Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PP_1401 |
Symbol | dctD |
ID | 1041970 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida KT2440 |
Kingdom | Bacteria |
Replicon accession | NC_002947 |
Strand | - |
Start bp | 1595672 |
End bp | 1597006 |
Gene Length | 1335 bp |
Protein Length | 444 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 637144802 |
Product | two component, sigma54 specific, transcriptional regulator, Fis family |
Protein accession | NP_743560 |
Protein GI | 26988135 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTTGAATT CGGTGATCGT CGTCGATGAT GAAGCTAGTA TCCGCACTGC TGTCGAGCAA TGGCTGAGCC TGTCTGGCTT CAGCGTGGAG TTGTTCGCTC GCGCCGAAGC GTGCCTGGCA CACCTGCCGC AGCACTTCCC TGGGGTGATC ATCAGCGATG TGCGCATGCC GGGCATGGAT GGCCTGCAAT TGCTCGAACG CCTGCAGGCG AACGACCCCG ACCTGCCCGT AATTCTGCTG ACCGGTCACG GTGATGTACC GATGGCGGTA GAAGCCATGC GCAGCGGGGC CTATGACTTC CTGGAAAAAC CCTTCACGCC GCAAGACTTG CTGGGCAGCC TGCGCCGCGC CCTTGAAAAA CGCCAGCTGG TGCTTGAGAA CCGCCGGCTC CACGAGCAGG CCGACCTCAA GTCACGCCTG GAAGGCACGC TGCTGGGCAT GTCCCAGGGC CTGCAACAGC TGCGCCGGCA AGTGCTGGAC CTGGCCGGCC TGCCGGTGAA CGTGTTGATC CGCGGTGAAA CCGGCAGTGG CAAGGAGCGG GTGGCCCGCT GCCTGCACGA CTTCGGCCCC CGTGCCGCCA AGCCCTTTGT AGCCCTTAAC TGCGCGGCCA TCCCCGAGTC GCTGTTCGAG GCCGAACTGT TCGGCCATGA GAGCGGCGCC TTCACGGGCG CCCAGGGTAA ACGCATCGGC AAGCTGGAGT ATGCCAACGG TGGCACCGTG TTCCTCGACG AAATCGAGAG CATGCCCCTG GCCCAACAGG CCAAGCTGTT GCGGGTGATA CAGGAGCAGA AGTTGGAGCG CCTGGGGGCA AACCAGAGCA TCAGCGTCGA CCTGCGCATC ATTGCTGCGA CCAAGCCTGA CCTGCTCGAG GAGGCTCGTG CCGGGCGCTT CCGCGAAGAC CTGGCCTACC GCCTGAACGT CGCCGAATTG CGCCTGGCAC CGCTGCGCGA GCGGCGGGAG GACATTCCGC TGCTGTTCGA ACACTTTGCC CGTGCTGCCG GTGAAAAGCT TGGTCGCGCG GCCCCGCCGC TATCGGGTGC ACAGCTGGCG CAGCTGCTGT CACATGACTG GCCTGGCAAC GTGCGTGAAC TGGCCAATGC GGCGGAGCGG CATGCGTTGG GGCTGGGTTC GCCAAATATC GAGGTGGCAC CTGCCGGGCA GTCGCTGGGC GAGCAGATGG AAGCATTCGA GGCGCAATGC CTGCGTGCGG CCTTGCGTCA GCATGGGGGC GAGATCAAGT CGGTGATGGA GGCCTTGCAA CTGCCTCGGC GCACGCTTAA CGAGAAGATG CAACGGCATG GGCTGGTGCG CGAGGATTTT ATTGGGCAGG CATGA
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Protein sequence | MLNSVIVVDD EASIRTAVEQ WLSLSGFSVE LFARAEACLA HLPQHFPGVI ISDVRMPGMD GLQLLERLQA NDPDLPVILL TGHGDVPMAV EAMRSGAYDF LEKPFTPQDL LGSLRRALEK RQLVLENRRL HEQADLKSRL EGTLLGMSQG LQQLRRQVLD LAGLPVNVLI RGETGSGKER VARCLHDFGP RAAKPFVALN CAAIPESLFE AELFGHESGA FTGAQGKRIG KLEYANGGTV FLDEIESMPL AQQAKLLRVI QEQKLERLGA NQSISVDLRI IAATKPDLLE EARAGRFRED LAYRLNVAEL RLAPLRERRE DIPLLFEHFA RAAGEKLGRA APPLSGAQLA QLLSHDWPGN VRELANAAER HALGLGSPNI EVAPAGQSLG EQMEAFEAQC LRAALRQHGG EIKSVMEALQ LPRRTLNEKM QRHGLVREDF IGQA
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