Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Plav_2050 |
Symbol | |
ID | 5455332 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Parvibaculum lavamentivorans DS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009719 |
Strand | - |
Start bp | 2236458 |
End bp | 2237993 |
Gene Length | 1536 bp |
Protein Length | 511 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 640877627 |
Product | two component, sigma54 specific, Fis family transcriptional regulator |
Protein accession | YP_001413321 |
Protein GI | 154252497 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 0.155124 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 30 |
Fosmid unclonability p-value | 0.000156568 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGACCCAGG CCATTCTTAT TGTGGATGAC GATCCGGCGC AGCGGCGGAT CCTGGAGGAG GTCGTCAACC GTGACGGCTA CCGAGCCATC CCCGTGGATG GCGGCGAGGC GGCACTGGCC TATCTCGAGG GGCCCGGCGG CGCGGAAATC TCGCTGGTGA TTCTCGATCT GGTCATGCCC GGCATCGACG GGATGGAGGT GCTGAAGCGC GTCCACCCGA ACAAGCCGAA CCTGCCCGTG ATCGTGCTGA CCGCCCATGG CGGCATCGAA ACGGTGGTGA ACGTGATGCG CGAAGGCGCC TCCGACTTCG TGGTGAAGCC GGTCAGCCCC GAACGCCTCC ACGTCTCGAT GCGCAACGCC CTCAAGGTGA ACGCGCTGAC GGGCGAGATC AGCCGCCTCC AGAAACGCAA ATCCGGCCAG CTCACCTTCG CCGACATCAT CGCGCCGAGC GCCGCCATGG CACCGGTCAT CCGCCTCGGC AAGCGCGCCG CGCAATCGAA CATCCCGATC CTGATCGAAG GCGAGTCGGG CGTCGGCAAG GAACTGATCG CCGCCGCCAT CCAGGGCGAA GGCGACCGCG CCGGCAAACC GTTCGTGACG GTGAACTGCG GCGCGATCCC CGAAAACCTC GTCGAGAGCA TCCTGTTCGG CCATGAAAAG GGCGCCTTCA CCGGCGCGTC CGACAAACAT GCCGGCAAAT TCCAGGAAGC CTCCGGCGGC ACACTCTTCC TCGACGAGAT CGGCGAACTG CCGCTCGACA TCCAGGTGAA GCTGCTGCGC GCGCTGCAAC AGGGCGAGGT CGACCCCGTC GGCTCGAAGA AGCCCGTCAA GGTCGATATC CGCCTCATCT CGGCAACCAA TCGCGAGATG CTGCAGATGG TGAAGGAGGG CCGCTTCCGC GAAGACCTCT ATTACCGCCT CAACGTCTTC CCGATCCATG TGCCGCCGCT GCGCGAGCGC AAGGACGACA TCCCCGAACT CGTCGCGCAT TTCATCCGCC GTCTCGCGGC GGAAGAAGGA AAGCCGGTCG TCGGCATCTC GCGCGACGCG CTCTCGATGC TCTGCGCCTA TGAATGGCCG GGCAATGTGC GCCAGATCGA AAACACGATC TTCCGCGCCA TCGTGCTTTG CGACGGCGAG ATGCTCGAAG TCTCCGACTT CCCGCAGATC GCCAGCATGG TGGACGGCTA CCAGGAAGCG GCCATGCCGC GCGCGGCCGC CACCACCGCC ACCCATGCAC CGCACGCCAT CGGCGAAGCG GCGGCGACGG ATACCGGCGC ACCGCTTTAC GCAGCCCAGC CGCAACAGAC CAACACGCTG GCGGATTTCG CCCGCTCGAA CTTCTCCGAC GGCATCTCGA TCACGGATGA AGCCGGCAAT GTCAGGAAGC TTGAAGACAT CGAAGCGGAA ATGATCCGCC TCGCCATCGA CAAGTACAAG GGCCACATGA CGGAAGTCGC CCGCCGCCTC GGCATCGGCC GCTCGACGCT CTACCGCAAG GTGCGCGAAA TGGGCCTCGA GGTGCGCGAG AACTGA
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Protein sequence | MTQAILIVDD DPAQRRILEE VVNRDGYRAI PVDGGEAALA YLEGPGGAEI SLVILDLVMP GIDGMEVLKR VHPNKPNLPV IVLTAHGGIE TVVNVMREGA SDFVVKPVSP ERLHVSMRNA LKVNALTGEI SRLQKRKSGQ LTFADIIAPS AAMAPVIRLG KRAAQSNIPI LIEGESGVGK ELIAAAIQGE GDRAGKPFVT VNCGAIPENL VESILFGHEK GAFTGASDKH AGKFQEASGG TLFLDEIGEL PLDIQVKLLR ALQQGEVDPV GSKKPVKVDI RLISATNREM LQMVKEGRFR EDLYYRLNVF PIHVPPLRER KDDIPELVAH FIRRLAAEEG KPVVGISRDA LSMLCAYEWP GNVRQIENTI FRAIVLCDGE MLEVSDFPQI ASMVDGYQEA AMPRAAATTA THAPHAIGEA AATDTGAPLY AAQPQQTNTL ADFARSNFSD GISITDEAGN VRKLEDIEAE MIRLAIDKYK GHMTEVARRL GIGRSTLYRK VREMGLEVRE N
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