Gene PP_1401 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPP_1401 
SymboldctD 
ID1041970 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida KT2440 
KingdomBacteria 
Replicon accessionNC_002947 
Strand
Start bp1595672 
End bp1597006 
Gene Length1335 bp 
Protein Length444 aa 
Translation table11 
GC content64% 
IMG OID637144802 
Producttwo component, sigma54 specific, transcriptional regulator, Fis family 
Protein accessionNP_743560 
Protein GI26988135 
COG category[T] Signal transduction mechanisms 
COG ID[COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTGAATT CGGTGATCGT CGTCGATGAT GAAGCTAGTA TCCGCACTGC TGTCGAGCAA 
TGGCTGAGCC TGTCTGGCTT CAGCGTGGAG TTGTTCGCTC GCGCCGAAGC GTGCCTGGCA
CACCTGCCGC AGCACTTCCC TGGGGTGATC ATCAGCGATG TGCGCATGCC GGGCATGGAT
GGCCTGCAAT TGCTCGAACG CCTGCAGGCG AACGACCCCG ACCTGCCCGT AATTCTGCTG
ACCGGTCACG GTGATGTACC GATGGCGGTA GAAGCCATGC GCAGCGGGGC CTATGACTTC
CTGGAAAAAC CCTTCACGCC GCAAGACTTG CTGGGCAGCC TGCGCCGCGC CCTTGAAAAA
CGCCAGCTGG TGCTTGAGAA CCGCCGGCTC CACGAGCAGG CCGACCTCAA GTCACGCCTG
GAAGGCACGC TGCTGGGCAT GTCCCAGGGC CTGCAACAGC TGCGCCGGCA AGTGCTGGAC
CTGGCCGGCC TGCCGGTGAA CGTGTTGATC CGCGGTGAAA CCGGCAGTGG CAAGGAGCGG
GTGGCCCGCT GCCTGCACGA CTTCGGCCCC CGTGCCGCCA AGCCCTTTGT AGCCCTTAAC
TGCGCGGCCA TCCCCGAGTC GCTGTTCGAG GCCGAACTGT TCGGCCATGA GAGCGGCGCC
TTCACGGGCG CCCAGGGTAA ACGCATCGGC AAGCTGGAGT ATGCCAACGG TGGCACCGTG
TTCCTCGACG AAATCGAGAG CATGCCCCTG GCCCAACAGG CCAAGCTGTT GCGGGTGATA
CAGGAGCAGA AGTTGGAGCG CCTGGGGGCA AACCAGAGCA TCAGCGTCGA CCTGCGCATC
ATTGCTGCGA CCAAGCCTGA CCTGCTCGAG GAGGCTCGTG CCGGGCGCTT CCGCGAAGAC
CTGGCCTACC GCCTGAACGT CGCCGAATTG CGCCTGGCAC CGCTGCGCGA GCGGCGGGAG
GACATTCCGC TGCTGTTCGA ACACTTTGCC CGTGCTGCCG GTGAAAAGCT TGGTCGCGCG
GCCCCGCCGC TATCGGGTGC ACAGCTGGCG CAGCTGCTGT CACATGACTG GCCTGGCAAC
GTGCGTGAAC TGGCCAATGC GGCGGAGCGG CATGCGTTGG GGCTGGGTTC GCCAAATATC
GAGGTGGCAC CTGCCGGGCA GTCGCTGGGC GAGCAGATGG AAGCATTCGA GGCGCAATGC
CTGCGTGCGG CCTTGCGTCA GCATGGGGGC GAGATCAAGT CGGTGATGGA GGCCTTGCAA
CTGCCTCGGC GCACGCTTAA CGAGAAGATG CAACGGCATG GGCTGGTGCG CGAGGATTTT
ATTGGGCAGG CATGA
 
Protein sequence
MLNSVIVVDD EASIRTAVEQ WLSLSGFSVE LFARAEACLA HLPQHFPGVI ISDVRMPGMD 
GLQLLERLQA NDPDLPVILL TGHGDVPMAV EAMRSGAYDF LEKPFTPQDL LGSLRRALEK
RQLVLENRRL HEQADLKSRL EGTLLGMSQG LQQLRRQVLD LAGLPVNVLI RGETGSGKER
VARCLHDFGP RAAKPFVALN CAAIPESLFE AELFGHESGA FTGAQGKRIG KLEYANGGTV
FLDEIESMPL AQQAKLLRVI QEQKLERLGA NQSISVDLRI IAATKPDLLE EARAGRFRED
LAYRLNVAEL RLAPLRERRE DIPLLFEHFA RAAGEKLGRA APPLSGAQLA QLLSHDWPGN
VRELANAAER HALGLGSPNI EVAPAGQSLG EQMEAFEAQC LRAALRQHGG EIKSVMEALQ
LPRRTLNEKM QRHGLVREDF IGQA