Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TDE1969 |
Symbol | |
ID | 2741532 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Treponema denticola ATCC 35405 |
Kingdom | Bacteria |
Replicon accession | NC_002967 |
Strand | - |
Start bp | 1983169 |
End bp | 1984590 |
Gene Length | 1422 bp |
Protein Length | 473 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 637160859 |
Product | sigma-54 dependent transcriptional regulator/response regulator |
Protein accession | NP_972572 |
Protein GI | 42527474 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.440374 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAAATTCA GTATTTTGGT TATTGATGAC GAAAAAAATA TTCGTGAAGG CCTTGCGATG GCCTTGGAAG ATGAAGGCTA TGAAGTAATT ACTGCCGATA ACGGAAAAAC AGGTTTGGAT ATTGCCTTAA AAGACGAAGT CGATCTTGTA ATTACCGATC TAAAAATGCC TGAAATAAGC GGTGAAGAGG TCTTACGCGA AGTTATTTCA AAAACTCCGG GGGTTCCCGT AATTGTTTTA ACCGGACACG GGACGGTAGA AACGGCTGTT GAAGCCATGA GGATGGGGGC CTATGATTTT TTAACCAAGC CCTTGGATTT GGAACGCCTT TTTCTTTTAG TAAAAAGAGC CTTACAAAAC AGGGCCCTTG TTCTGCAAAA TAGGGCACTC TTACATGACA TTGAAACCAA ACAAAGTTTT GAAAATATTA TAGGCAAGAG CCCTCTTATG GAAAAGGTTT TTGAGAATAT AAAAAAAGTT GCGCCGACAA AGGCCAGCGT CTTAATTACC GGAGAAACCG GAGTCGGAAA AGAATTGATA GCTCGAGCCA TTCATAATCT TTCAAACCGT AAAGATAAGC CCTTTGTTCA AGTCCACTGT GCGTCCTTTG CCGAAAGTCT TTTGGAGTCC GAGCTTTTCG GTCATGAAAA AGGAGCCTTT ACAGGGGCCG TACAACGCAG CCGAGGCCGC TTTGAAATTG CAAACGGCGG TTCTCTTTTT TTGGACGAAA TAGGCGAAGT CAATCAAATG ATACAGGTAA AACTTTTGCG GGTTCTTCAA GAAAAAAAGT TTGAGAGGGT AGGAGGTTCT GAAACTATTA GCGTAGATAC AAGGATAATC GCCGCAACAA ACAGGGATTT GGTAGAAGAA ATAAAAAAAG GAAATTTTAG GGAAGATCTT TATTTTAGAT TGAATGTAGT TCATATTCAC GTGCCTCCCT TGCGTGAACG CAAGGAGGAC ATTCCTCTTT TGGTTGCTGC CTTTATCAAA GACTTTGCAG AGGAGAACGG TAAAAAAATA GATTCTATGG AACCTCGTGC AAGAGCTGCA ATTTATAATT ATGAGTGGCC GGGAAATATA AGGCAGCTTC AAAACTGTAT TCAAAGTGCC GTTGTAATGA GCTCCGATAA TGTAATTCAC TTTGACGACT TACCGGAAAC ATTGCGCGAA AAGGCCGAGG CTTCTTCAAT CCGTATACCG ATGGGAGTAA ATATGGCCGA AGCCGAAAAG CAAATTATTT TGCAGACTCT TGCAAACCAA AATAATAATA AATCCAAGAC AGCCGATATT TTAGGAATAG GCCGAAGAAC CCTCCATCGA AAACTTGATG AATATGATGC GGAGATTAAA GATGATACTT CGCGAATGTT GGAAGGAAAA GAAAATCAAT CCAAAAAGGA AAAAGTAAAT GGCAAAAAAT AA
|
Protein sequence | MKFSILVIDD EKNIREGLAM ALEDEGYEVI TADNGKTGLD IALKDEVDLV ITDLKMPEIS GEEVLREVIS KTPGVPVIVL TGHGTVETAV EAMRMGAYDF LTKPLDLERL FLLVKRALQN RALVLQNRAL LHDIETKQSF ENIIGKSPLM EKVFENIKKV APTKASVLIT GETGVGKELI ARAIHNLSNR KDKPFVQVHC ASFAESLLES ELFGHEKGAF TGAVQRSRGR FEIANGGSLF LDEIGEVNQM IQVKLLRVLQ EKKFERVGGS ETISVDTRII AATNRDLVEE IKKGNFREDL YFRLNVVHIH VPPLRERKED IPLLVAAFIK DFAEENGKKI DSMEPRARAA IYNYEWPGNI RQLQNCIQSA VVMSSDNVIH FDDLPETLRE KAEASSIRIP MGVNMAEAEK QIILQTLANQ NNNKSKTADI LGIGRRTLHR KLDEYDAEIK DDTSRMLEGK ENQSKKEKVN GKK
|
| |