More than 300 homologs were found in PanDaTox collection
for query gene BBta_0652 on replicon NC_009485
Organism: Bradyrhizobium sp. BTAi1



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_009485  BBta_0652  two component LuxR family transcriptional regulator  100 
 
 		 305 aa  616  1e-175  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.0800453  normal  0.813173 
 
 
-
 
NC_007778  RPB_1250  two component LuxR family transcriptional regulator  75.4 
 
 		 309 aa  446  1.0000000000000001e-124  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.886948  normal  1 
 
 
-
 
NC_011004  Rpal_1441  two component transcriptional regulator, LuxR family  75.4 
 
 		 308 aa  438  9.999999999999999e-123  Rhodopseudomonas palustris TIE-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_007958  RPD_3866  response regulator receiver  74.43 
 
 		 309 aa  434  1e-121  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.370865  normal  1 
 
 
-
 
NC_010581  Bind_0974  two component LuxR family transcriptional regulator  57.43 
 
 		 309 aa  354  1e-96  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.883175  normal  0.426964 
 
 
-
 
NC_010511  M446_0591  two component LuxR family transcriptional regulator  60.62 
 
 		 301 aa  322  5e-87  Methylobacterium sp. 4-46  Bacteria  normal  0.477799  hitchhiker  0.00469436 
 
 
-
 
NC_009620  Smed_4179  response regulator receiver protein  53.54 
 
 		 309 aa  318  5e-86  Sinorhizobium medicae WSM419  Bacteria  normal  1  normal  0.15819 
 
 
-
 
NC_011369  Rleg2_3066  two component transcriptional regulator, LuxR family  53.67 
 
 		 305 aa  318  5e-86  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010725  Mpop_3574  two component transcriptional regulator, LuxR family  58.9 
 
 		 301 aa  315  7e-85  Methylobacterium populi BJ001  Bacteria  normal  0.0249095  normal  1 
 
 
-
 
NC_011989  Avi_3499  transcriptional regulator LuxR family  51.82 
 
 		 312 aa  311  1e-83  Agrobacterium vitis S4  Bacteria  normal  1  n/a   
 
 
-
 
NC_012850  Rleg_3321  two component transcriptional regulator, LuxR family  52.33 
 
 		 305 aa  310  2e-83  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  1  normal  0.536368 
 
 
-
 
NC_011666  Msil_2002  two component transcriptional regulator, LuxR family  51.16 
 
 		 306 aa  300  2e-80  Methylocella silvestris BL2  Bacteria  n/a    normal  1 
 
 
-
 
NC_010172  Mext_3383  response regulator receiver  56.85 
 
 		 300 aa  298  8e-80  Methylobacterium extorquens PA1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011757  Mchl_3692  two component transcriptional regulator, LuxR family  56.85 
 
 		 300 aa  298  1e-79  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.170876  normal  1 
 
 
-
 
NC_007912  Sde_2977  response regulator receiver domain-containing protein  48.36 
 
 		 303 aa  296  4e-79  Saccharophagus degradans 2-40  Bacteria  normal  1  normal  0.13601 
 
 
-
 
NC_008740  Maqu_3869  response regulator receiver protein  50.5 
 
 		 301 aa  292  4e-78  Marinobacter aquaeolei VT8  Bacteria  normal  1  n/a   
 
 
-
 
NC_009654  Mmwyl1_0962  response regulator receiver protein  52.16 
 
 		 304 aa  292  6e-78  Marinomonas sp. MWYL1  Bacteria  normal  0.512477  normal  1 
 
 
-
 
NC_010505  Mrad2831_5514  two component LuxR family transcriptional regulator  56.33 
 
 		 305 aa  290  2e-77  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  1  normal  0.211273 
 
 
-
 
NC_011138  MADE_00878  two-component response regulator  45.79 
 
 		 298 aa  263  2e-69  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  1  n/a   
 
 
-
 
NC_008709  Ping_2984  two component transcriptional regulator, LuxR family protein  47.44 
 
 		 295 aa  257  2e-67  Psychromonas ingrahamii 37  Bacteria  normal  0.43543  normal  0.546259 
 
 
-
 
NC_013422  Hneap_1587  two component transcriptional regulator, LuxR family  45.61 
 
 		 292 aa  256  4e-67  Halothiobacillus neapolitanus c2  Bacteria  normal  0.522901  n/a   
 
 
-
 
NC_008825  Mpe_A0671  two component LuxR family transcriptional regulator  45.6 
 
 		 333 aa  251  8.000000000000001e-66  Methylibium petroleiphilum PM1  Bacteria  normal  0.0205263  normal  1 
 
 
-
 
NC_008825  Mpe_A3585  two component LuxR family transcriptional regulator  48.43 
 
 		 306 aa  249  4e-65  Methylibium petroleiphilum PM1  Bacteria  normal  0.295986  normal  1 
 
 
-
 
NC_007948  Bpro_0562  two component LuxR family transcriptional regulator  46.48 
 
 		 297 aa  249  4e-65  Polaromonas sp. JS666  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010002  Daci_0218  two component LuxR family transcriptional regulator  44.81 
 
 		 339 aa  244  9e-64  Delftia acidovorans SPH-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_012791  Vapar_3147  two component transcriptional regulator, LuxR family  47.33 
 
 		 302 aa  244  9.999999999999999e-64  Variovorax paradoxus S110  Bacteria  normal  0.235206  n/a   
 
 
-
 
NC_007794  Saro_1665  two component LuxR family transcriptional regulator  43.3 
 
 		 307 aa  243  3e-63  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  1  n/a   
 
 
-
 
NC_007908  Rfer_3397  two component LuxR family transcriptional regulator  46.45 
 
 		 328 aa  241  7.999999999999999e-63  Rhodoferax ferrireducens T118  Bacteria  normal  1  n/a   
 
 
-
 
NC_007298  Daro_1445  two component LuxR family transcriptional regulator  44.88 
 
 		 308 aa  240  2e-62  Dechloromonas aromatica RCB  Bacteria  normal  0.446624  normal  1 
 
 
-
 
NC_007947  Mfla_1761  two component LuxR family transcriptional regulator  45.83 
 
 		 311 aa  238  1e-61  Methylobacillus flagellatus KT  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007948  Bpro_1354  two component LuxR family transcriptional regulator  45.06 
 
 		 349 aa  238  1e-61  Polaromonas sp. JS666  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010524  Lcho_1083  two component LuxR family transcriptional regulator  44.48 
 
 		 316 aa  235  7e-61  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  1 
 
 
-
 
NC_008781  Pnap_0979  response regulator receiver protein  43.17 
 
 		 336 aa  232  5e-60  Polaromonas naphthalenivorans CJ2  Bacteria  normal  1  normal  1 
 
 
-
 
NC_012791  Vapar_4238  two component transcriptional regulator, LuxR family  42.77 
 
 		 356 aa  229  5e-59  Variovorax paradoxus S110  Bacteria  normal  1  n/a   
 
 
-
 
NC_008786  Veis_1731  response regulator receiver protein  43.32 
 
 		 361 aa  228  1e-58  Verminephrobacter eiseniae EF01-2  Bacteria  normal  1  normal  0.319975 
 
 
-
 
NC_008752  Aave_3524  two component LuxR family transcriptional regulator  42.99 
 
 		 353 aa  226  5.0000000000000005e-58  Acidovorax citrulli AAC00-1  Bacteria  normal  0.406085  normal  0.428998 
 
 
-
 
NC_010515  Bcenmc03_5666  two component LuxR family transcriptional regulator  40.33 
 
 		 312 aa  218  1e-55  Burkholderia cenocepacia MC0-3  Bacteria  normal  1  normal  0.917296 
 
 
-
 
NC_008061  Bcen_3730  two component LuxR family transcriptional regulator  40.67 
 
 		 312 aa  216  4e-55  Burkholderia cenocepacia AU 1054  Bacteria  normal  1  n/a   
 
 
-
 
NC_008543  Bcen2424_4638  two component LuxR family transcriptional regulator  40.67 
 
 		 312 aa  216  4e-55  Burkholderia cenocepacia HI2424  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007952  Bxe_B1713  two component LuxR family transcriptional regulator  37.73 
 
 		 361 aa  214  1.9999999999999998e-54  Burkholderia xenovorans LB400  Bacteria  normal  0.310925  normal  1 
 
 
-
 
NC_010571  Oter_1720  two component LuxR family transcriptional regulator  37.71 
 
 		 301 aa  166  4e-40  Opitutus terrae PB90-1  Bacteria  normal  0.162572  normal  0.616267 
 
 
-
 
NC_004578  PSPTO_4080  DNA-binding response regulator, LuxR family  58.59 
 
 		 222 aa  164  1.0000000000000001e-39  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.542388  n/a   
 
 
-
 
NC_013440  Hoch_6548  response regulator receiver sensor signal transduction histidine kinase  48.3 
 
 		 397 aa  140  3e-32  Haliangium ochraceum DSM 14365  Bacteria  normal  1  normal  0.543575 
 
 
-
 
NC_011884  Cyan7425_3210  response regulator receiver modulated diguanylate cyclase  49.25 
 
 		 337 aa  138  8.999999999999999e-32  Cyanothece sp. PCC 7425  Bacteria  normal  0.32327  normal  0.712325 
 
 
-
 
NC_010814  Glov_1118  response regulator receiver sensor signal transduction histidine kinase  48.55 
 
 		 452 aa  137  3.0000000000000003e-31  Geobacter lovleyi SZ  Bacteria  hitchhiker  0.000972917  n/a   
 
 
-
 
NC_011884  Cyan7425_0790  multi-sensor signal transduction histidine kinase  48.41 
 
 		 566 aa  134  9.999999999999999e-31  Cyanothece sp. PCC 7425  Bacteria  normal  0.391268  normal  1 
 
 
-
 
NC_010625  Bphy_6559  multi-sensor signal transduction histidine kinase  56.52 
 
 		 541 aa  134  9.999999999999999e-31  Burkholderia phymatum STM815  Bacteria  normal  1  normal  0.59439 
 
 
-
 
NC_007413  Ava_2562  response regulator receiver Signal transduction histidine kinase  48.39 
 
 		 437 aa  134  3e-30  Anabaena variabilis ATCC 29413  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007413  Ava_2149  response regulator receiver Signal transduction histidine kinase  51.64 
 
 		 407 aa  132  6e-30  Anabaena variabilis ATCC 29413  Bacteria  normal  1  normal  0.142048 
 
 
-
 
NC_010627  Bphy_7700  multi-sensor signal transduction histidine kinase  54.24 
 
 		 541 aa  132  9e-30  Burkholderia phymatum STM815  Bacteria  normal  0.163324  normal  0.507763 
 
 
-
 
NC_014248  Aazo_4465  response regulator receiver sensor signal transduction histidine kinase  46.88 
 
 		 437 aa  130  2.0000000000000002e-29  'Nostoc azollae' 0708  Bacteria  normal  1  n/a   
 
 
-
 
NC_007413  Ava_4136  response regulator receiver Signal transduction histidine kinase  48.36 
 
 		 440 aa  130  3e-29  Anabaena variabilis ATCC 29413  Bacteria  decreased coverage  0.00000660181  hitchhiker  0.00876613 
 
 
-
 
NC_010571  Oter_0809  response regulator receiver sensor signal transduction histidine kinase  47.41 
 
 		 367 aa  129  4.0000000000000003e-29  Opitutus terrae PB90-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010676  Bphyt_6236  multi-sensor signal transduction histidine kinase  46.58 
 
 		 553 aa  126  5e-28  Burkholderia phytofirmans PsJN  Bacteria  normal  1  normal  0.914679 
 
 
-
 
NC_010681  Bphyt_2397  two component transcriptional regulator, AraC family  48.85 
 
 		 269 aa  123  3e-27  Burkholderia phytofirmans PsJN  Bacteria  normal  0.92999  normal  0.351016 
 
 
-
 
NC_013730  Slin_2507  two component, sigma54 specific, transcriptional regulator, Fis family  46.34 
 
 		 488 aa  123  4e-27  Spirosoma linguale DSM 74  Bacteria  normal  1  normal  0.182398 
 
 
-
 
NC_013440  Hoch_2175  response regulator receiver sensor signal transduction histidine kinase  50 
 
 		 395 aa  122  6e-27  Haliangium ochraceum DSM 14365  Bacteria  normal  0.924768  normal  0.400775 
 
 
-
 
NC_010551  BamMC406_1236  response regulator receiver sensor signal transduction histidine kinase  44.06 
 
 		 386 aa  122  7e-27  Burkholderia ambifaria MC40-6  Bacteria  normal  0.493129  normal  1 
 
 
-
 
NC_009012  Cthe_1826  response regulator receiver sensor signal transduction histidine kinase  38.65 
 
 		 363 aa  121  9.999999999999999e-27  Clostridium thermocellum ATCC 27405  Bacteria  normal  1  n/a   
 
 
-
 
NC_010623  Bphy_4530  response regulator receiver sensor signal transduction histidine kinase  44.06 
 
 		 386 aa  121  1.9999999999999998e-26  Burkholderia phymatum STM815  Bacteria  normal  1  normal  1 
 
 
-
 
NC_012918  GM21_3242  response regulator receiver sensor signal transduction histidine kinase  49.57 
 
 		 441 aa  120  3.9999999999999996e-26  Geobacter sp. M21  Bacteria  n/a    normal  1 
 
 
-
 
NC_011726  PCC8801_1350  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  44.7 
 
 		 715 aa  119  6e-26  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_011138  MADE_03429  two-component system response regulator (hybrid family) protein  46.92 
 
 		 358 aa  119  7e-26  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  1  n/a   
 
 
-
 
NC_013161  Cyan8802_1380  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  44.7 
 
 		 715 aa  119  7e-26  Cyanothece sp. PCC 8802  Bacteria  normal  0.923401  normal  1 
 
 
-
 
NC_009767  Rcas_3134  response regulator receiver protein  49.18 
 
 		 200 aa  119  9e-26  Roseiflexus castenholzii DSM 13941  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008312  Tery_4155  response regulator receiver sensor signal transduction histidine kinase  46.03 
 
 		 440 aa  118  9.999999999999999e-26  Trichodesmium erythraeum IMS101  Bacteria  normal  0.50715  normal  1 
 
 
-
 
NC_007413  Ava_2150  response regulator receiver Signal transduction histidine kinase  46.72 
 
 		 443 aa  117  1.9999999999999998e-25  Anabaena variabilis ATCC 29413  Bacteria  normal  1  normal  0.394463 
 
 
-
 
NC_009523  RoseRS_2347  response regulator receiver protein  50.85 
 
 		 202 aa  117  3e-25  Roseiflexus sp. RS-1  Bacteria  normal  0.56815  normal  1 
 
 
-
 
NC_014248  Aazo_4229  response regulator receiver sensor signal transduction histidine kinase  42.75 
 
 		 383 aa  115  7.999999999999999e-25  'Nostoc azollae' 0708  Bacteria  normal  0.599633  n/a   
 
 
-
 
NC_008392  Bamb_6368  two component AraC family transcriptional regulator  47.9 
 
 		 271 aa  115  7.999999999999999e-25  Burkholderia ambifaria AMMD  Bacteria  normal  0.434467  normal  1 
 
 
-
 
NC_010571  Oter_0959  response regulator receiver sensor signal transduction histidine kinase  46.55 
 
 		 372 aa  115  8.999999999999998e-25  Opitutus terrae PB90-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011146  Gbem_1018  response regulator receiver sensor signal transduction histidine kinase  46.96 
 
 		 441 aa  115  1.0000000000000001e-24  Geobacter bemidjiensis Bem  Bacteria  hitchhiker  0.00729938  n/a   
 
 
-
 
NC_011726  PCC8801_1139  response regulator receiver modulated diguanylate cyclase  32.17 
 
 		 308 aa  114  1.0000000000000001e-24  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013161  Cyan8802_1169  response regulator receiver modulated diguanylate cyclase  32.17 
 
 		 308 aa  114  1.0000000000000001e-24  Cyanothece sp. PCC 8802  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011726  PCC8801_2743  response regulator receiver sensor signal transduction histidine kinase  41.18 
 
 		 395 aa  115  1.0000000000000001e-24  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013161  Cyan8802_3359  response regulator receiver sensor signal transduction histidine kinase  41.18 
 
 		 395 aa  115  1.0000000000000001e-24  Cyanothece sp. PCC 8802  Bacteria  normal  0.361398  normal  1 
 
 
-
 
NC_010571  Oter_3856  response regulator receiver sensor signal transduction histidine kinase  41.09 
 
 		 378 aa  114  2.0000000000000002e-24  Opitutus terrae PB90-1  Bacteria  normal  1  normal  0.215089 
 
 
-
 
NC_009654  Mmwyl1_3382  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  41.98 
 
 		 594 aa  114  2.0000000000000002e-24  Marinomonas sp. MWYL1  Bacteria  normal  1  normal  0.371129 
 
 
-
 
NC_010557  BamMC406_6071  two component AraC family transcriptional regulator  47.06 
 
 		 271 aa  113  5e-24  Burkholderia ambifaria MC40-6  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009092  Shew_3199  response regulator receiver modulated metal dependent phosphohydrolase  46.55 
 
 		 339 aa  112  6e-24  Shewanella loihica PV-4  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009901  Spea_0629  response regulator receiver modulated metal dependent phosphohydrolase  44.83 
 
 		 339 aa  112  9e-24  Shewanella pealeana ATCC 700345  Bacteria  normal  1  n/a   
 
 
-
 
NC_011146  Gbem_1228  response regulator receiver modulated diguanylate cyclase  39.22 
 
 		 349 aa  111  1.0000000000000001e-23  Geobacter bemidjiensis Bem  Bacteria  normal  1  n/a   
 
 
-
 
NC_007509  Bcep18194_C7377  two component AraC family transcriptional regulator  46.72 
 
 		 278 aa  112  1.0000000000000001e-23  Burkholderia sp. 383  Bacteria  normal  0.0377301  normal  0.284562 
 
 
-
 
NC_008321  Shewmr4_0716  response regulator receiver modulated metal dependent phosphohydrolase  46.55 
 
 		 338 aa  111  1.0000000000000001e-23  Shewanella sp. MR-4  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008322  Shewmr7_3306  response regulator receiver modulated metal dependent phosphohydrolase  46.55 
 
 		 338 aa  111  1.0000000000000001e-23  Shewanella sp. MR-7  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010557  BamMC406_5929  two component AraC family transcriptional regulator  45.9 
 
 		 277 aa  111  1.0000000000000001e-23  Burkholderia ambifaria MC40-6  Bacteria  normal  0.473719  normal  1 
 
 
-
 
NC_008577  Shewana3_3418  response regulator receiver modulated metal dependent phosphohydrolase  46.55 
 
 		 338 aa  111  1.0000000000000001e-23  Shewanella sp. ANA-3  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008392  Bamb_6198  two component AraC family transcriptional regulator  45.08 
 
 		 277 aa  111  2.0000000000000002e-23  Burkholderia ambifaria AMMD  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011729  PCC7424_2188  response regulator receiver sensor signal transduction histidine kinase  40.52 
 
 		 384 aa  110  3e-23  Cyanothece sp. PCC 7424  Bacteria  n/a    hitchhiker  0.00677544 
 
 
-
 
NC_009438  Sputcn32_3141  response regulator receiver modulated metal dependent phosphohydrolase  45.69 
 
 		 338 aa  109  5e-23  Shewanella putrefaciens CN-32  Bacteria  normal  1  n/a   
 
 
-
 
NC_008700  Sama_2951  response regulator receiver protein  45.69 
 
 		 340 aa  109  5e-23  Shewanella amazonensis SB2B  Bacteria  normal  1  normal  0.129077 
 
 
-
 
NC_007796  Mhun_1941  response regulator receiver domain-containing protein  44.44 
 
 		 156 aa  108  9.000000000000001e-23  Methanospirillum hungatei JF-1  Archaea  normal  1  normal  1 
 
 
-
 
NC_004347  SO_0860  response regulator  44.83 
 
 		 339 aa  108  1e-22  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_011729  PCC7424_0984  response regulator receiver modulated diguanylate cyclase  44.35 
 
 		 353 aa  108  1e-22  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.194443 
 
 
-
 
NC_007520  Tcr_2179  response regulator receiver (CheY-like) modulated metal dependent phosphohydrolase  42.61 
 
 		 348 aa  107  2e-22  Thiomicrospira crunogena XCL-2  Bacteria  normal  0.378064  n/a   
 
 
-
 
NC_008062  Bcen_6528  two component AraC family transcriptional regulator  45.11 
 
 		 271 aa  107  2e-22  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.485144  n/a   
 
 
-
 
NC_008544  Bcen2424_6762  two component AraC family transcriptional regulator  45.11 
 
 		 271 aa  107  2e-22  Burkholderia cenocepacia HI2424  Bacteria  normal  1  normal  0.295507 
 
 
-
 
NC_009997  Sbal195_0871  response regulator receiver modulated metal dependent phosphohydrolase  43.97 
 
 		 338 aa  107  3e-22  Shewanella baltica OS195  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007908  Rfer_2262  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  35.26 
 
 		 853 aa  107  3e-22  Rhodoferax ferrireducens T118  Bacteria  normal  1  n/a   
 
 
-
 
NC_011138  MADE_01756  Response regulator CheB (receptor modification enzyme, protein-glutamate methylesterase)  31.62 
 
 		 337 aa  106  4e-22  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.844049  n/a   
 
 
-
 
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