Gene Dbac_0022 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDbac_0022 
Symbol 
ID8375653 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfomicrobium baculatum DSM 4028 
KingdomBacteria 
Replicon accessionNC_013173 
Strand
Start bp35668 
End bp39738 
Gene Length4071 bp 
Protein Length1356 aa 
Translation table11 
GC content61% 
IMG OID644999250 
ProductGAF sensor hybrid histidine kinase 
Protein accessionYP_003156568 
Protein GI256827840 
COG category[T] Signal transduction mechanisms 
COG ID[COG0642] Signal transduction histidine kinase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATTTTCG ACAACATCCG GATGAAGCCC AAGCTCCTGT TCCTGTTCAT CATGACCGGA 
ATAGTTCCTC TGGGCATCGT GGCCCTCATC GGCAGCTATT CCGCGTCCAA CGCCCTCCTC
GATCTGGCCT TTGAACAACT CGGCAGCATC CAGGCCATCA AGCGCGACAA ATTGCAGACC
ACTCTGACCG AACGCATAAA CGGACTCAAA CTCATGGCCG GGCTGAGGCA GACCCAGCAG
GCAGTGGACG ACCTGAACGC GCTCGGCGAG GAAGACCCGG CCCAACCCTA CCCCATCGAA
TCCAGTGCCT ATCAAAGAAT CCACGGCAGA TACGATTCCC AGCTCAAGGG CTACATCGCC
GTCAACGGCT TTGAAGACAT CTATCTGATC GACCGCCACA GCGGCACCGT CATGTACGCC
GCCGGCCAGG GCGAGGAGCT TGGCACCAGC CTGGCCACCG GGCGCTACCG CCATACGGCC
CTGGCCAGGC TTTGGGAGAG GGTCCTGCGC AGTGGAAACG TGGCCTTCGA GGATTTCAGC
GCCTACGAGC CAAGCGGGGG AAGTCAGGCC GCCTTCATCG GCTATCCGGT CCTCGACCTG
CAGGGCGGCG TGGCCGGAGT CATCGCCGCG CGCGTTTCGG GCGAGTTCAT CAACCAGATC
ATGCCCTCGC GGCAGGGCCT GGGCAAGTCA GGCGAATCCT ATCTGCTGCG CTGGCTCGAA
TCCCAAAAAA AGTTTGAGAT GCGCAGTGAT ATCCAGACGA TGGGCAATGG CCTCTACGTC
ATCGGCTACA CCCTGCCTCG CACGCCGGCA TACTGGCATG ACGCCGTGGA CAAGGGGTTT
GACGGAGGAG GCGGCACCTA CGAAGACAGC GCGGGCACTA CGGTGCTGGT GGCCTTCAAT
ACGCTGGACG TGCTGGGCAC CAACTGGATT CTCATCTCCA AGATCAACAA GGGCGAAATT
CTGCGCCCCA TCTGGACGTT CCTGCTGATC ATCTGCGTCA CCGGCGCGGT GCTGGCCCTC
ATGATCGCGC CCGGCGCCTA CGGCCTGGCC AAGGGCATCA GCCAGCCTTT GGAACAGGGC
GTGAACTTCG CCGAGGCCAT CTCCGCCGGA GACTTGAAGG CCCGTCTGGA TCTGCGCCAA
AAGGACGAAC TGGGCATGCT GGCCAAAGCC CTGAACAGCA TGGCCCGCAA CCTGCGCGAC
ATGGACTGGC TCAACCAAGG CAAAACAGGC CTCGACGACA CCCTGCGCGG TGAACACAGC
CCGCAGGAAC TGGCCCGGCT CTTCATCTCA TTTCTGTGCA AGCATCTGGA CAGCCAAATC
GGGCTCTTTT TCCTGCATGA TGACGGCGAA CTGGTGCTGA CCTCTTCCTA TGCCTTCACC
AACCGGCAAG GCCAGTTCTC CCGGCTGCGC GTAGGCGAAG GGCTGGTCGG CCAAGCTGCG
CTGGAAGGGG AAATTTTGAC CTTCGCCCGG GTCGAAGACG GGGCGCCGCC TTTTCATTTC
GGCCCCGGCG AAATCGTCCC CGCCCATTTT CTGGCCGCGC CCGTGTTCAT GGGCAAGGAA
TTGCTCGGCG CATTCCTCGT CGGCCGCGAG TACGCATTTT CGCCCCTGCA CAGGCAGTTC
ATCACCGACA TCGCCAAGAA CACGGCAGTT CTCTTCAACA TGGCCACCTC GCGGGGCATG
ATCGCGGACC TGTTGCGGCA GGCGCAGGAA CAGCAGGAGA TGCTGCGCGT GGCCAACGAG
GAGCTCGAAG AACAGACCAA CATGCTTAAA GAGTCCCAGA GCGAGCTGCA GGCCCAGCAG
GAAGAGCTGC AGGTCACCAA CGAGGAACTG GCCGAGCAGA CCCGCGCCCT CAAGGAATCC
GAGCGGCGGA TGCAGGATCA GCAAAACGAG TTGCGCTCCG TGAACGACAA GCTGGGCGAA
CGGGCCATGG AACTCGAAGA ACAGAAGAGC GCCATCCGCC GCAAGAACAA GGAGCTGCTG
CGCGCCCAGG AGCAACTCAA GCTCAAGGCC CAGGAACTGG AGAGCGCGAG CAGATACAAA
TCCGAATTCC TGGCCAACAT GTCCCACGAG CTGCGCACCC CGCTCAACTC CATCCTCATC
CTGTCCCAGC TGCTGTCGCA CAACAAGGAA GGCAACCTTT CCCCGAAACA GACGGAAGCG
GCCTCGGCCA TCAACTCTTC GGGCGCGGAC CTGTTGCGCC TCATCAACGA GATTCTCGAC
CTGTCCAAGG TCGAGGCGGG CAAGGTCGAA CTTCATCTGG AGGAAATGCC GCTGACATCC
ATGATTTCGG ACCTGCAAAG GGTCTTCAAA GGTGTCGCGG TGGAAAAAGG CGTTGCTTTT
CTCGTCGAAC AGGATCCGGC CCTGCCCGAA ACCATGCTCA CGGATACGCA CCGGCTGCAG
CAAGTCCTGC GCAACCTCCT GTCGAATGCC TTCAAGTTCA CGGACCACGG CAGCGTAACC
CTGTCCATCT CCCGCCCCGG ACCGGAAGTC GATCTGCCCG AAGGCATCCC CTCGGCCGAA
GAGGCGATCT GCATCGCGGT CACGGACATG GGCATCGGTA TCCCGGAGGA CAAGCAGGGC
ACTATCTTTG AGGCCTTCCG TCAGGCCGAC GGAAGCACCA GCCGCAAATA CGGCGGGACG
GGCCTCGGGC TATCCATTTC CCGGGAACTG ACCAAGCTTC TCGGCGGAGA AATCCGCCTG
CGTAGTCAGG AGGGCAAAGG CTCGACCTTC AGCCTGATCC TGCCTTTACG CCACCACGCC
GACGCGCCCA CGGACGAAAT CCGTCCCCGG GTGTCCGCCC CCGAGCCAAA AATGACGCCC
CACCAGCCTG CAAAGACGCA AGCCGAGGCG CCCATTTCCT ATCTGCAGGA CGATCGCGCC
AATCTGAAGC CCGGCGACAA ATCGCTCCTC ATCATCGAGG ACGACCAGCA TTTTGCCCGC
ATCCTGAGAG ACCAGGCGCG GGAGATGGGA TTTAAAGCCC TGCTGGCGGC CGACGGCGAA
ACCGGCCTGC ACTTTGCCGA CTTTCATGGT CCGAGCGCCA TCATCCTCGA CAACATCCTG
CCGGGCATGA ATGGCTGGAC AGTGATGGAA CGGCTTAAAA ACGATCCCAA GACGCGGCAC
ATCCCCCTGT CCTTCATCTC CGCGGAGGAT CGCAGCCTGG AAGCCATGCG CATGGGCGCG
CTGGCCTTCC TGACCAAGCC CGTAGAACTG GAAACGCTGC GCACGCTGCT CGAAAGGATT
GACTCGTTCA TCAAGAAGCC CATGCGCAGG CTGCTCGTGG TCGATGACGA TGCCTTGCAG
CGGGAGTCCA TCCGCGCACT GATCGGCAAT GGCGACGTGG AGACCGTGAC CGCGGCGTCA
GGCGCGGAAG CTTTGGGACT GCTCAAATCC CAGAACTTCG ATTGCATGAT CCTGGACCTC
GGGCTTAACG ACATGTCCGG CTTTGACGTG CTGCGGACAC TGCGCTCCGG GCCGACGCCG
TCCACCCTCC CCGTGGTCGT CTACACCGGC CGGGACCTCA GTGAAGAGGA GGAGCGCAGG
CTCTCGCGGT ACGCAGAAAG CATCATCGTC AAGGGGGCGC GCTCCCCCGA GCGTTTGCTG
GAAGAAACAA CGCTCTTCCT GCACCGCGTC CAGGCCAATC TGCCCCAGGA AAAGCAGCGC
ATGCTCCGGA CGGATACGGA GCCCGAATCC GTGCTCGACG GCCGCACAGT GCTCGTGGTC
GATGACGACA TGCGCAATAT TTTTGCGCTG ACGAGCGTTC TCGAAGAAAA AGGGATGCAG
GTCGTGGTCG CCAGGGACGG CAGCGAAAGC CTGACCAGGC TGCGTGAAAA TCCCGAAATC
GACCTGGTCC TCATGGACAT CATGATGCCG GTCATGGACG GCTACGAAGC CATGCGTGAA
ATCCGCAAAG ATCCCAAGCT CAAAGACCTG CCCATCATCG CCCTGACCGC CAAGGCCATG
AAGGGGGACA AAAACGCCTG CATCGAGGCC GGGGCCAACG ACTATCTGGC CAAACCCGTG
GACATGGACA AGTTGCTCTC GCTGCTGCGC GTCTGGCTGT ACCGGAAATG A
 
Protein sequence
MIFDNIRMKP KLLFLFIMTG IVPLGIVALI GSYSASNALL DLAFEQLGSI QAIKRDKLQT 
TLTERINGLK LMAGLRQTQQ AVDDLNALGE EDPAQPYPIE SSAYQRIHGR YDSQLKGYIA
VNGFEDIYLI DRHSGTVMYA AGQGEELGTS LATGRYRHTA LARLWERVLR SGNVAFEDFS
AYEPSGGSQA AFIGYPVLDL QGGVAGVIAA RVSGEFINQI MPSRQGLGKS GESYLLRWLE
SQKKFEMRSD IQTMGNGLYV IGYTLPRTPA YWHDAVDKGF DGGGGTYEDS AGTTVLVAFN
TLDVLGTNWI LISKINKGEI LRPIWTFLLI ICVTGAVLAL MIAPGAYGLA KGISQPLEQG
VNFAEAISAG DLKARLDLRQ KDELGMLAKA LNSMARNLRD MDWLNQGKTG LDDTLRGEHS
PQELARLFIS FLCKHLDSQI GLFFLHDDGE LVLTSSYAFT NRQGQFSRLR VGEGLVGQAA
LEGEILTFAR VEDGAPPFHF GPGEIVPAHF LAAPVFMGKE LLGAFLVGRE YAFSPLHRQF
ITDIAKNTAV LFNMATSRGM IADLLRQAQE QQEMLRVANE ELEEQTNMLK ESQSELQAQQ
EELQVTNEEL AEQTRALKES ERRMQDQQNE LRSVNDKLGE RAMELEEQKS AIRRKNKELL
RAQEQLKLKA QELESASRYK SEFLANMSHE LRTPLNSILI LSQLLSHNKE GNLSPKQTEA
ASAINSSGAD LLRLINEILD LSKVEAGKVE LHLEEMPLTS MISDLQRVFK GVAVEKGVAF
LVEQDPALPE TMLTDTHRLQ QVLRNLLSNA FKFTDHGSVT LSISRPGPEV DLPEGIPSAE
EAICIAVTDM GIGIPEDKQG TIFEAFRQAD GSTSRKYGGT GLGLSISREL TKLLGGEIRL
RSQEGKGSTF SLILPLRHHA DAPTDEIRPR VSAPEPKMTP HQPAKTQAEA PISYLQDDRA
NLKPGDKSLL IIEDDQHFAR ILRDQAREMG FKALLAADGE TGLHFADFHG PSAIILDNIL
PGMNGWTVME RLKNDPKTRH IPLSFISAED RSLEAMRMGA LAFLTKPVEL ETLRTLLERI
DSFIKKPMRR LLVVDDDALQ RESIRALIGN GDVETVTAAS GAEALGLLKS QNFDCMILDL
GLNDMSGFDV LRTLRSGPTP STLPVVVYTG RDLSEEEERR LSRYAESIIV KGARSPERLL
EETTLFLHRV QANLPQEKQR MLRTDTEPES VLDGRTVLVV DDDMRNIFAL TSVLEEKGMQ
VVVARDGSES LTRLRENPEI DLVLMDIMMP VMDGYEAMRE IRKDPKLKDL PIIALTAKAM
KGDKNACIEA GANDYLAKPV DMDKLLSLLR VWLYRK