Gene Plav_2050 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPlav_2050 
Symbol 
ID5455332 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParvibaculum lavamentivorans DS-1 
KingdomBacteria 
Replicon accessionNC_009719 
Strand
Start bp2236458 
End bp2237993 
Gene Length1536 bp 
Protein Length511 aa 
Translation table11 
GC content65% 
IMG OID640877627 
Producttwo component, sigma54 specific, Fis family transcriptional regulator 
Protein accessionYP_001413321 
Protein GI154252497 
COG category[T] Signal transduction mechanisms 
COG ID[COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value0.155124 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones30 
Fosmid unclonability p-value0.000156568 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGACCCAGG CCATTCTTAT TGTGGATGAC GATCCGGCGC AGCGGCGGAT CCTGGAGGAG 
GTCGTCAACC GTGACGGCTA CCGAGCCATC CCCGTGGATG GCGGCGAGGC GGCACTGGCC
TATCTCGAGG GGCCCGGCGG CGCGGAAATC TCGCTGGTGA TTCTCGATCT GGTCATGCCC
GGCATCGACG GGATGGAGGT GCTGAAGCGC GTCCACCCGA ACAAGCCGAA CCTGCCCGTG
ATCGTGCTGA CCGCCCATGG CGGCATCGAA ACGGTGGTGA ACGTGATGCG CGAAGGCGCC
TCCGACTTCG TGGTGAAGCC GGTCAGCCCC GAACGCCTCC ACGTCTCGAT GCGCAACGCC
CTCAAGGTGA ACGCGCTGAC GGGCGAGATC AGCCGCCTCC AGAAACGCAA ATCCGGCCAG
CTCACCTTCG CCGACATCAT CGCGCCGAGC GCCGCCATGG CACCGGTCAT CCGCCTCGGC
AAGCGCGCCG CGCAATCGAA CATCCCGATC CTGATCGAAG GCGAGTCGGG CGTCGGCAAG
GAACTGATCG CCGCCGCCAT CCAGGGCGAA GGCGACCGCG CCGGCAAACC GTTCGTGACG
GTGAACTGCG GCGCGATCCC CGAAAACCTC GTCGAGAGCA TCCTGTTCGG CCATGAAAAG
GGCGCCTTCA CCGGCGCGTC CGACAAACAT GCCGGCAAAT TCCAGGAAGC CTCCGGCGGC
ACACTCTTCC TCGACGAGAT CGGCGAACTG CCGCTCGACA TCCAGGTGAA GCTGCTGCGC
GCGCTGCAAC AGGGCGAGGT CGACCCCGTC GGCTCGAAGA AGCCCGTCAA GGTCGATATC
CGCCTCATCT CGGCAACCAA TCGCGAGATG CTGCAGATGG TGAAGGAGGG CCGCTTCCGC
GAAGACCTCT ATTACCGCCT CAACGTCTTC CCGATCCATG TGCCGCCGCT GCGCGAGCGC
AAGGACGACA TCCCCGAACT CGTCGCGCAT TTCATCCGCC GTCTCGCGGC GGAAGAAGGA
AAGCCGGTCG TCGGCATCTC GCGCGACGCG CTCTCGATGC TCTGCGCCTA TGAATGGCCG
GGCAATGTGC GCCAGATCGA AAACACGATC TTCCGCGCCA TCGTGCTTTG CGACGGCGAG
ATGCTCGAAG TCTCCGACTT CCCGCAGATC GCCAGCATGG TGGACGGCTA CCAGGAAGCG
GCCATGCCGC GCGCGGCCGC CACCACCGCC ACCCATGCAC CGCACGCCAT CGGCGAAGCG
GCGGCGACGG ATACCGGCGC ACCGCTTTAC GCAGCCCAGC CGCAACAGAC CAACACGCTG
GCGGATTTCG CCCGCTCGAA CTTCTCCGAC GGCATCTCGA TCACGGATGA AGCCGGCAAT
GTCAGGAAGC TTGAAGACAT CGAAGCGGAA ATGATCCGCC TCGCCATCGA CAAGTACAAG
GGCCACATGA CGGAAGTCGC CCGCCGCCTC GGCATCGGCC GCTCGACGCT CTACCGCAAG
GTGCGCGAAA TGGGCCTCGA GGTGCGCGAG AACTGA
 
Protein sequence
MTQAILIVDD DPAQRRILEE VVNRDGYRAI PVDGGEAALA YLEGPGGAEI SLVILDLVMP 
GIDGMEVLKR VHPNKPNLPV IVLTAHGGIE TVVNVMREGA SDFVVKPVSP ERLHVSMRNA
LKVNALTGEI SRLQKRKSGQ LTFADIIAPS AAMAPVIRLG KRAAQSNIPI LIEGESGVGK
ELIAAAIQGE GDRAGKPFVT VNCGAIPENL VESILFGHEK GAFTGASDKH AGKFQEASGG
TLFLDEIGEL PLDIQVKLLR ALQQGEVDPV GSKKPVKVDI RLISATNREM LQMVKEGRFR
EDLYYRLNVF PIHVPPLRER KDDIPELVAH FIRRLAAEEG KPVVGISRDA LSMLCAYEWP
GNVRQIENTI FRAIVLCDGE MLEVSDFPQI ASMVDGYQEA AMPRAAATTA THAPHAIGEA
AATDTGAPLY AAQPQQTNTL ADFARSNFSD GISITDEAGN VRKLEDIEAE MIRLAIDKYK
GHMTEVARRL GIGRSTLYRK VREMGLEVRE N