More than 300 homologs were found in PanDaTox collection
for query gene Smed_4179 on replicon NC_009620
Organism: Sinorhizobium medicae WSM419



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009620  Smed_4179  response regulator receiver protein  100 
 
 
309 aa  627  1e-178  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.15819 
 
 
-
 
NC_011369  Rleg2_3066  two component transcriptional regulator, LuxR family  78.88 
 
 
305 aa  476  1e-133  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_3321  two component transcriptional regulator, LuxR family  77.23 
 
 
305 aa  466  9.999999999999999e-131  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.536368 
 
 
-
 
NC_011989  Avi_3499  transcriptional regulator LuxR family  70.61 
 
 
312 aa  422  1e-117  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_010581  Bind_0974  two component LuxR family transcriptional regulator  57 
 
 
309 aa  332  7.000000000000001e-90  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.883175  normal  0.426964 
 
 
-
 
NC_010511  M446_0591  two component LuxR family transcriptional regulator  56.35 
 
 
301 aa  328  6e-89  Methylobacterium sp. 4-46  Bacteria  normal  0.477799  hitchhiker  0.00469436 
 
 
-
 
NC_009485  BBta_0652  two component LuxR family transcriptional regulator  53.54 
 
 
305 aa  318  5e-86  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.0800453  normal  0.813173 
 
 
-
 
NC_011004  Rpal_1441  two component transcriptional regulator, LuxR family  55.4 
 
 
308 aa  315  7e-85  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_3866  response regulator receiver  55.4 
 
 
309 aa  313  1.9999999999999998e-84  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.370865  normal 
 
 
-
 
NC_007778  RPB_1250  two component LuxR family transcriptional regulator  54.36 
 
 
309 aa  311  7.999999999999999e-84  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.886948  normal 
 
 
-
 
NC_010725  Mpop_3574  two component transcriptional regulator, LuxR family  56.21 
 
 
301 aa  301  8.000000000000001e-81  Methylobacterium populi BJ001  Bacteria  normal  0.0249095  normal 
 
 
-
 
NC_010505  Mrad2831_5514  two component LuxR family transcriptional regulator  53.95 
 
 
305 aa  295  7e-79  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.211273 
 
 
-
 
NC_010172  Mext_3383  response regulator receiver  55.22 
 
 
300 aa  292  5e-78  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_3692  two component transcriptional regulator, LuxR family  55.22 
 
 
300 aa  291  7e-78  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.170876  normal 
 
 
-
 
NC_007912  Sde_2977  response regulator receiver domain-containing protein  46.84 
 
 
303 aa  283  3.0000000000000004e-75  Saccharophagus degradans 2-40  Bacteria  normal  normal  0.13601 
 
 
-
 
NC_011666  Msil_2002  two component transcriptional regulator, LuxR family  50.82 
 
 
306 aa  283  3.0000000000000004e-75  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_008740  Maqu_3869  response regulator receiver protein  47.99 
 
 
301 aa  280  2e-74  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_0962  response regulator receiver protein  48.5 
 
 
304 aa  270  2e-71  Marinomonas sp. MWYL1  Bacteria  normal  0.512477  normal 
 
 
-
 
NC_008825  Mpe_A0671  two component LuxR family transcriptional regulator  47.65 
 
 
333 aa  256  5e-67  Methylibium petroleiphilum PM1  Bacteria  normal  0.0205263  normal 
 
 
-
 
NC_011138  MADE_00878  two-component response regulator  42.33 
 
 
298 aa  250  2e-65  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_007794  Saro_1665  two component LuxR family transcriptional regulator  46.21 
 
 
307 aa  243  3e-63  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  n/a   
 
 
-
 
NC_008825  Mpe_A3585  two component LuxR family transcriptional regulator  46.62 
 
 
306 aa  242  5e-63  Methylibium petroleiphilum PM1  Bacteria  normal  0.295986  normal 
 
 
-
 
NC_008709  Ping_2984  two component transcriptional regulator, LuxR family protein  42.05 
 
 
295 aa  239  2.9999999999999997e-62  Psychromonas ingrahamii 37  Bacteria  normal  0.43543  normal  0.546259 
 
 
-
 
NC_007298  Daro_1445  two component LuxR family transcriptional regulator  46.33 
 
 
308 aa  238  1e-61  Dechloromonas aromatica RCB  Bacteria  normal  0.446624  normal 
 
 
-
 
NC_007948  Bpro_0562  two component LuxR family transcriptional regulator  44.44 
 
 
297 aa  238  1e-61  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_007948  Bpro_1354  two component LuxR family transcriptional regulator  44.86 
 
 
349 aa  238  1e-61  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_008781  Pnap_0979  response regulator receiver protein  44.24 
 
 
336 aa  233  2.0000000000000002e-60  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_3397  two component LuxR family transcriptional regulator  44.63 
 
 
328 aa  233  2.0000000000000002e-60  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_007947  Mfla_1761  two component LuxR family transcriptional regulator  46.34 
 
 
311 aa  233  4.0000000000000004e-60  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_013422  Hneap_1587  two component transcriptional regulator, LuxR family  41.44 
 
 
292 aa  233  4.0000000000000004e-60  Halothiobacillus neapolitanus c2  Bacteria  normal  0.522901  n/a   
 
 
-
 
NC_012791  Vapar_4238  two component transcriptional regulator, LuxR family  43.81 
 
 
356 aa  233  4.0000000000000004e-60  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_1083  two component LuxR family transcriptional regulator  45.54 
 
 
316 aa  232  6e-60  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_012791  Vapar_3147  two component transcriptional regulator, LuxR family  44.22 
 
 
302 aa  229  5e-59  Variovorax paradoxus S110  Bacteria  normal  0.235206  n/a   
 
 
-
 
NC_010002  Daci_0218  two component LuxR family transcriptional regulator  41.16 
 
 
339 aa  224  1e-57  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_008786  Veis_1731  response regulator receiver protein  41.79 
 
 
361 aa  223  3e-57  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.319975 
 
 
-
 
NC_010515  Bcenmc03_5666  two component LuxR family transcriptional regulator  40 
 
 
312 aa  223  4e-57  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.917296 
 
 
-
 
NC_008752  Aave_3524  two component LuxR family transcriptional regulator  44.16 
 
 
353 aa  223  4e-57  Acidovorax citrulli AAC00-1  Bacteria  normal  0.406085  normal  0.428998 
 
 
-
 
NC_008061  Bcen_3730  two component LuxR family transcriptional regulator  40 
 
 
312 aa  222  8e-57  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008543  Bcen2424_4638  two component LuxR family transcriptional regulator  40 
 
 
312 aa  222  8e-57  Burkholderia cenocepacia HI2424  Bacteria  normal  normal 
 
 
-
 
NC_007952  Bxe_B1713  two component LuxR family transcriptional regulator  35.52 
 
 
361 aa  207  1e-52  Burkholderia xenovorans LB400  Bacteria  normal  0.310925  normal 
 
 
-
 
NC_010571  Oter_1720  two component LuxR family transcriptional regulator  37.17 
 
 
301 aa  176  3e-43  Opitutus terrae PB90-1  Bacteria  normal  0.162572  normal  0.616267 
 
 
-
 
NC_004578  PSPTO_4080  DNA-binding response regulator, LuxR family  48.82 
 
 
222 aa  143  3e-33  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.542388  n/a   
 
 
-
 
NC_013440  Hoch_2175  response regulator receiver sensor signal transduction histidine kinase  54.33 
 
 
395 aa  140  1.9999999999999998e-32  Haliangium ochraceum DSM 14365  Bacteria  normal  0.924768  normal  0.400775 
 
 
-
 
NC_013440  Hoch_6548  response regulator receiver sensor signal transduction histidine kinase  48.03 
 
 
397 aa  138  1e-31  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.543575 
 
 
-
 
NC_011884  Cyan7425_3210  response regulator receiver modulated diguanylate cyclase  51.28 
 
 
337 aa  134  1.9999999999999998e-30  Cyanothece sp. PCC 7425  Bacteria  normal  0.32327  normal  0.712325 
 
 
-
 
NC_011884  Cyan7425_0790  multi-sensor signal transduction histidine kinase  47.58 
 
 
566 aa  129  8.000000000000001e-29  Cyanothece sp. PCC 7425  Bacteria  normal  0.391268  normal 
 
 
-
 
NC_007413  Ava_4136  response regulator receiver Signal transduction histidine kinase  50.43 
 
 
440 aa  128  1.0000000000000001e-28  Anabaena variabilis ATCC 29413  Bacteria  decreased coverage  0.00000660181  hitchhiker  0.00876613 
 
 
-
 
NC_009767  Rcas_3134  response regulator receiver protein  44.68 
 
 
200 aa  127  3e-28  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_2507  two component, sigma54 specific, transcriptional regulator, Fis family  45.59 
 
 
488 aa  127  3e-28  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.182398 
 
 
-
 
NC_007413  Ava_2562  response regulator receiver Signal transduction histidine kinase  50 
 
 
437 aa  125  1e-27  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_014248  Aazo_4465  response regulator receiver sensor signal transduction histidine kinase  47.29 
 
 
437 aa  124  1e-27  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_2149  response regulator receiver Signal transduction histidine kinase  48.76 
 
 
407 aa  124  2e-27  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.142048 
 
 
-
 
NC_010571  Oter_0809  response regulator receiver sensor signal transduction histidine kinase  47.54 
 
 
367 aa  124  2e-27  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
NC_010814  Glov_1118  response regulator receiver sensor signal transduction histidine kinase  46.09 
 
 
452 aa  124  3e-27  Geobacter lovleyi SZ  Bacteria  hitchhiker  0.000972917  n/a   
 
 
-
 
NC_010625  Bphy_6559  multi-sensor signal transduction histidine kinase  46.38 
 
 
541 aa  122  8e-27  Burkholderia phymatum STM815  Bacteria  normal  normal  0.59439 
 
 
-
 
NC_013216  Dtox_1577  response regulator receiver modulated diguanylate cyclase  42.86 
 
 
314 aa  121  9.999999999999999e-27  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_010676  Bphyt_6236  multi-sensor signal transduction histidine kinase  47.15 
 
 
553 aa  122  9.999999999999999e-27  Burkholderia phytofirmans PsJN  Bacteria  normal  normal  0.914679 
 
 
-
 
NC_010627  Bphy_7700  multi-sensor signal transduction histidine kinase  46.43 
 
 
541 aa  120  3.9999999999999996e-26  Burkholderia phymatum STM815  Bacteria  normal  0.163324  normal  0.507763 
 
 
-
 
NC_011729  PCC7424_0984  response regulator receiver modulated diguanylate cyclase  35.1 
 
 
353 aa  118  9.999999999999999e-26  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.194443 
 
 
-
 
NC_007517  Gmet_2999  response regulator receiver (CheY-like) modulated metal dependent phosphohydrolase  43.09 
 
 
361 aa  115  6.9999999999999995e-25  Geobacter metallireducens GS-15  Bacteria  normal  normal  0.669597 
 
 
-
 
NC_010814  Glov_3523  response regulator receiver modulated metal dependent phosphohydrolase  48.72 
 
 
363 aa  115  1.0000000000000001e-24  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_009012  Cthe_1826  response regulator receiver sensor signal transduction histidine kinase  39.55 
 
 
363 aa  115  1.0000000000000001e-24  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_010551  BamMC406_1236  response regulator receiver sensor signal transduction histidine kinase  43.22 
 
 
386 aa  114  2.0000000000000002e-24  Burkholderia ambifaria MC40-6  Bacteria  normal  0.493129  normal 
 
 
-
 
NC_010623  Bphy_4530  response regulator receiver sensor signal transduction histidine kinase  43.22 
 
 
386 aa  114  2.0000000000000002e-24  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_009523  RoseRS_2347  response regulator receiver protein  45.38 
 
 
202 aa  114  3e-24  Roseiflexus sp. RS-1  Bacteria  normal  0.56815  normal 
 
 
-
 
NC_014248  Aazo_4229  response regulator receiver sensor signal transduction histidine kinase  43.59 
 
 
383 aa  113  3e-24  'Nostoc azollae' 0708  Bacteria  normal  0.599633  n/a   
 
 
-
 
NC_008312  Tery_4155  response regulator receiver sensor signal transduction histidine kinase  45.38 
 
 
440 aa  113  4.0000000000000004e-24  Trichodesmium erythraeum IMS101  Bacteria  normal  0.50715  normal 
 
 
-
 
NC_007908  Rfer_2262  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  43.8 
 
 
853 aa  112  1.0000000000000001e-23  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_008576  Mmc1_3071  response regulator receiver protein  39.44 
 
 
390 aa  112  1.0000000000000001e-23  Magnetococcus sp. MC-1  Bacteria  normal  hitchhiker  0.000442652 
 
 
-
 
NC_012918  GM21_3242  response regulator receiver sensor signal transduction histidine kinase  42.24 
 
 
441 aa  111  2.0000000000000002e-23  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_011831  Cagg_1006  response regulator receiver modulated diguanylate cyclase  44.85 
 
 
312 aa  110  3e-23  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_008709  Ping_0978  response regulator receiver modulated diguanylate cyclase  27.84 
 
 
322 aa  110  3e-23  Psychromonas ingrahamii 37  Bacteria  normal  0.97362  decreased coverage  0.00116316 
 
 
-
 
NC_012560  Avin_29300  Response regulator  46.34 
 
 
310 aa  109  5e-23  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_0007  response regulator receiver modulated metal dependent phosphohydrolase  45.38 
 
 
379 aa  109  6e-23  Dechloromonas aromatica RCB  Bacteria  normal  0.829613  normal  0.0284762 
 
 
-
 
NC_011729  PCC7424_0178  response regulator receiver modulated diguanylate cyclase  37.96 
 
 
322 aa  109  6e-23  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.895619 
 
 
-
 
NC_009654  Mmwyl1_2382  response regulator receiver modulated metal dependent phosphohydrolase  40.56 
 
 
359 aa  109  7.000000000000001e-23  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_009092  Shew_3199  response regulator receiver modulated metal dependent phosphohydrolase  44.44 
 
 
339 aa  108  1e-22  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_011146  Gbem_1018  response regulator receiver sensor signal transduction histidine kinase  39.66 
 
 
441 aa  108  1e-22  Geobacter bemidjiensis Bem  Bacteria  hitchhiker  0.00729938  n/a   
 
 
-
 
NC_009523  RoseRS_0761  two component transcriptional regulator  40.91 
 
 
229 aa  108  1e-22  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.179681 
 
 
-
 
NC_007413  Ava_2150  response regulator receiver Signal transduction histidine kinase  46.55 
 
 
443 aa  107  2e-22  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.394463 
 
 
-
 
NC_009767  Rcas_4445  two component transcriptional regulator  40.91 
 
 
229 aa  107  2e-22  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.14031 
 
 
-
 
NC_007520  Tcr_2179  response regulator receiver (CheY-like) modulated metal dependent phosphohydrolase  40.65 
 
 
348 aa  107  2e-22  Thiomicrospira crunogena XCL-2  Bacteria  normal  0.378064  n/a   
 
 
-
 
NC_007796  Mhun_1941  response regulator receiver domain-containing protein  44.92 
 
 
156 aa  107  2e-22  Methanospirillum hungatei JF-1  Archaea  normal  normal 
 
 
-
 
NC_013173  Dbac_2998  response regulator receiver protein  42.74 
 
 
377 aa  107  3e-22  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_013525  Tter_0789  response regulator receiver protein  29.1 
 
 
278 aa  107  3e-22  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_013161  Cyan8802_3359  response regulator receiver sensor signal transduction histidine kinase  40.5 
 
 
395 aa  106  4e-22  Cyanothece sp. PCC 8802  Bacteria  normal  0.361398  normal 
 
 
-
 
NC_011726  PCC8801_2743  response regulator receiver sensor signal transduction histidine kinase  40.5 
 
 
395 aa  106  4e-22  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_011146  Gbem_1228  response regulator receiver modulated diguanylate cyclase  40.8 
 
 
349 aa  106  5e-22  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_011138  MADE_03429  two-component system response regulator (hybrid family) protein  30.08 
 
 
358 aa  106  5e-22  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_3274  response regulator receiver sensor signal transduction histidine kinase  40.65 
 
 
383 aa  106  5e-22  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_011312  VSAL_I2575  chitin degradation sensor protein  40 
 
 
1127 aa  106  5e-22  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_008576  Mmc1_3072  response regulator receiver modulated metal dependent phosphohydrolase  43.22 
 
 
353 aa  106  5e-22  Magnetococcus sp. MC-1  Bacteria  normal  hitchhiker  0.000480818 
 
 
-
 
NC_012918  GM21_0975  response regulator receiver sensor signal transduction histidine kinase  40.65 
 
 
383 aa  106  6e-22  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_010571  Oter_0959  response regulator receiver sensor signal transduction histidine kinase  41.88 
 
 
372 aa  106  6e-22  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
NC_011726  PCC8801_1139  response regulator receiver modulated diguanylate cyclase  37.29 
 
 
308 aa  105  7e-22  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013161  Cyan8802_1169  response regulator receiver modulated diguanylate cyclase  37.29 
 
 
308 aa  105  7e-22  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_008687  Pden_3311  response regulator receiver protein  29.64 
 
 
321 aa  105  7e-22  Paracoccus denitrificans PD1222  Bacteria  normal  normal  0.479786 
 
 
-
 
NC_010681  Bphyt_2397  two component transcriptional regulator, AraC family  42.4 
 
 
269 aa  105  9e-22  Burkholderia phytofirmans PsJN  Bacteria  normal  0.92999  normal  0.351016 
 
 
-
 
NC_010571  Oter_3856  response regulator receiver sensor signal transduction histidine kinase  40 
 
 
378 aa  105  1e-21  Opitutus terrae PB90-1  Bacteria  normal  normal  0.215089 
 
 
-
 
NC_010571  Oter_3794  response regulator receiver sensor signal transduction histidine kinase  39.84 
 
 
376 aa  105  1e-21  Opitutus terrae PB90-1  Bacteria  normal  0.0277983  normal  0.543799 
 
 
-
 
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