000000002  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.879866  n/a   
 
 
-
 
NC_002947  PP_1401  two component, sigma54 specific, transcriptional regulator, Fis family  34.81 
 
 
444 aa  67  0.0000000003  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_012560  Avin_18020  sigma54-dependent response regulator of C4 dicarboxylate transport, two component; DctD  30.49 
 
 
446 aa  67  0.0000000003  Azotobacter vinelandii DJ  Bacteria  normal  0.266513  n/a   
 
 
-
 
NC_010814  Glov_1694  two component, sigma54 specific, transcriptional regulator, Fis family  29.73 
 
 
472 aa  67  0.0000000003  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_2668  response regulator receiver protein  32.76 
 
 
675 aa  67  0.0000000003  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_008825  Mpe_A3216  type IV pilus expression regulatory protein  36.61 
 
 
537 aa  67  0.0000000003  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.422678 
 
 
-
 
NC_008340  Mlg_2623  two component, sigma54 specific, Fis family transcriptional regulator  31.03 
 
 
456 aa  67  0.0000000003  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_3849  response regulator receiver (CheY) modulated Serine phosphatase  33.12 
 
 
412 aa  66.6  0.0000000004  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.658628 
 
 
-
 
NC_009656  PSPA7_6313  putative two-component response regulator  30.43 
 
 
447 aa  66.6  0.0000000004  Pseudomonas aeruginosa PA7  Bacteria  normal  0.86051  n/a   
 
 
-
 
NC_011145  AnaeK_0879  two component, sigma54 specific, transcriptional regulator, Fis family  30.43 
 
 
466 aa  66.6  0.0000000004  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_27940  putative two-component response regulator  32.82 
 
 
394 aa  66.6  0.0000000004  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_008463  PA14_72720  putative two-component response regulator  29.81 
 
 
447 aa  66.2  0.0000000005  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.269979  normal 
 
 
-
 
NC_009943  Dole_2739  two component, sigma54 specific, Fis family transcriptional regulator  31.54 
 
 
451 aa  66.2  0.0000000005  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.693002  n/a   
 
 
-
 
NC_002939  GSU0598  sigma-54 dependent DNA-binding response regulator  33.87 
 
 
470 aa  66.2  0.0000000006  Geobacter sulfurreducens PCA  Bacteria  normal  0.885444  n/a   
 
 
-
 
NC_009483  Gura_0009  multi-sensor signal transduction histidine kinase  26.49 
 
 
508 aa  66.2  0.0000000006  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_007404  Tbd_0019  two component Fis family transcriptional regulator  24.76 
 
 
424 aa  66.2  0.0000000006  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  normal  0.217538 
 
 
-
 
NC_008463  PA14_72380  two-component response regulator AlgB  30.53 
 
 
449 aa  65.9  0.0000000006  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.415261  normal 
 
 
-
 
NC_009656  PSPA7_6282  two-component response regulator AlgB  30.53 
 
 
449 aa  66.2  0.0000000006  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_002967  TDE1969  sigma-54 dependent transcriptional regulator/response regulator  34.96 
 
 
473 aa  65.9  0.0000000007  Treponema denticola ATCC 35405  Bacteria  normal  0.440374  n/a   
 
 
-
 
NC_009091  P9301_01891  two-component response regulator  24.11 
 
 
242 aa  65.9  0.0000000007  Prochlorococcus marinus str. MIT 9301  Bacteria  normal  0.991625  n/a   
 
 
-
 
NC_009972  Haur_3458  multi-sensor signal transduction histidine kinase  28.57 
 
 
958 aa  65.9  0.0000000007  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_009621  Smed_5633  response regulator receiver protein  24.68 
 
 
218 aa  65.9  0.0000000007  Sinorhizobium medicae WSM419  Bacteria  normal  0.938686  normal  0.508699 
 
 
-
 
NC_013216  Dtox_0789  two component, sigma54 specific, transcriptional regulator, Fis family  36.94 
 
 
448 aa  65.5  0.0000000008  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_011901  Tgr7_2171  two component transcriptional regulator, LuxR family  25.1 
 
 
227 aa  65.5  0.0000000009  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_009784  VIBHAR_07090  nitrogen regulation protein NtrX  26.83 
 
 
407 aa  65.1  0.000000001  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_007516  Syncc9605_2427  two component LuxR family transcriptional regulator  25.68 
 
 
245 aa  65.1  0.000000001  Synechococcus sp. CC9605  Bacteria  normal  0.27075  normal 
 
 
-
 
NC_008816  A9601_01871  two-component response regulator  23.35 
 
 
242 aa  65.1  0.000000001  Prochlorococcus marinus str. AS9601  Bacteria  normal  0.528311  n/a   
 
 
-
 
NC_013385  Adeg_0173  two component, sigma54 specific, transcriptional regulator, Fis family  36.61 
 
 
463 aa  65.1  0.000000001  Ammonifex degensii KC4  Bacteria  normal  0.127235  n/a   
 
 
-
 
NC_007614  Nmul_A1861  putative PAS/PAC sensor protein  26.85 
 
 
280 aa  65.1  0.000000001  Nitrosospira multiformis ATCC 25196  Bacteria  normal  0.372386  n/a   
 
 
-
 
NC_007643  Rru_A1500  Signal transduction histidine kinase (STHK) with CheB and CheR activity  21.4 
 
 
1483 aa  65.5  0.000000001  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_007947  Mfla_0181  two component, sigma54 specific, Fis family transcriptional regulator  30.72 
 
 
423 aa  65.1  0.000000001  Methylobacillus flagellatus KT  Bacteria  normal  decreased coverage  0.000041492 
 
 
-
 
NC_008228  Patl_1981  two component LuxR family transcriptional regulator  25.48 
 
 
213 aa  65.1  0.000000001  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.607794  n/a   
 
 
-
 
NC_011146  Gbem_3286  two component, sigma54 specific, transcriptional regulator, Fis family  30.22 
 
 
458 aa  64.7  0.000000001  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_0962  two component, sigma54 specific, transcriptional regulator, Fis family  30.22 
 
 
458 aa  65.1  0.000000001  Geobacter sp. M21  Bacteria  n/a    normal  0.277353 
 
 
-
 
NC_009439  Pmen_0176  two-component response regulator AlgB  32.23 
 
 
450 aa  64.3  0.000000002  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_002977  MCA2848  nitrogen regulation protein NtrX, putative  30.1 
 
 
455 aa  64.7  0.000000002  Methylococcus capsulatus str. Bath  Bacteria  normal  0.754871  n/a   
 
 
-
 
NC_008687  Pden_2964  two component, sigma54 specific, Fis family transcriptional regulator  32.17 
 
 
441 aa  64.3  0.000000002  Paracoccus denitrificans PD1222  Bacteria  normal  0.0210387  normal  0.108805 
 
 
-
 
NC_009720  Xaut_1115  response regulator receiver protein  30.25 
 
 
127 aa  64.7  0.000000002  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_005945  BAS5263  DNA-binding response regulator  26.95 
 
 
215 aa  64.7  0.000000002  Bacillus anthracis str. Sterne  Bacteria  normal  0.24037  n/a   
 
 
-
 
NC_005957  BT9727_5091  response regulator  26.95 
 
 
215 aa  64.7  0.000000002  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK5108  response regulator  26.95 
 
 
215 aa  64.7  0.000000002  Bacillus cereus E33L  Bacteria  decreased coverage  0.00235048  n/a   
 
 
-
 
NC_011884  Cyan7425_0981  two component transcriptional regulator, LuxR family  24.42 
 
 
221 aa  64.7  0.000000002  Cyanothece sp. PCC 7425  Bacteria  normal  normal  0.416641 
 
 
-
 
NC_007492  Pfl01_4458  two component, sigma-54 specific, Fis family transcriptional regulator  32.9 
 
 
442 aa  64.7  0.000000002  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.741172  normal 
 
 
-
 
NC_007530  GBAA_5661  DNA-binding response regulator  26.95 
 
 
215 aa  64.7  0.000000002  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_007577  PMT9312_0171  two component LuxR family transcriptional regulator  23.14 
 
 
242 aa  64.3  0.000000002  Prochlorococcus marinus str. MIT 9312  Bacteria  normal  n/a   
 
 
-
 
NC_007614  Nmul_A0389  two component, sigma54 specific, Fis family transcriptional regulator  32.37 
 
 
432 aa  64.7  0.000000002  Nitrosospira multiformis ATCC 25196  Bacteria  normal  n/a   
 
 
-
 
NC_013223  Dret_0887  response regulator receiver modulated metal dependent phosphohydrolase  29.32 
 
 
496 aa  63.9  0.000000002  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.384329  normal 
 
 
-
 
NC_009483  Gura_3647  two component, sigma-54 specific, Fis family transcriptional regulator  26.38 
 
 
471 aa  64.7  0.000000002  Geobacter uraniireducens Rf4  Bacteria  normal  0.0209004  n/a   
 
 
-
 
NC_014148  Plim_1915  sigma-54 factor interaction domain-containing protein  29.17 
 
 
467 aa  64.7  0.000000002  Planctomyces limnophilus DSM 3776  Bacteria  normal  0.0712701  n/a   
 
 
-
 
NC_014210  Ndas_3120  two component transcriptional regulator, LuxR family  25.49 
 
 
218 aa  64.3  0.000000002  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.954631  normal 
 
 
-
 
NC_010501  PputW619_1042  two component, sigma54 specific, Fis family transcriptional regulator  32.9 
 
 
444 aa  63.9  0.000000002  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_009253  Dred_1510  two component, sigma54 specific, Fis family transcriptional regulator  29.33 
 
 
448 aa  64.7  0.000000002  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_008321  Shewmr4_2685  two component, sigma54 specific, Fis family transcriptional regulator  31.4 
 
 
425 aa  64.3  0.000000002  Shewanella sp. MR-4  Bacteria  normal  0.501083  normal  0.0990314 
 
 
-
 
NC_009523  RoseRS_2305  two component transcriptional regulator  27.03 
 
 
263 aa  64.7  0.000000002  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_2753  two component, sigma54 specific, Fis family transcriptional regulator  31.4 
 
 
425 aa  64.3  0.000000002  Shewanella sp. MR-7  Bacteria  decreased coverage  0.00792223  normal 
 
 
-
 
NC_008345  Sfri_0620  two component transcriptional regulator, LuxR family protein  24.81 
 
 
209 aa  64.7  0.000000002  Shewanella frigidimarina NCIMB 400  Bacteria  unclonable  0.000000000275655  n/a   
 
 
-
 
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