More than 300 homologs were found in PanDaTox collection
for query gene Rpal_1441 on replicon NC_011004
Organism: Rhodopseudomonas palustris TIE-1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011004  Rpal_1441  two component transcriptional regulator, LuxR family  100 
 
 
308 aa  622  1e-177  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_1250  two component LuxR family transcriptional regulator  90.26 
 
 
309 aa  552  1e-156  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.886948  normal 
 
 
-
 
NC_007958  RPD_3866  response regulator receiver  89.61 
 
 
309 aa  546  1e-154  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.370865  normal 
 
 
-
 
NC_009485  BBta_0652  two component LuxR family transcriptional regulator  75.4 
 
 
305 aa  455  1e-127  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.0800453  normal  0.813173 
 
 
-
 
NC_010581  Bind_0974  two component LuxR family transcriptional regulator  59.02 
 
 
309 aa  352  5e-96  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.883175  normal  0.426964 
 
 
-
 
NC_009620  Smed_4179  response regulator receiver protein  55.07 
 
 
309 aa  320  1.9999999999999998e-86  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.15819 
 
 
-
 
NC_010725  Mpop_3574  two component transcriptional regulator, LuxR family  60 
 
 
301 aa  318  7e-86  Methylobacterium populi BJ001  Bacteria  normal  0.0249095  normal 
 
 
-
 
NC_010511  M446_0591  two component LuxR family transcriptional regulator  57.33 
 
 
301 aa  315  6e-85  Methylobacterium sp. 4-46  Bacteria  normal  0.477799  hitchhiker  0.00469436 
 
 
-
 
NC_011757  Mchl_3692  two component transcriptional regulator, LuxR family  59.47 
 
 
300 aa  311  1e-83  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.170876  normal 
 
 
-
 
NC_010172  Mext_3383  response regulator receiver  59.47 
 
 
300 aa  311  1e-83  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_011369  Rleg2_3066  two component transcriptional regulator, LuxR family  54.05 
 
 
305 aa  310  2.9999999999999997e-83  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_3321  two component transcriptional regulator, LuxR family  53.87 
 
 
305 aa  308  8e-83  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.536368 
 
 
-
 
NC_010505  Mrad2831_5514  two component LuxR family transcriptional regulator  59.32 
 
 
305 aa  305  4.0000000000000004e-82  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.211273 
 
 
-
 
NC_011989  Avi_3499  transcriptional regulator LuxR family  52.98 
 
 
312 aa  302  6.000000000000001e-81  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_011666  Msil_2002  two component transcriptional regulator, LuxR family  51.61 
 
 
306 aa  297  1e-79  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_008740  Maqu_3869  response regulator receiver protein  50.84 
 
 
301 aa  289  4e-77  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_007912  Sde_2977  response regulator receiver domain-containing protein  48.4 
 
 
303 aa  287  2e-76  Saccharophagus degradans 2-40  Bacteria  normal  normal  0.13601 
 
 
-
 
NC_009654  Mmwyl1_0962  response regulator receiver protein  52.35 
 
 
304 aa  285  5e-76  Marinomonas sp. MWYL1  Bacteria  normal  0.512477  normal 
 
 
-
 
NC_011138  MADE_00878  two-component response regulator  45.25 
 
 
298 aa  259  5.0000000000000005e-68  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_008709  Ping_2984  two component transcriptional regulator, LuxR family protein  46.42 
 
 
295 aa  257  2e-67  Psychromonas ingrahamii 37  Bacteria  normal  0.43543  normal  0.546259 
 
 
-
 
NC_008825  Mpe_A3585  two component LuxR family transcriptional regulator  49.66 
 
 
306 aa  256  5e-67  Methylibium petroleiphilum PM1  Bacteria  normal  0.295986  normal 
 
 
-
 
NC_010524  Lcho_1083  two component LuxR family transcriptional regulator  48.04 
 
 
316 aa  252  7e-66  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_007948  Bpro_0562  two component LuxR family transcriptional regulator  47.96 
 
 
297 aa  251  1e-65  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_013422  Hneap_1587  two component transcriptional regulator, LuxR family  45.03 
 
 
292 aa  249  5e-65  Halothiobacillus neapolitanus c2  Bacteria  normal  0.522901  n/a   
 
 
-
 
NC_008825  Mpe_A0671  two component LuxR family transcriptional regulator  45.6 
 
 
333 aa  248  1e-64  Methylibium petroleiphilum PM1  Bacteria  normal  0.0205263  normal 
 
 
-
 
NC_012791  Vapar_3147  two component transcriptional regulator, LuxR family  46.08 
 
 
302 aa  243  3.9999999999999997e-63  Variovorax paradoxus S110  Bacteria  normal  0.235206  n/a   
 
 
-
 
NC_010002  Daci_0218  two component LuxR family transcriptional regulator  45.45 
 
 
339 aa  240  2e-62  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_007794  Saro_1665  two component LuxR family transcriptional regulator  42.24 
 
 
307 aa  240  2e-62  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  n/a   
 
 
-
 
NC_008781  Pnap_0979  response regulator receiver protein  44.79 
 
 
336 aa  238  8e-62  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_3397  two component LuxR family transcriptional regulator  45.86 
 
 
328 aa  238  9e-62  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_007948  Bpro_1354  two component LuxR family transcriptional regulator  44.41 
 
 
349 aa  237  2e-61  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_007298  Daro_1445  two component LuxR family transcriptional regulator  45.57 
 
 
308 aa  230  2e-59  Dechloromonas aromatica RCB  Bacteria  normal  0.446624  normal 
 
 
-
 
NC_008786  Veis_1731  response regulator receiver protein  45.35 
 
 
361 aa  230  2e-59  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.319975 
 
 
-
 
NC_007947  Mfla_1761  two component LuxR family transcriptional regulator  45.7 
 
 
311 aa  230  3e-59  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_008752  Aave_3524  two component LuxR family transcriptional regulator  45.4 
 
 
353 aa  224  1e-57  Acidovorax citrulli AAC00-1  Bacteria  normal  0.406085  normal  0.428998 
 
 
-
 
NC_012791  Vapar_4238  two component transcriptional regulator, LuxR family  42.01 
 
 
356 aa  223  3e-57  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_010515  Bcenmc03_5666  two component LuxR family transcriptional regulator  42.21 
 
 
312 aa  216  4e-55  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.917296 
 
 
-
 
NC_008061  Bcen_3730  two component LuxR family transcriptional regulator  41.37 
 
 
312 aa  214  9.999999999999999e-55  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008543  Bcen2424_4638  two component LuxR family transcriptional regulator  41.37 
 
 
312 aa  214  9.999999999999999e-55  Burkholderia cenocepacia HI2424  Bacteria  normal  normal 
 
 
-
 
NC_007952  Bxe_B1713  two component LuxR family transcriptional regulator  39.23 
 
 
361 aa  210  2e-53  Burkholderia xenovorans LB400  Bacteria  normal  0.310925  normal 
 
 
-
 
NC_010571  Oter_1720  two component LuxR family transcriptional regulator  36.45 
 
 
301 aa  166  6.9999999999999995e-40  Opitutus terrae PB90-1  Bacteria  normal  0.162572  normal  0.616267 
 
 
-
 
NC_004578  PSPTO_4080  DNA-binding response regulator, LuxR family  56.92 
 
 
222 aa  164  2.0000000000000002e-39  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.542388  n/a   
 
 
-
 
NC_007413  Ava_2149  response regulator receiver Signal transduction histidine kinase  54.31 
 
 
407 aa  136  5e-31  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.142048 
 
 
-
 
NC_011884  Cyan7425_3210  response regulator receiver modulated diguanylate cyclase  51.22 
 
 
337 aa  134  1.9999999999999998e-30  Cyanothece sp. PCC 7425  Bacteria  normal  0.32327  normal  0.712325 
 
 
-
 
NC_013440  Hoch_6548  response regulator receiver sensor signal transduction histidine kinase  48.18 
 
 
397 aa  133  3.9999999999999996e-30  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.543575 
 
 
-
 
NC_007413  Ava_2562  response regulator receiver Signal transduction histidine kinase  47.58 
 
 
437 aa  132  5e-30  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_010571  Oter_0809  response regulator receiver sensor signal transduction histidine kinase  48.15 
 
 
367 aa  132  6e-30  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
NC_010625  Bphy_6559  multi-sensor signal transduction histidine kinase  55.65 
 
 
541 aa  131  2.0000000000000002e-29  Burkholderia phymatum STM815  Bacteria  normal  normal  0.59439 
 
 
-
 
NC_010627  Bphy_7700  multi-sensor signal transduction histidine kinase  54.24 
 
 
541 aa  130  4.0000000000000003e-29  Burkholderia phymatum STM815  Bacteria  normal  0.163324  normal  0.507763 
 
 
-
 
NC_013730  Slin_2507  two component, sigma54 specific, transcriptional regulator, Fis family  49.59 
 
 
488 aa  129  6e-29  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.182398 
 
 
-
 
NC_014248  Aazo_4465  response regulator receiver sensor signal transduction histidine kinase  46.15 
 
 
437 aa  129  7.000000000000001e-29  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_011884  Cyan7425_0790  multi-sensor signal transduction histidine kinase  46.83 
 
 
566 aa  129  7.000000000000001e-29  Cyanothece sp. PCC 7425  Bacteria  normal  0.391268  normal 
 
 
-
 
NC_010814  Glov_1118  response regulator receiver sensor signal transduction histidine kinase  46.62 
 
 
452 aa  128  1.0000000000000001e-28  Geobacter lovleyi SZ  Bacteria  hitchhiker  0.000972917  n/a   
 
 
-
 
NC_012918  GM21_3242  response regulator receiver sensor signal transduction histidine kinase  37.73 
 
 
441 aa  127  2.0000000000000002e-28  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_007413  Ava_4136  response regulator receiver Signal transduction histidine kinase  49.57 
 
 
440 aa  125  1e-27  Anabaena variabilis ATCC 29413  Bacteria  decreased coverage  0.00000660181  hitchhiker  0.00876613 
 
 
-
 
NC_013440  Hoch_2175  response regulator receiver sensor signal transduction histidine kinase  51.24 
 
 
395 aa  125  1e-27  Haliangium ochraceum DSM 14365  Bacteria  normal  0.924768  normal  0.400775 
 
 
-
 
NC_010551  BamMC406_1236  response regulator receiver sensor signal transduction histidine kinase  40 
 
 
386 aa  122  6e-27  Burkholderia ambifaria MC40-6  Bacteria  normal  0.493129  normal 
 
 
-
 
NC_009012  Cthe_1826  response regulator receiver sensor signal transduction histidine kinase  46.09 
 
 
363 aa  122  9.999999999999999e-27  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_2150  response regulator receiver Signal transduction histidine kinase  49.57 
 
 
443 aa  121  9.999999999999999e-27  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.394463 
 
 
-
 
NC_010623  Bphy_4530  response regulator receiver sensor signal transduction histidine kinase  40 
 
 
386 aa  122  9.999999999999999e-27  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_010681  Bphyt_2397  two component transcriptional regulator, AraC family  35.77 
 
 
269 aa  121  9.999999999999999e-27  Burkholderia phytofirmans PsJN  Bacteria  normal  0.92999  normal  0.351016 
 
 
-
 
NC_011138  MADE_03429  two-component system response regulator (hybrid family) protein  47.41 
 
 
358 aa  121  9.999999999999999e-27  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_1018  response regulator receiver sensor signal transduction histidine kinase  36.36 
 
 
441 aa  121  1.9999999999999998e-26  Geobacter bemidjiensis Bem  Bacteria  hitchhiker  0.00729938  n/a   
 
 
-
 
NC_009767  Rcas_3134  response regulator receiver protein  50.42 
 
 
200 aa  120  3e-26  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_010676  Bphyt_6236  multi-sensor signal transduction histidine kinase  45.21 
 
 
553 aa  120  3e-26  Burkholderia phytofirmans PsJN  Bacteria  normal  normal  0.914679 
 
 
-
 
NC_008392  Bamb_6368  two component AraC family transcriptional regulator  34.78 
 
 
271 aa  119  7e-26  Burkholderia ambifaria AMMD  Bacteria  normal  0.434467  normal 
 
 
-
 
NC_014248  Aazo_4229  response regulator receiver sensor signal transduction histidine kinase  47.83 
 
 
383 aa  118  9.999999999999999e-26  'Nostoc azollae' 0708  Bacteria  normal  0.599633  n/a   
 
 
-
 
NC_010557  BamMC406_6071  two component AraC family transcriptional regulator  34.25 
 
 
271 aa  117  3e-25  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_010571  Oter_0959  response regulator receiver sensor signal transduction histidine kinase  47.83 
 
 
372 aa  116  3.9999999999999997e-25  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
NC_008312  Tery_4155  response regulator receiver sensor signal transduction histidine kinase  47.46 
 
 
440 aa  116  3.9999999999999997e-25  Trichodesmium erythraeum IMS101  Bacteria  normal  0.50715  normal 
 
 
-
 
NC_009523  RoseRS_2347  response regulator receiver protein  49.58 
 
 
202 aa  116  5e-25  Roseiflexus sp. RS-1  Bacteria  normal  0.56815  normal 
 
 
-
 
NC_013216  Dtox_1577  response regulator receiver modulated diguanylate cyclase  43.97 
 
 
314 aa  115  6.9999999999999995e-25  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_011146  Gbem_1228  response regulator receiver modulated diguanylate cyclase  46.4 
 
 
349 aa  115  6.9999999999999995e-25  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_007509  Bcep18194_C7377  two component AraC family transcriptional regulator  47.54 
 
 
278 aa  115  1.0000000000000001e-24  Burkholderia sp. 383  Bacteria  normal  0.0377301  normal  0.284562 
 
 
-
 
NC_010571  Oter_3856  response regulator receiver sensor signal transduction histidine kinase  41.61 
 
 
378 aa  115  1.0000000000000001e-24  Opitutus terrae PB90-1  Bacteria  normal  normal  0.215089 
 
 
-
 
NC_013161  Cyan8802_1380  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  43.9 
 
 
715 aa  114  2.0000000000000002e-24  Cyanothece sp. PCC 8802  Bacteria  normal  0.923401  normal 
 
 
-
 
NC_007796  Mhun_1941  response regulator receiver domain-containing protein  47.01 
 
 
156 aa  114  2.0000000000000002e-24  Methanospirillum hungatei JF-1  Archaea  normal  normal 
 
 
-
 
NC_011726  PCC8801_1350  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  43.9 
 
 
715 aa  114  2.0000000000000002e-24  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_008062  Bcen_6528  two component AraC family transcriptional regulator  33.46 
 
 
271 aa  114  2.0000000000000002e-24  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.485144  n/a   
 
 
-
 
NC_010557  BamMC406_5929  two component AraC family transcriptional regulator  45.9 
 
 
277 aa  114  2.0000000000000002e-24  Burkholderia ambifaria MC40-6  Bacteria  normal  0.473719  normal 
 
 
-
 
NC_008544  Bcen2424_6762  two component AraC family transcriptional regulator  33.46 
 
 
271 aa  114  2.0000000000000002e-24  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.295507 
 
 
-
 
NC_009654  Mmwyl1_3382  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  41.67 
 
 
594 aa  114  3e-24  Marinomonas sp. MWYL1  Bacteria  normal  normal  0.371129 
 
 
-
 
NC_008392  Bamb_6198  two component AraC family transcriptional regulator  45.08 
 
 
277 aa  114  3e-24  Burkholderia ambifaria AMMD  Bacteria  normal  normal 
 
 
-
 
NC_008687  Pden_3311  response regulator receiver protein  33.33 
 
 
321 aa  114  3e-24  Paracoccus denitrificans PD1222  Bacteria  normal  normal  0.479786 
 
 
-
 
NC_009901  Spea_0629  response regulator receiver modulated metal dependent phosphohydrolase  46.09 
 
 
339 aa  112  7.000000000000001e-24  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_010512  Bcenmc03_6350  two component AraC family transcriptional regulator  33.73 
 
 
271 aa  112  8.000000000000001e-24  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.787195  normal  0.900493 
 
 
-
 
NC_007509  Bcep18194_C7173  two component AraC family transcriptional regulator  32.68 
 
 
268 aa  112  1.0000000000000001e-23  Burkholderia sp. 383  Bacteria  normal  normal  0.495812 
 
 
-
 
NC_008321  Shewmr4_0716  response regulator receiver modulated metal dependent phosphohydrolase  47.83 
 
 
338 aa  111  1.0000000000000001e-23  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_3306  response regulator receiver modulated metal dependent phosphohydrolase  47.83 
 
 
338 aa  111  1.0000000000000001e-23  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_011769  DvMF_1097  response regulator receiver modulated metal dependent phosphohydrolase  47.86 
 
 
391 aa  112  1.0000000000000001e-23  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.151318 
 
 
-
 
NC_008577  Shewana3_3418  response regulator receiver modulated metal dependent phosphohydrolase  47.83 
 
 
338 aa  111  1.0000000000000001e-23  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_014248  Aazo_1477  response regulator receiver modulated diguanylate cyclase  41.88 
 
 
317 aa  111  2.0000000000000002e-23  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_011726  PCC8801_2743  response regulator receiver sensor signal transduction histidine kinase  45.38 
 
 
395 aa  111  2.0000000000000002e-23  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_009092  Shew_3199  response regulator receiver modulated metal dependent phosphohydrolase  46.55 
 
 
339 aa  111  2.0000000000000002e-23  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_013161  Cyan8802_3359  response regulator receiver sensor signal transduction histidine kinase  45.38 
 
 
395 aa  111  2.0000000000000002e-23  Cyanothece sp. PCC 8802  Bacteria  normal  0.361398  normal 
 
 
-
 
NC_011726  PCC8801_1139  response regulator receiver modulated diguanylate cyclase  36.43 
 
 
308 aa  110  3e-23  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013161  Cyan8802_1169  response regulator receiver modulated diguanylate cyclase  36.43 
 
 
308 aa  110  3e-23  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_0124  response regulator receiver Signal transduction histidine kinase  42.28 
 
 
470 aa  110  4.0000000000000004e-23  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_009997  Sbal195_0871  response regulator receiver modulated metal dependent phosphohydrolase  46.96 
 
 
338 aa  110  4.0000000000000004e-23  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_009052  Sbal_3504  response regulator receiver modulated metal dependent phosphohydrolase  46.96 
 
 
338 aa  110  4.0000000000000004e-23  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
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