Gene Mpe_A3216 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMpe_A3216 
SymbolpilR 
ID4786555 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMethylibium petroleiphilum PM1 
KingdomBacteria 
Replicon accessionNC_008825 
Strand
Start bp3420162 
End bp3421775 
Gene Length1614 bp 
Protein Length537 aa 
Translation table11 
GC content71% 
IMG OID640091789 
Producttype IV pilus expression regulatory protein 
Protein accessionYP_001022404 
Protein GI124268400 
COG category[T] Signal transduction mechanisms 
COG ID[COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.422678 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCCCGG CCTCGCATTT CAGCCTGCTG GTGGTCGACG ACGAGCCTGA CCTGCGCACC 
CTCTACGAGC TGACGCTGCT GCGCGAGGGC TACGAGATCG AGACCGCAGC CTGTGTCGAG
GACGCCTGGG CGCAGCTCGC CGACCGTACG TTCAGCGCGG TGATCACCGA CATGCGTCTG
CCCGACGGCA GCGGGCTCGA CCTGCTGCAT CGCCTGGAGG AAGCCGGGCG CCGCGAGAAG
ACCATCGTCA TCACCGCCTA CGGCTCGGCG GAAAGCGCCG TCGAGGCGCT GAAGGCCGGC
GCCTACGACT ACCTGACCAA GCCGGTCGAC CTGAAACTGT TCCGCAGCGT CGTGGCGTCT
GCCCTCGGTC GGGCCGCGGC CAGCGGTCCG ACGGTGCAGC CCGATCAGTT GCCGTCCGAG
TCCGGGGCGG CGCGGCCCTC GCGCGCCGGC GTTGCCGCAC GCCCGGTGCC GACGATCGTG
ATCGGCCCGG CCGCTGCGGT GGTCCCTCCG GCCGGCGCGC TGGCGCGGAT GGCAGGCAAC
TCGGCCCCGA TGCAGCAGGT GCGTTCGCTG ATCGAGAAGG TCTCGCGCAG CATGGCACCG
GTGCTGGTGC ATGGCGAGTC CGGCACCGGC AAGGAGCTGG TCGCACGGGC GATCCACGAC
AGCGGCGTGC GCCGGAGTCA GCCCTTCATT GCGGTGAACT GCGGGGCGAT CCCTGAGCAG
TTGCTGGAAG CCGAGTTCTT CGGCTACCGA CGCGGTGCGT TCACGGGGGC GAACGAGGAC
CGCGACGGTT TCTTCCAGGC CGCGCGTGGC GGCACGCTGT TCCTCGACGA GATTGGTGAT
CTGCCGCTGT CGATGCAGAG CAAGCTGCTG CGCTCGATCC AGGAACGCTC GGTGCGGCCG
GTGGGCGCGA CGACGGAGAC GGCGCTGGAC GTTCGCATCG TCAGCGCGAC ACACAAGAAC
CTGGCGGCCG ACGTGCAGGC GGGGCGCTTC CGCCAGGACC TGTACTACCG GCTCAACGTG
ATCCAGATCC GGGTGCCGCC GCTGCGCGAG CGGCTCGAGG ATCTGCCGGC GATCTGCGAG
CGCGTGTTGG AGCGCATCGC CGCCGACGCC GGAGTCAGTC CGCCGCCGCG GCTGACGCGT
GACGCGCTCG CCTACTTGCT GCGCTACCCC TTCGGCGGCA ACGTCCGCGA ACTCGAGAAC
CTGCTGCACC GGGCCGTCGC GCTCTGCGAT GGCGATGTGA TCGATGTCGG CGACCTCGAT
CTGCCCGAGT CGGCGTTCAG CGACAGCGGG CGTGCCGAGC TGGCGGCGCT GCCAGCGGAT
GTGCCGCCGC CGAGCGCCGC CGAGTTCCCG GCGAGCGCGG CGCTGCCGAC GCCGTTGCCG
GACGATCTCG CCGCCTACCT CGACGGCGTC GAGCGCGACA TCCTCGTGCG TGCGCTGGAG
CGTTACCGCT TCAATCGCAC TGCTGCAGGC GCCAGCCTCG GTCTCTCGCT GCGACAGATG
CGCTATCGCA TGGCGCGGCT GGGGGTCATG GTCGCCGAGC ATGGCGTGGC CATCGGGCCG
GGTGCCGACG ACTCGGATGA CGAACTGCCG CCCGCCGGAT CGGGGCGGGC GTGA
 
Protein sequence
MSPASHFSLL VVDDEPDLRT LYELTLLREG YEIETAACVE DAWAQLADRT FSAVITDMRL 
PDGSGLDLLH RLEEAGRREK TIVITAYGSA ESAVEALKAG AYDYLTKPVD LKLFRSVVAS
ALGRAAASGP TVQPDQLPSE SGAARPSRAG VAARPVPTIV IGPAAAVVPP AGALARMAGN
SAPMQQVRSL IEKVSRSMAP VLVHGESGTG KELVARAIHD SGVRRSQPFI AVNCGAIPEQ
LLEAEFFGYR RGAFTGANED RDGFFQAARG GTLFLDEIGD LPLSMQSKLL RSIQERSVRP
VGATTETALD VRIVSATHKN LAADVQAGRF RQDLYYRLNV IQIRVPPLRE RLEDLPAICE
RVLERIAADA GVSPPPRLTR DALAYLLRYP FGGNVRELEN LLHRAVALCD GDVIDVGDLD
LPESAFSDSG RAELAALPAD VPPPSAAEFP ASAALPTPLP DDLAAYLDGV ERDILVRALE
RYRFNRTAAG ASLGLSLRQM RYRMARLGVM VAEHGVAIGP GADDSDDELP PAGSGRA