More than 300 homologs were found in PanDaTox collection
for query gene Nmul_A1861 on replicon NC_007614
Organism: Nitrosospira multiformis ATCC 25196



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007614  Nmul_A1861  putative PAS/PAC sensor protein  100 
 
 
280 aa  579  1e-164  Nitrosospira multiformis ATCC 25196  Bacteria  normal  0.372386  n/a   
 
 
-
 
NC_007908  Rfer_3546  putative PAS/PAC sensor protein  71.43 
 
 
282 aa  416  9.999999999999999e-116  Rhodoferax ferrireducens T118  Bacteria  normal  0.536601  n/a   
 
 
-
 
NC_007954  Sden_1917  response regulator receiver  54.92 
 
 
303 aa  324  1e-87  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_007948  Bpro_2389  response regulator receiver domain-containing protein  66.89 
 
 
159 aa  212  4.9999999999999996e-54  Polaromonas sp. JS666  Bacteria  normal  0.589748  normal 
 
 
-
 
NC_007908  Rfer_3547  diguanylate cyclase  55.56 
 
 
314 aa  206  3e-52  Rhodoferax ferrireducens T118  Bacteria  normal  0.928319  n/a   
 
 
-
 
NC_007336  Reut_C6414  adenylate cyclase  55.78 
 
 
395 aa  201  9.999999999999999e-51  Ralstonia eutropha JMP134  Bacteria  normal  0.0293466  n/a   
 
 
-
 
NC_008345  Sfri_1020  two component, sigma54 specific, transcriptional regulator, Fis family protein  67.1 
 
 
516 aa  192  6e-48  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_007614  Nmul_A1860  diguanylate cyclase  65.73 
 
 
312 aa  191  8e-48  Nitrosospira multiformis ATCC 25196  Bacteria  normal  n/a   
 
 
-
 
NC_007614  Nmul_A1138  response regulator receiver /GGDEF/PAS/PAC domain-containing protein  41.32 
 
 
756 aa  189  5.999999999999999e-47  Nitrosospira multiformis ATCC 25196  Bacteria  normal  0.0305477  n/a   
 
 
-
 
NC_007511  Bcep18194_B2092  adenylate/guanylate cyclase  60.93 
 
 
395 aa  188  1e-46  Burkholderia sp. 383  Bacteria  normal  0.498255  normal  0.305178 
 
 
-
 
NC_013216  Dtox_4196  response regulator receiver modulated metal dependent phosphohydrolase  48.09 
 
 
350 aa  149  5e-35  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_010681  Bphyt_0187  response regulator receiver modulated metal dependent phosphohydrolase  43.83 
 
 
354 aa  134  1.9999999999999998e-30  Burkholderia phytofirmans PsJN  Bacteria  normal  normal  0.0125166 
 
 
-
 
NC_008578  Acel_2099  response regulator receiver modulated diguanylate phosphodiesterase  33.72 
 
 
402 aa  127  2.0000000000000002e-28  Acidothermus cellulolyticus 11B  Bacteria  normal  normal  0.316821 
 
 
-
 
NC_009439  Pmen_4185  response regulator receiver protein  48.44 
 
 
159 aa  125  7e-28  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_007298  Daro_3285  response regulator receiver  42.68 
 
 
362 aa  121  9.999999999999999e-27  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_013422  Hneap_2065  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  42.5 
 
 
615 aa  118  9.999999999999999e-26  Halothiobacillus neapolitanus c2  Bacteria  normal  0.722895  n/a   
 
 
-
 
NC_013946  Mrub_2733  response regulator receiver modulated metal dependent phosphohydrolase  40.94 
 
 
346 aa  117  1.9999999999999998e-25  Meiothermus ruber DSM 1279  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_2128  response regulator  46.88 
 
 
154 aa  116  3.9999999999999997e-25  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_1938  response regulator receiver  46.15 
 
 
154 aa  116  5e-25  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.0328542  normal  0.732853 
 
 
-
 
NC_010717  PXO_04606  two-component system regulatory protein  45.26 
 
 
157 aa  114  2.0000000000000002e-24  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_013889  TK90_0533  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  38.51 
 
 
597 aa  111  1.0000000000000001e-23  Thioalkalivibrio sp. K90mix  Bacteria  normal  0.985347  normal 
 
 
-
 
NC_011988  Avi_5382  two-component system regulatory protein  46.15 
 
 
158 aa  108  1e-22  Agrobacterium vitis S4  Bacteria  normal  0.365131  n/a   
 
 
-
 
NC_011662  Tmz1t_1846  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  43.29 
 
 
588 aa  106  4e-22  Thauera sp. MZ1T  Bacteria  normal  0.157265  n/a   
 
 
-
 
NC_008786  Veis_1344  diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  41.6 
 
 
836 aa  105  6e-22  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.492796  normal  0.0418259 
 
 
-
 
NC_013161  Cyan8802_0849  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  37.25 
 
 
593 aa  105  1e-21  Cyanothece sp. PCC 8802  Bacteria  normal  0.386146  normal 
 
 
-
 
NC_007908  Rfer_2262  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  27.7 
 
 
853 aa  105  1e-21  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_008752  Aave_1153  diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  45.08 
 
 
850 aa  104  1e-21  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_011726  PCC8801_0820  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  37.25 
 
 
593 aa  105  1e-21  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_011726  PCC8801_2052  response regulator receiver modulated diguanylate cyclase  29.07 
 
 
481 aa  103  3e-21  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013161  Cyan8802_2076  response regulator receiver modulated diguanylate cyclase  29.07 
 
 
481 aa  103  4e-21  Cyanothece sp. PCC 8802  Bacteria  hitchhiker  0.00773841  normal 
 
 
-
 
NC_010524  Lcho_3702  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  26.74 
 
 
863 aa  102  5e-21  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.170309 
 
 
-
 
NC_007517  Gmet_2999  response regulator receiver (CheY-like) modulated metal dependent phosphohydrolase  38.51 
 
 
361 aa  102  6e-21  Geobacter metallireducens GS-15  Bacteria  normal  normal  0.669597 
 
 
-
 
NC_012850  Rleg_1382  response regulator PleD  39.23 
 
 
457 aa  102  7e-21  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.390598 
 
 
-
 
NC_011369  Rleg2_1290  response regulator PleD  39.23 
 
 
457 aa  101  1e-20  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.0138689  hitchhiker  0.00259394 
 
 
-
 
NC_007908  Rfer_2893  diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  37.06 
 
 
1114 aa  101  2e-20  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_2017  response regulator receiver modulated metal dependent phosphohydrolase  38.51 
 
 
379 aa  99.8  5e-20  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.98115  n/a   
 
 
-
 
NC_009636  Smed_0926  response regulator PleD  38.46 
 
 
455 aa  99.4  5e-20  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.773886 
 
 
-
 
NC_011757  Mchl_0931  response regulator receiver modulated diguanylate cyclase  39.23 
 
 
457 aa  99  7e-20  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.436852  normal  0.104843 
 
 
-
 
NC_011138  MADE_01717  putative response regulator  38.81 
 
 
568 aa  99  7e-20  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_010172  Mext_0967  diguanylate cyclase  39.23 
 
 
457 aa  99  7e-20  Methylobacterium extorquens PA1  Bacteria  normal  0.555277  normal  0.0207283 
 
 
-
 
NC_013223  Dret_2370  response regulator receiver modulated metal dependent phosphohydrolase  39.74 
 
 
370 aa  99  8e-20  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_0907  response regulator receiver modulated diguanylate cyclase  39.23 
 
 
457 aa  98.6  1e-19  Methylobacterium populi BJ001  Bacteria  normal  0.401363  normal  0.40647 
 
 
-
 
NC_010511  M446_6679  response regulator receiver modulated diguanylate cyclase  37.88 
 
 
457 aa  97.8  2e-19  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_011989  Avi_1750  response regulator PleD  36.92 
 
 
457 aa  97.1  3e-19  Agrobacterium vitis S4  Bacteria  normal  0.263569  n/a   
 
 
-
 
NC_013173  Dbac_2998  response regulator receiver protein  34.62 
 
 
377 aa  97.1  3e-19  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU2574  response regulator  39.22 
 
 
368 aa  96.7  4e-19  Geobacter sulfurreducens PCA  Bacteria  normal  0.482084  n/a   
 
 
-
 
NC_009943  Dole_1136  response regulator receiver modulated metal dependent phosphohydrolase  36.42 
 
 
348 aa  96.3  5e-19  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_0045  adenylate/guanylate cyclase  34.64 
 
 
382 aa  96.3  5e-19  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_010505  Mrad2831_1864  response regulator receiver modulated diguanylate cyclase  39.23 
 
 
457 aa  96.3  6e-19  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.831894  normal  0.121309 
 
 
-
 
NC_007413  Ava_4136  response regulator receiver Signal transduction histidine kinase  38.36 
 
 
440 aa  95.5  9e-19  Anabaena variabilis ATCC 29413  Bacteria  decreased coverage  0.00000660181  hitchhiker  0.00876613 
 
 
-
 
NC_011894  Mnod_7417  response regulator receiver modulated diguanylate cyclase  37.12 
 
 
457 aa  95.5  1e-18  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.196799  n/a   
 
 
-
 
NC_009485  BBta_5808  sensor histidine kinase  34.62 
 
 
1299 aa  94  2e-18  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.284316  normal 
 
 
-
 
NC_013522  Taci_1373  response regulator receiver modulated metal dependent phosphohydrolase  34.18 
 
 
365 aa  93.2  4e-18  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  n/a   
 
 
-
 
NC_008789  Hhal_2157  response regulator receiver protein  34.94 
 
 
577 aa  92.8  5e-18  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_007575  Suden_1924  response regulator receiver (CheY-like) modulated metal dependent phosphohydrolase  37.06 
 
 
367 aa  92.8  6e-18  Sulfurimonas denitrificans DSM 1251  Bacteria  normal  0.620973  n/a   
 
 
-
 
NC_007298  Daro_2902  response regulator receiver  36.49 
 
 
350 aa  92.4  8e-18  Dechloromonas aromatica RCB  Bacteria  normal  0.1984  normal  0.246098 
 
 
-
 
NC_004311  BRA0610  response regulator PleD  36.64 
 
 
461 aa  91.7  1e-17  Brucella suis 1330  Bacteria  normal  0.961713  n/a   
 
 
-
 
NC_010001  Cphy_0512  response regulator receiver modulated metal dependent phosphohydrolase  36.84 
 
 
368 aa  91.7  1e-17  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.00189837  n/a   
 
 
-
 
NC_007406  Nwi_1432  response regulator PleD  36.92 
 
 
457 aa  91.7  1e-17  Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_3038  response regulator PleD  35.38 
 
 
457 aa  91.7  1e-17  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.372566  normal  0.319547 
 
 
-
 
NC_009504  BOV_A0575  response regulator PleD  36.64 
 
 
456 aa  91.7  1e-17  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_011901  Tgr7_0081  two component transcriptional regulator, AraC family  35.19 
 
 
399 aa  92  1e-17  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_1018  response regulator receiver sensor signal transduction histidine kinase  33.86 
 
 
441 aa  91.3  2e-17  Geobacter bemidjiensis Bem  Bacteria  hitchhiker  0.00729938  n/a   
 
 
-
 
NC_011729  PCC7424_5086  response regulator receiver modulated diguanylate cyclase  39.55 
 
 
465 aa  91.3  2e-17  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_009668  Oant_3677  response regulator PleD  38.46 
 
 
461 aa  90.9  2e-17  Ochrobactrum anthropi ATCC 49188  Bacteria  decreased coverage  0.00345303  n/a   
 
 
-
 
NC_008576  Mmc1_3072  response regulator receiver modulated metal dependent phosphohydrolase  38.04 
 
 
353 aa  90.9  2e-17  Magnetococcus sp. MC-1  Bacteria  normal  hitchhiker  0.000480818 
 
 
-
 
NC_010338  Caul_1497  response regulator PleD  39.23 
 
 
454 aa  90.5  3e-17  Caulobacter sp. K31  Bacteria  normal  normal  0.122959 
 
 
-
 
NC_007778  RPB_2413  response regulator PleD  34.62 
 
 
457 aa  90.1  3e-17  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.592932  normal  0.173821 
 
 
-
 
NC_004578  PSPTO_1278  sensory box protein/response regulator  34.36 
 
 
705 aa  90.1  4e-17  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.517683  n/a   
 
 
-
 
NC_011004  Rpal_3541  response regulator PleD  34.62 
 
 
457 aa  89.7  4e-17  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_014248  Aazo_4465  response regulator receiver sensor signal transduction histidine kinase  36.08 
 
 
437 aa  90.1  4e-17  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_1118  response regulator receiver sensor signal transduction histidine kinase  38.89 
 
 
452 aa  89.4  6e-17  Geobacter lovleyi SZ  Bacteria  hitchhiker  0.000972917  n/a   
 
 
-
 
NC_011666  Msil_1887  adenylate/guanylate cyclase  37.24 
 
 
403 aa  89.4  6e-17  Methylocella silvestris BL2  Bacteria  n/a    normal  0.522729 
 
 
-
 
NC_007005  Psyr_1098  PAS:GGDEF  34.36 
 
 
705 aa  89  7e-17  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_007955  Mbur_2108  multisensor signal transduction histidine kinase  28.83 
 
 
492 aa  89.4  7e-17  Methanococcoides burtonii DSM 6242  Archaea  normal  n/a   
 
 
-
 
NC_011666  Msil_0424  response regulator receiver modulated diguanylate cyclase  36.92 
 
 
469 aa  89.4  7e-17  Methylocella silvestris BL2  Bacteria  n/a    normal  0.97349 
 
 
-
 
NC_009719  Plav_2815  response regulator receiver modulated diguanylate cyclase  31.76 
 
 
457 aa  89  8e-17  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.631579  normal  0.0857187 
 
 
-
 
NC_009831  Ssed_3915  response regulator receiver modulated metal dependent phosphohydrolase  32.74 
 
 
356 aa  89  8e-17  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_007964  Nham_2442  response regulator PleD  33.85 
 
 
457 aa  89  8e-17  Nitrobacter hamburgensis X14  Bacteria  normal  0.696702  n/a   
 
 
-
 
NC_013730  Slin_2507  two component, sigma54 specific, transcriptional regulator, Fis family  37.74 
 
 
488 aa  89  9e-17  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.182398 
 
 
-
 
NC_007413  Ava_0647  multi-sensor Signal transduction histidine kinase  40.98 
 
 
1741 aa  89  9e-17  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.294056 
 
 
-
 
NC_007298  Daro_2788  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  24.81 
 
 
715 aa  88.2  1e-16  Dechloromonas aromatica RCB  Bacteria  normal  0.941936  normal 
 
 
-
 
NC_007955  Mbur_0825  response regulator receiver  39.67 
 
 
204 aa  88.2  1e-16  Methanococcoides burtonii DSM 6242  Archaea  normal  0.751719  n/a   
 
 
-
 
NC_010571  Oter_3794  response regulator receiver sensor signal transduction histidine kinase  36.81 
 
 
376 aa  88.6  1e-16  Opitutus terrae PB90-1  Bacteria  normal  0.0277983  normal  0.543799 
 
 
-
 
NC_008347  Mmar10_1277  response regulator receiver modulated diguanylate cyclase  36.92 
 
 
454 aa  88.2  1e-16  Maricaulis maris MCS10  Bacteria  normal  0.410696  normal  0.0388481 
 
 
-
 
NC_007498  Pcar_1055  two component signal transduction response regulator  27.6 
 
 
734 aa  87.8  2e-16  Pelobacter carbinolicus DSM 2380  Bacteria  normal  0.0148851  n/a   
 
 
-
 
NC_007925  RPC_3308  response regulator PleD  34.62 
 
 
457 aa  87.8  2e-16  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.268667  normal 
 
 
-
 
NC_008254  Meso_1348  response regulator PleD  38.46 
 
 
457 aa  87.8  2e-16  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_011884  Cyan7425_0790  multi-sensor signal transduction histidine kinase  35.62 
 
 
566 aa  87.4  2e-16  Cyanothece sp. PCC 7425  Bacteria  normal  0.391268  normal 
 
 
-
 
NC_011145  AnaeK_3557  response regulator receiver modulated diguanylate cyclase  33.54 
 
 
322 aa  87.8  2e-16  Anaeromyxobacter sp. K  Bacteria  normal  0.457648  n/a   
 
 
-
 
NC_008340  Mlg_2429  response regulator receiver modulated metal dependent phosphohydrolase  36.49 
 
 
480 aa  87.8  2e-16  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal  0.129673 
 
 
-
 
NC_014248  Aazo_4225  multi-sensor hybrid histidine kinase  35.76 
 
 
1322 aa  87  3e-16  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_3242  response regulator receiver sensor signal transduction histidine kinase  33.13 
 
 
441 aa  87  3e-16  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_010814  Glov_1546  response regulator receiver modulated metal dependent phosphohydrolase  32.78 
 
 
368 aa  87  3e-16  Geobacter lovleyi SZ  Bacteria  normal  0.61009  n/a   
 
 
-
 
NC_009012  Cthe_1805  response regulator receiver modulated diguanylate cyclase  37.29 
 
 
310 aa  87  3e-16  Clostridium thermocellum ATCC 27405  Bacteria  normal  0.0638722  n/a   
 
 
-
 
NC_007413  Ava_2150  response regulator receiver Signal transduction histidine kinase  36.73 
 
 
443 aa  85.9  6e-16  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.394463 
 
 
-
 
NC_009767  Rcas_3134  response regulator receiver protein  33.16 
 
 
200 aa  85.9  7e-16  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_4783  PAS/PAC sensor hybrid histidine kinase  26.87 
 
 
680 aa  85.5  8e-16  Anabaena variabilis ATCC 29413  Bacteria  normal  0.302794  normal 
 
 
-
 
NC_013440  Hoch_6548  response regulator receiver sensor signal transduction histidine kinase  36.11 
 
 
397 aa  85.5  8e-16  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.543575 
 
 
-
 
NC_007298  Daro_1573  response regulator receiver:ATP-binding region, ATPase-like:histidine kinase, dimerization and phosphoacceptor region  38.01 
 
 
373 aa  85.5  9e-16  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
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