More than 300 homologs were found in PanDaTox collection
for query gene Pfl01_0640 on replicon NC_007492
Organism: Pseudomonas fluorescens Pf0-1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007492  Pfl01_0640  two component LuxR family transcriptional regulator  100 
 
 
269 aa  550  1e-156  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_4590  two component LuxR family transcriptional regulator  69.62 
 
 
258 aa  352  2.9999999999999997e-96  Pseudomonas putida W619  Bacteria  normal  normal  0.038066 
 
 
-
 
NC_010322  PputGB1_0619  two component LuxR family transcriptional regulator  68.08 
 
 
258 aa  352  5e-96  Pseudomonas putida GB-1  Bacteria  normal  normal  0.0738447 
 
 
-
 
NC_002947  PP_0574  LuxR family DNA-binding response regulator  66.02 
 
 
258 aa  343  1e-93  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_0613  two component LuxR family transcriptional regulator  65.25 
 
 
258 aa  340  2e-92  Pseudomonas putida F1  Bacteria  normal  0.0682847  normal 
 
 
-
 
NC_007005  Psyr_4376  LuxR response regulator receiver  66.8 
 
 
265 aa  325  4.0000000000000003e-88  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.945677 
 
 
-
 
NC_004578  PSPTO_4836  DNA binding response regulator, LuxR family  66.53 
 
 
260 aa  318  7e-86  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.765839  n/a   
 
 
-
 
NC_009656  PSPA7_4863  LuxR family DNA-binding response regulator  51.19 
 
 
272 aa  250  2e-65  Pseudomonas aeruginosa PA7  Bacteria  normal  0.090532  n/a   
 
 
-
 
NC_008463  PA14_55810  putative two-component response regulator  50.59 
 
 
275 aa  250  2e-65  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_008340  Mlg_2151  two component LuxR family transcriptional regulator  40.25 
 
 
264 aa  163  3e-39  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal  0.104213 
 
 
-
 
NC_011729  PCC7424_2881  two component transcriptional regulator, LuxR family  28.45 
 
 
212 aa  99.4  5e-20  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_011831  Cagg_0340  two component transcriptional regulator, LuxR family  31.54 
 
 
217 aa  95.5  7e-19  Chloroflexus aggregans DSM 9485  Bacteria  hitchhiker  0.00614189  hitchhiker  0.00317709 
 
 
-
 
NC_014210  Ndas_3120  two component transcriptional regulator, LuxR family  30.67 
 
 
218 aa  94  3e-18  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.954631  normal 
 
 
-
 
NC_011901  Tgr7_2171  two component transcriptional regulator, LuxR family  29.61 
 
 
227 aa  93.6  3e-18  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS5263  DNA-binding response regulator  31.23 
 
 
215 aa  92.4  7e-18  Bacillus anthracis str. Sterne  Bacteria  normal  0.24037  n/a   
 
 
-
 
NC_005957  BT9727_5091  response regulator  31.23 
 
 
215 aa  92.4  7e-18  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK5108  response regulator  31.23 
 
 
215 aa  92.4  7e-18  Bacillus cereus E33L  Bacteria  decreased coverage  0.00235048  n/a   
 
 
-
 
NC_007530  GBAA_5661  DNA-binding response regulator  31.23 
 
 
215 aa  92.4  7e-18  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_5506  DNA-binding response regulator  31.23 
 
 
215 aa  92.4  7e-18  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_010184  BcerKBAB4_5205  two component LuxR family transcriptional regulator  30 
 
 
215 aa  90.9  2e-17  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_008148  Rxyl_2809  two component LuxR family transcriptional regulator  28.93 
 
 
219 aa  90.9  2e-17  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B5417  DNA-binding response regulator  30.56 
 
 
215 aa  90.5  3e-17  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_003909  BCE_5540  DNA-binding response regulator  31.35 
 
 
215 aa  89.7  4e-17  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A5591  DNA-binding response regulator  31.35 
 
 
215 aa  90.1  4e-17  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A5535  DNA-binding response regulator  30.16 
 
 
215 aa  89  7e-17  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_014210  Ndas_4366  two component transcriptional regulator, LuxR family  33.47 
 
 
225 aa  87.8  2e-16  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_008345  Sfri_0620  two component transcriptional regulator, LuxR family protein  30.04 
 
 
209 aa  86.7  4e-16  Shewanella frigidimarina NCIMB 400  Bacteria  unclonable  0.000000000275655  n/a   
 
 
-
 
NC_013946  Mrub_0806  two component LuxR family transcriptional regulator  29.11 
 
 
216 aa  85.5  8e-16  Meiothermus ruber DSM 1279  Bacteria  normal  normal 
 
 
-
 
NC_008025  Dgeo_0315  two component LuxR family transcriptional regulator  26.69 
 
 
214 aa  85.5  8e-16  Deinococcus geothermalis DSM 11300  Bacteria  normal  hitchhiker  0.0084678 
 
 
-
 
NC_007604  Synpcc7942_1860  two component LuxR family transcriptional regulator  29.66 
 
 
235 aa  85.5  9e-16  Synechococcus elongatus PCC 7942  Bacteria  normal  normal 
 
 
-
 
NC_013757  Gobs_4064  two component transcriptional regulator, LuxR family  34.02 
 
 
217 aa  84.7  0.000000000000001  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_014248  Aazo_0819  LuxR family two component transcriptional regulator  29.49 
 
 
227 aa  84.3  0.000000000000002  'Nostoc azollae' 0708  Bacteria  normal  0.633548  n/a   
 
 
-
 
NC_008148  Rxyl_1550  two component LuxR family transcriptional regulator  33.06 
 
 
220 aa  84.3  0.000000000000002  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_008312  Tery_4323  two component LuxR family transcriptional regulator  27.39 
 
 
215 aa  84.7  0.000000000000002  Trichodesmium erythraeum IMS101  Bacteria  normal  0.115662  normal  0.727411 
 
 
-
 
NC_009664  Krad_3810  two component transcriptional regulator, LuxR family  29.96 
 
 
236 aa  84  0.000000000000002  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.225059  normal  0.0261757 
 
 
-
 
NC_009668  Oant_2873  two component LuxR family transcriptional regulator  25.61 
 
 
216 aa  84  0.000000000000002  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_008700  Sama_2399  response regulator receiver protein  28.57 
 
 
201 aa  83.6  0.000000000000003  Shewanella amazonensis SB2B  Bacteria  normal  normal  0.635003 
 
 
-
 
NC_011884  Cyan7425_4627  two component transcriptional regulator, LuxR family  30.33 
 
 
226 aa  83.2  0.000000000000004  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_011884  Cyan7425_5215  two component transcriptional regulator, LuxR family  27.59 
 
 
217 aa  82.8  0.000000000000005  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_011726  PCC8801_1580  two component transcriptional regulator, LuxR family  24.57 
 
 
216 aa  82.4  0.000000000000008  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013161  Cyan8802_1605  two component transcriptional regulator, LuxR family  24.57 
 
 
216 aa  82.4  0.000000000000008  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_010625  Bphy_6192  two component LuxR family transcriptional regulator  28.15 
 
 
231 aa  82  0.000000000000009  Burkholderia phymatum STM815  Bacteria  normal  0.446565  normal  0.0472092 
 
 
-
 
NC_007298  Daro_0834  LuxR response regulator receiver  27.87 
 
 
221 aa  81.6  0.00000000000001  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.0179337 
 
 
-
 
NC_014212  Mesil_2510  two component transcriptional regulator, LuxR family  28.51 
 
 
217 aa  82  0.00000000000001  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_009092  Shew_0842  two component LuxR family transcriptional regulator  29.91 
 
 
209 aa  82  0.00000000000001  Shewanella loihica PV-4  Bacteria  hitchhiker  0.00000336278  normal 
 
 
-
 
NC_013385  Adeg_0532  two component, sigma54 specific, transcriptional regulator, Fis family  30.61 
 
 
470 aa  80.9  0.00000000000002  Ammonifex degensii KC4  Bacteria  hitchhiker  0.00706375  n/a   
 
 
-
 
NC_011368  Rleg2_5393  GAF sensor hybrid histidine kinase  38.26 
 
 
2099 aa  80.5  0.00000000000003  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.0480029  normal  0.0859175 
 
 
-
 
NC_008340  Mlg_1669  two component LuxR family transcriptional regulator  27.23 
 
 
221 aa  80.5  0.00000000000003  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_1106  two component LuxR family transcriptional regulator  30.58 
 
 
223 aa  79.7  0.00000000000004  Delftia acidovorans SPH-1  Bacteria  normal  0.584765  normal 
 
 
-
 
NC_013525  Tter_1109  two component transcriptional regulator, LuxR family  29.39 
 
 
218 aa  79.7  0.00000000000005  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_012848  Rleg_5109  GAF sensor hybrid histidine kinase  37.39 
 
 
2099 aa  79.3  0.00000000000005  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.0669819 
 
 
-
 
NC_010506  Swoo_0970  two component LuxR family transcriptional regulator  29.91 
 
 
209 aa  79  0.00000000000009  Shewanella woodyi ATCC 51908  Bacteria  normal  0.0307407  normal 
 
 
-
 
NC_011726  PCC8801_1812  two component transcriptional regulator, LuxR family  27.05 
 
 
231 aa  79  0.00000000000009  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013161  Cyan8802_1838  two component transcriptional regulator, LuxR family  27.05 
 
 
231 aa  79  0.00000000000009  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_011831  Cagg_3359  two component transcriptional regulator, LuxR family  28.06 
 
 
219 aa  78.6  0.00000000000009  Chloroflexus aggregans DSM 9485  Bacteria  hitchhiker  0.00321115  hitchhiker  0.000132937 
 
 
-
 
NC_010571  Oter_0804  two component LuxR family transcriptional regulator  26.92 
 
 
204 aa  78.2  0.0000000000001  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
NC_013173  Dbac_0022  GAF sensor hybrid histidine kinase  41.74 
 
 
1356 aa  78.6  0.0000000000001  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_0929  two component LuxR family transcriptional regulator  30.64 
 
 
209 aa  78.6  0.0000000000001  Shewanella sediminis HAW-EB3  Bacteria  unclonable  0.0000000567962  normal 
 
 
-
 
NC_009720  Xaut_1115  response regulator receiver protein  36.52 
 
 
127 aa  78.6  0.0000000000001  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_008789  Hhal_1965  two component LuxR family transcriptional regulator  28.21 
 
 
217 aa  78.6  0.0000000000001  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_009901  Spea_0829  two component LuxR family transcriptional regulator  28.63 
 
 
209 aa  77.8  0.0000000000002  Shewanella pealeana ATCC 700345  Bacteria  hitchhiker  0.00236991  n/a   
 
 
-
 
NC_007794  Saro_1236  two component LuxR family transcriptional regulator  29.24 
 
 
208 aa  77.8  0.0000000000002  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.23752  n/a   
 
 
-
 
NC_009767  Rcas_4428  two component LuxR family transcriptional regulator  29.41 
 
 
231 aa  77.8  0.0000000000002  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_008578  Acel_1760  two component LuxR family transcriptional regulator  31.2 
 
 
303 aa  77.4  0.0000000000002  Acidothermus cellulolyticus 11B  Bacteria  normal  normal  0.887336 
 
 
-
 
NC_007413  Ava_2324  two component LuxR family transcriptional regulator  27.69 
 
 
245 aa  77  0.0000000000003  Anabaena variabilis ATCC 29413  Bacteria  normal  0.42123  normal 
 
 
-
 
NC_009621  Smed_5633  response regulator receiver protein  27.91 
 
 
218 aa  77.4  0.0000000000003  Sinorhizobium medicae WSM419  Bacteria  normal  0.938686  normal  0.508699 
 
 
-
 
NC_007492  Pfl01_5184  response regulator receiver domain-containing protein  37.82 
 
 
148 aa  77  0.0000000000003  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.0546005  normal  0.118263 
 
 
-
 
NC_013595  Sros_4219  response regulator receiver protein  29.34 
 
 
217 aa  77  0.0000000000003  Streptosporangium roseum DSM 43021  Bacteria  hitchhiker  0.0092025  hitchhiker  0.000784643 
 
 
-
 
NC_013595  Sros_0279  response regulator receiver protein  26.36 
 
 
216 aa  77  0.0000000000003  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013216  Dtox_2180  GAF sensor hybrid histidine kinase  37.5 
 
 
922 aa  76.6  0.0000000000004  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  0.238731  normal  0.0123004 
 
 
-
 
NC_011831  Cagg_2359  two component transcriptional regulator, LuxR family  27.31 
 
 
247 aa  76.6  0.0000000000004  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.0990205  decreased coverage  0.00133027 
 
 
-
 
NC_011894  Mnod_6353  GAF sensor hybrid histidine kinase  38.26 
 
 
1839 aa  76.3  0.0000000000005  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_008699  Noca_1865  response regulator receiver  37.93 
 
 
224 aa  76.3  0.0000000000005  Nocardioides sp. JS614  Bacteria  normal  0.59899  n/a   
 
 
-
 
NC_008255  CHU_2080  sensor histidine kinase/response regulator fusion protein  37.93 
 
 
1158 aa  75.9  0.0000000000006  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal  0.264996 
 
 
-
 
NC_013510  Tcur_2644  GAF sensor hybrid histidine kinase  34.4 
 
 
1303 aa  75.9  0.0000000000007  Thermomonospora curvata DSM 43183  Bacteria  normal  0.229306  n/a   
 
 
-
 
NC_009767  Rcas_1355  two component LuxR family transcriptional regulator  30.25 
 
 
230 aa  75.9  0.0000000000007  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_009523  RoseRS_4323  two component LuxR family transcriptional regulator  29.08 
 
 
246 aa  75.9  0.0000000000007  Roseiflexus sp. RS-1  Bacteria  normal  0.239635  normal  0.317944 
 
 
-
 
NC_010501  PputW619_4847  response regulator receiver protein  34.43 
 
 
147 aa  75.5  0.0000000000009  Pseudomonas putida W619  Bacteria  normal  0.0738416  normal 
 
 
-
 
NC_007404  Tbd_2464  two component LuxR family transcriptional regulator  26.48 
 
 
221 aa  75.5  0.0000000000009  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  normal 
 
 
-
 
NC_011729  PCC7424_2955  two component transcriptional regulator, LuxR family  26.14 
 
 
231 aa  75.5  0.0000000000009  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.800941 
 
 
-
 
NC_011831  Cagg_1769  two component transcriptional regulator, LuxR family  31.25 
 
 
219 aa  74.7  0.000000000001  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.221401  normal  0.0578747 
 
 
-
 
NC_013595  Sros_5304  response regulator receiver protein  31.65 
 
 
220 aa  75.5  0.000000000001  Streptosporangium roseum DSM 43021  Bacteria  normal  0.128918  normal 
 
 
-
 
NC_008530  LGAS_1735  DNA-binding response regulator  32.82 
 
 
228 aa  74.7  0.000000000001  Lactobacillus gasseri ATCC 33323  Bacteria  normal  normal 
 
 
-
 
NC_010718  Nther_0747  two component transcriptional regulator, LuxR family  26.12 
 
 
232 aa  75.1  0.000000000001  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  0.643618  normal  0.38139 
 
 
-
 
NC_008740  Maqu_3089  two component LuxR family transcriptional regulator  27.9 
 
 
219 aa  75.1  0.000000000001  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_005707  BCE_A0213  DNA-binding response regulator  35.16 
 
 
227 aa  74.3  0.000000000002  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_3421  two component LuxR family transcriptional regulator  28.98 
 
 
223 aa  74.7  0.000000000002  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.0556432 
 
 
-
 
NC_013161  Cyan8802_3680  two component transcriptional regulator, LuxR family  26.18 
 
 
223 aa  73.9  0.000000000002  Cyanothece sp. PCC 8802  Bacteria  normal  normal  0.233635 
 
 
-
 
NC_011830  Dhaf_1740  two component transcriptional regulator, winged helix family  31.85 
 
 
225 aa  73.9  0.000000000002  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.00000000204942  n/a   
 
 
-
 
NC_009483  Gura_2751  two component, sigma-54 specific, Fis family transcriptional regulator  34.88 
 
 
452 aa  74.7  0.000000000002  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_013216  Dtox_3009  GAF sensor hybrid histidine kinase  34.71 
 
 
920 aa  74.3  0.000000000002  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  0.59521  normal 
 
 
-
 
NC_011726  PCC8801_2430  two component transcriptional regulator, LuxR family  26.18 
 
 
223 aa  73.9  0.000000000002  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_007651  BTH_I1849  DNA-binding response regulator NarL  27.34 
 
 
233 aa  74.3  0.000000000002  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_4937  two component transcriptional regulator, LuxR family  30.42 
 
 
224 aa  73.9  0.000000000002  Conexibacter woesei DSM 14684  Bacteria  normal  0.570807  normal  0.210467 
 
 
-
 
NC_010511  M446_5171  GAF sensor hybrid histidine kinase  37.39 
 
 
1857 aa  73.9  0.000000000002  Methylobacterium sp. 4-46  Bacteria  normal  0.472035  normal  0.0675906 
 
 
-
 
NC_014248  Aazo_2987  LuxR family two component transcriptional regulator  26.14 
 
 
231 aa  74.7  0.000000000002  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_012793  GWCH70_1656  response regulator receiver protein  38.52 
 
 
166 aa  74.3  0.000000000002  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_008531  LEUM_0351  DNA-binding response regulator  30.13 
 
 
230 aa  74.3  0.000000000002  Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_1240  two component transcriptional regulator, winged helix family  37.78 
 
 
227 aa  74.3  0.000000000002  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.729355  normal 
 
 
-
 
NC_012803  Mlut_21900  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  30.58 
 
 
230 aa  74.3  0.000000000002  Micrococcus luteus NCTC 2665  Bacteria  hitchhiker  0.00486265  n/a   
 
 
-
 
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