Gene TDE1969 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTDE1969 
Symbol 
ID2741532 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameTreponema denticola ATCC 35405 
KingdomBacteria 
Replicon accessionNC_002967 
Strand
Start bp1983169 
End bp1984590 
Gene Length1422 bp 
Protein Length473 aa 
Translation table11 
GC content40% 
IMG OID637160859 
Productsigma-54 dependent transcriptional regulator/response regulator 
Protein accessionNP_972572 
Protein GI42527474 
COG category[T] Signal transduction mechanisms 
COG ID[COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.440374 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAATTCA GTATTTTGGT TATTGATGAC GAAAAAAATA TTCGTGAAGG CCTTGCGATG 
GCCTTGGAAG ATGAAGGCTA TGAAGTAATT ACTGCCGATA ACGGAAAAAC AGGTTTGGAT
ATTGCCTTAA AAGACGAAGT CGATCTTGTA ATTACCGATC TAAAAATGCC TGAAATAAGC
GGTGAAGAGG TCTTACGCGA AGTTATTTCA AAAACTCCGG GGGTTCCCGT AATTGTTTTA
ACCGGACACG GGACGGTAGA AACGGCTGTT GAAGCCATGA GGATGGGGGC CTATGATTTT
TTAACCAAGC CCTTGGATTT GGAACGCCTT TTTCTTTTAG TAAAAAGAGC CTTACAAAAC
AGGGCCCTTG TTCTGCAAAA TAGGGCACTC TTACATGACA TTGAAACCAA ACAAAGTTTT
GAAAATATTA TAGGCAAGAG CCCTCTTATG GAAAAGGTTT TTGAGAATAT AAAAAAAGTT
GCGCCGACAA AGGCCAGCGT CTTAATTACC GGAGAAACCG GAGTCGGAAA AGAATTGATA
GCTCGAGCCA TTCATAATCT TTCAAACCGT AAAGATAAGC CCTTTGTTCA AGTCCACTGT
GCGTCCTTTG CCGAAAGTCT TTTGGAGTCC GAGCTTTTCG GTCATGAAAA AGGAGCCTTT
ACAGGGGCCG TACAACGCAG CCGAGGCCGC TTTGAAATTG CAAACGGCGG TTCTCTTTTT
TTGGACGAAA TAGGCGAAGT CAATCAAATG ATACAGGTAA AACTTTTGCG GGTTCTTCAA
GAAAAAAAGT TTGAGAGGGT AGGAGGTTCT GAAACTATTA GCGTAGATAC AAGGATAATC
GCCGCAACAA ACAGGGATTT GGTAGAAGAA ATAAAAAAAG GAAATTTTAG GGAAGATCTT
TATTTTAGAT TGAATGTAGT TCATATTCAC GTGCCTCCCT TGCGTGAACG CAAGGAGGAC
ATTCCTCTTT TGGTTGCTGC CTTTATCAAA GACTTTGCAG AGGAGAACGG TAAAAAAATA
GATTCTATGG AACCTCGTGC AAGAGCTGCA ATTTATAATT ATGAGTGGCC GGGAAATATA
AGGCAGCTTC AAAACTGTAT TCAAAGTGCC GTTGTAATGA GCTCCGATAA TGTAATTCAC
TTTGACGACT TACCGGAAAC ATTGCGCGAA AAGGCCGAGG CTTCTTCAAT CCGTATACCG
ATGGGAGTAA ATATGGCCGA AGCCGAAAAG CAAATTATTT TGCAGACTCT TGCAAACCAA
AATAATAATA AATCCAAGAC AGCCGATATT TTAGGAATAG GCCGAAGAAC CCTCCATCGA
AAACTTGATG AATATGATGC GGAGATTAAA GATGATACTT CGCGAATGTT GGAAGGAAAA
GAAAATCAAT CCAAAAAGGA AAAAGTAAAT GGCAAAAAAT AA
 
Protein sequence
MKFSILVIDD EKNIREGLAM ALEDEGYEVI TADNGKTGLD IALKDEVDLV ITDLKMPEIS 
GEEVLREVIS KTPGVPVIVL TGHGTVETAV EAMRMGAYDF LTKPLDLERL FLLVKRALQN
RALVLQNRAL LHDIETKQSF ENIIGKSPLM EKVFENIKKV APTKASVLIT GETGVGKELI
ARAIHNLSNR KDKPFVQVHC ASFAESLLES ELFGHEKGAF TGAVQRSRGR FEIANGGSLF
LDEIGEVNQM IQVKLLRVLQ EKKFERVGGS ETISVDTRII AATNRDLVEE IKKGNFREDL
YFRLNVVHIH VPPLRERKED IPLLVAAFIK DFAEENGKKI DSMEPRARAA IYNYEWPGNI
RQLQNCIQSA VVMSSDNVIH FDDLPETLRE KAEASSIRIP MGVNMAEAEK QIILQTLANQ
NNNKSKTADI LGIGRRTLHR KLDEYDAEIK DDTSRMLEGK ENQSKKEKVN GKK