| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plim_1915 |
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| Symbol | |
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| ID | 9138617 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Planctomyces limnophilus DSM 3776 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_014148 |
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| Strand | - |
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| Start bp | 2499143 |
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| End bp | 2500546 |
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| Gene Length | 1404 bp |
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| Protein Length | 467 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | |
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| Product | sigma-54 factor interaction domain-containing protein |
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| Protein accession | YP_003629944 |
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| Protein GI | 296122166 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0712701 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCGATGA CTCAAGGATC CCTGCTTGTC GTGGATGATG ACCGTCAGCT CGCGGAATCG
ATGGCCGATT ATCTGCGCAG CCTGGGACAT CGGACAGAGA CTTCTTTCAC CGCACGGGAT
GCCATGGCCC GTATGAAGGA GTTTCGCTTC GACATCGTGA TCTGTGATGT CAATCTTCCC
GATGAAGATG GCTTTGCTGT CCTCGAATGG GCCAACAAAG CTGTCCCGGA TACGGAAATC
ATTCTGCTGA CGGGCTATGG CACGATTGAA AGCGCTGTGG ATGCGATCCG GCTGGGTGCG
TTTGACTACC TCACCAAGCC TGTGATCGAT GAAGAGTTGA ACTTCTCCAT CCAGCGCGCA
CTAGGCAAGC GGGAAATTGT CGCTGAGAAT CGGCAGCTCA AGCAGCAACT CAATGATCGA
TTCGGTCTAT CAAACATTAT CGGGCATGAT TATCGCATGC TCAAGATGTA CGACATTATT
GAAAGTGTCG CCGACACGCG CACGACCGTG CTTGTGCTTG GCGAAAGCGG AACCGGGAAG
ACACTCACTG CCCGAGCCAT TCATCAACTC AGTAATCGTC GAGACAAGCC CTTTGTGGAG
GTCGCCTGCG GGGCCCTGCC CGATACTCTG CTGGAGAGTG AACTCTTCGG CCACGTGGCG
GGTGCATTTA CCGGGGCCTC GCACGATCGA GCAGGGAAAT TCCTGCAGGC CAATGGTGGA
ACATTGTTCC TCGATGAAAT TGCGACGGCG TCGCCGAGTT TGCAGGTCAA ACTTCTGCGT
GTGCTCCAGG ACCGCGAGTT TGAAGCGGTC GGTGGAAACA AAACCCACAA AGTCGATGTC
CGGCTGATTC TGGCGACCAA TGTCGATCTC GAAGAGGCGG TCGCCAAGGG TGAGTTCCGC
CAGGATCTGT ACTATCGAAT CAACGTGGTG ACTTTGACAC AGCCTTCGTT GCGCGAACGC
ATCAGTGATA TTCCCCTGTT GGCCGAGCAC TACCTGAAGG AATTTGTCTC ACAGACAGGC
AAGAATGTGA CCGGTTTCAG TGAGCAGGCA CTCTCTGCCA TGGCGCGTTA TCGTTGGCCA
GGGAATGTTC GAGAGCTGGT GAATGTTGTC GAACGTGCTG TCGTTCTGTG TAAGGGCTCT
GTCATTGGCC TGCAGGATCT GCCAGAAAAC TTGCGCCGCG ATGAACCGGT TGCCTTGCTG
GGGGCCGTCA CGAATGTCTC TGCGGGATCA AGCCTGAAAA CGGCGCTGGC CTCTCCCGAA
AAGCAGCTCA TTATCGATGC GCTGGAATCA CATGGGTGGA ACCGGCAATT GACGGCTGAA
GCCTTAGGGA TTAACCGCAC CACGCTCTAC AAGAAGATGA AGAAGTTCGG TATCAGCTTC
GAGCGTCATC TGATGATGTC GTAA
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| Protein sequence | MSMTQGSLLV VDDDRQLAES MADYLRSLGH RTETSFTARD AMARMKEFRF DIVICDVNLP
DEDGFAVLEW ANKAVPDTEI ILLTGYGTIE SAVDAIRLGA FDYLTKPVID EELNFSIQRA
LGKREIVAEN RQLKQQLNDR FGLSNIIGHD YRMLKMYDII ESVADTRTTV LVLGESGTGK
TLTARAIHQL SNRRDKPFVE VACGALPDTL LESELFGHVA GAFTGASHDR AGKFLQANGG
TLFLDEIATA SPSLQVKLLR VLQDREFEAV GGNKTHKVDV RLILATNVDL EEAVAKGEFR
QDLYYRINVV TLTQPSLRER ISDIPLLAEH YLKEFVSQTG KNVTGFSEQA LSAMARYRWP
GNVRELVNVV ERAVVLCKGS VIGLQDLPEN LRRDEPVALL GAVTNVSAGS SLKTALASPE
KQLIIDALES HGWNRQLTAE ALGINRTTLY KKMKKFGISF ERHLMMS
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