More than 300 homologs were found in PanDaTox collection
for query gene Bpro_1354 on replicon NC_007948
Organism: Polaromonas sp. JS666



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007948  Bpro_1354  two component LuxR family transcriptional regulator  100 
 
 
349 aa  707    Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_008781  Pnap_0979  response regulator receiver protein  84.5 
 
 
336 aa  576  1.0000000000000001e-163  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_3397  two component LuxR family transcriptional regulator  76.25 
 
 
328 aa  502  1e-141  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_4238  two component transcriptional regulator, LuxR family  72.29 
 
 
356 aa  479  1e-134  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_008752  Aave_3524  two component LuxR family transcriptional regulator  71.3 
 
 
353 aa  462  1e-129  Acidovorax citrulli AAC00-1  Bacteria  normal  0.406085  normal  0.428998 
 
 
-
 
NC_008786  Veis_1731  response regulator receiver protein  68.27 
 
 
361 aa  438  9.999999999999999e-123  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.319975 
 
 
-
 
NC_008825  Mpe_A0671  two component LuxR family transcriptional regulator  61.85 
 
 
333 aa  375  1e-103  Methylibium petroleiphilum PM1  Bacteria  normal  0.0205263  normal 
 
 
-
 
NC_010524  Lcho_1083  two component LuxR family transcriptional regulator  57.1 
 
 
316 aa  355  7.999999999999999e-97  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_007298  Daro_1445  two component LuxR family transcriptional regulator  57.28 
 
 
308 aa  347  2e-94  Dechloromonas aromatica RCB  Bacteria  normal  0.446624  normal 
 
 
-
 
NC_007947  Mfla_1761  two component LuxR family transcriptional regulator  56.88 
 
 
311 aa  330  3e-89  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_0652  two component LuxR family transcriptional regulator  45.37 
 
 
305 aa  243  5e-63  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.0800453  normal  0.813173 
 
 
-
 
NC_009620  Smed_4179  response regulator receiver protein  44.86 
 
 
309 aa  240  2.9999999999999997e-62  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.15819 
 
 
-
 
NC_010581  Bind_0974  two component LuxR family transcriptional regulator  45.59 
 
 
309 aa  236  4e-61  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.883175  normal  0.426964 
 
 
-
 
NC_008825  Mpe_A3585  two component LuxR family transcriptional regulator  45.17 
 
 
306 aa  235  1.0000000000000001e-60  Methylibium petroleiphilum PM1  Bacteria  normal  0.295986  normal 
 
 
-
 
NC_011369  Rleg2_3066  two component transcriptional regulator, LuxR family  45 
 
 
305 aa  232  8.000000000000001e-60  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_0591  two component LuxR family transcriptional regulator  46.08 
 
 
301 aa  230  2e-59  Methylobacterium sp. 4-46  Bacteria  normal  0.477799  hitchhiker  0.00469436 
 
 
-
 
NC_013422  Hneap_1587  two component transcriptional regulator, LuxR family  43.99 
 
 
292 aa  230  3e-59  Halothiobacillus neapolitanus c2  Bacteria  normal  0.522901  n/a   
 
 
-
 
NC_007958  RPD_3866  response regulator receiver  46.23 
 
 
309 aa  229  4e-59  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.370865  normal 
 
 
-
 
NC_007778  RPB_1250  two component LuxR family transcriptional regulator  44.07 
 
 
309 aa  228  1e-58  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.886948  normal 
 
 
-
 
NC_010725  Mpop_3574  two component transcriptional regulator, LuxR family  45.12 
 
 
301 aa  225  9e-58  Methylobacterium populi BJ001  Bacteria  normal  0.0249095  normal 
 
 
-
 
NC_011004  Rpal_1441  two component transcriptional regulator, LuxR family  43.73 
 
 
308 aa  225  9e-58  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_0962  response regulator receiver protein  42.42 
 
 
304 aa  224  2e-57  Marinomonas sp. MWYL1  Bacteria  normal  0.512477  normal 
 
 
-
 
NC_007952  Bxe_B1713  two component LuxR family transcriptional regulator  41.76 
 
 
361 aa  221  9.999999999999999e-57  Burkholderia xenovorans LB400  Bacteria  normal  0.310925  normal 
 
 
-
 
NC_012850  Rleg_3321  two component transcriptional regulator, LuxR family  43.26 
 
 
305 aa  221  1.9999999999999999e-56  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.536368 
 
 
-
 
NC_011757  Mchl_3692  two component transcriptional regulator, LuxR family  43.07 
 
 
300 aa  220  3e-56  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.170876  normal 
 
 
-
 
NC_010172  Mext_3383  response regulator receiver  42.77 
 
 
300 aa  219  3.9999999999999997e-56  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_007912  Sde_2977  response regulator receiver domain-containing protein  41.88 
 
 
303 aa  219  7.999999999999999e-56  Saccharophagus degradans 2-40  Bacteria  normal  normal  0.13601 
 
 
-
 
NC_011666  Msil_2002  two component transcriptional regulator, LuxR family  41.3 
 
 
306 aa  217  2e-55  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_011989  Avi_3499  transcriptional regulator LuxR family  42.67 
 
 
312 aa  216  4e-55  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_0218  two component LuxR family transcriptional regulator  40.92 
 
 
339 aa  212  7.999999999999999e-54  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_010515  Bcenmc03_5666  two component LuxR family transcriptional regulator  40.62 
 
 
312 aa  211  1e-53  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.917296 
 
 
-
 
NC_008740  Maqu_3869  response regulator receiver protein  42.59 
 
 
301 aa  209  5e-53  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_007948  Bpro_0562  two component LuxR family transcriptional regulator  41.21 
 
 
297 aa  209  6e-53  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_008061  Bcen_3730  two component LuxR family transcriptional regulator  40.31 
 
 
312 aa  209  6e-53  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008543  Bcen2424_4638  two component LuxR family transcriptional regulator  40.31 
 
 
312 aa  209  6e-53  Burkholderia cenocepacia HI2424  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_5514  two component LuxR family transcriptional regulator  43.17 
 
 
305 aa  208  1e-52  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.211273 
 
 
-
 
NC_008709  Ping_2984  two component transcriptional regulator, LuxR family protein  39.81 
 
 
295 aa  201  1.9999999999999998e-50  Psychromonas ingrahamii 37  Bacteria  normal  0.43543  normal  0.546259 
 
 
-
 
NC_011138  MADE_00878  two-component response regulator  38.32 
 
 
298 aa  194  1e-48  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_007794  Saro_1665  two component LuxR family transcriptional regulator  40.38 
 
 
307 aa  189  8e-47  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_4080  DNA-binding response regulator, LuxR family  50.68 
 
 
222 aa  155  7e-37  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.542388  n/a   
 
 
-
 
NC_010814  Glov_1118  response regulator receiver sensor signal transduction histidine kinase  49.26 
 
 
452 aa  138  1e-31  Geobacter lovleyi SZ  Bacteria  hitchhiker  0.000972917  n/a   
 
 
-
 
NC_007413  Ava_2149  response regulator receiver Signal transduction histidine kinase  48.09 
 
 
407 aa  137  2e-31  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.142048 
 
 
-
 
NC_013730  Slin_2507  two component, sigma54 specific, transcriptional regulator, Fis family  51.56 
 
 
488 aa  137  2e-31  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.182398 
 
 
-
 
NC_010571  Oter_0809  response regulator receiver sensor signal transduction histidine kinase  53.12 
 
 
367 aa  136  6.0000000000000005e-31  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_4136  response regulator receiver Signal transduction histidine kinase  52.99 
 
 
440 aa  132  7.999999999999999e-30  Anabaena variabilis ATCC 29413  Bacteria  decreased coverage  0.00000660181  hitchhiker  0.00876613 
 
 
-
 
NC_011884  Cyan7425_0790  multi-sensor signal transduction histidine kinase  46.1 
 
 
566 aa  132  1.0000000000000001e-29  Cyanothece sp. PCC 7425  Bacteria  normal  0.391268  normal 
 
 
-
 
NC_013440  Hoch_2175  response regulator receiver sensor signal transduction histidine kinase  52.99 
 
 
395 aa  131  1.0000000000000001e-29  Haliangium ochraceum DSM 14365  Bacteria  normal  0.924768  normal  0.400775 
 
 
-
 
NC_012918  GM21_3242  response regulator receiver sensor signal transduction histidine kinase  50.86 
 
 
441 aa  130  4.0000000000000003e-29  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_011884  Cyan7425_3210  response regulator receiver modulated diguanylate cyclase  48.41 
 
 
337 aa  130  4.0000000000000003e-29  Cyanothece sp. PCC 7425  Bacteria  normal  0.32327  normal  0.712325 
 
 
-
 
NC_013440  Hoch_6548  response regulator receiver sensor signal transduction histidine kinase  54.7 
 
 
397 aa  130  5.0000000000000004e-29  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.543575 
 
 
-
 
NC_010627  Bphy_7700  multi-sensor signal transduction histidine kinase  54.1 
 
 
541 aa  129  5.0000000000000004e-29  Burkholderia phymatum STM815  Bacteria  normal  0.163324  normal  0.507763 
 
 
-
 
NC_007413  Ava_2562  response regulator receiver Signal transduction histidine kinase  48.15 
 
 
437 aa  129  5.0000000000000004e-29  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_010625  Bphy_6559  multi-sensor signal transduction histidine kinase  54.1 
 
 
541 aa  129  6e-29  Burkholderia phymatum STM815  Bacteria  normal  normal  0.59439 
 
 
-
 
NC_014248  Aazo_4465  response regulator receiver sensor signal transduction histidine kinase  47.41 
 
 
437 aa  129  1.0000000000000001e-28  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_010571  Oter_1720  two component LuxR family transcriptional regulator  50.83 
 
 
301 aa  128  2.0000000000000002e-28  Opitutus terrae PB90-1  Bacteria  normal  0.162572  normal  0.616267 
 
 
-
 
NC_008312  Tery_4155  response regulator receiver sensor signal transduction histidine kinase  48.33 
 
 
440 aa  128  2.0000000000000002e-28  Trichodesmium erythraeum IMS101  Bacteria  normal  0.50715  normal 
 
 
-
 
NC_011146  Gbem_1018  response regulator receiver sensor signal transduction histidine kinase  47.41 
 
 
441 aa  126  6e-28  Geobacter bemidjiensis Bem  Bacteria  hitchhiker  0.00729938  n/a   
 
 
-
 
NC_009523  RoseRS_2347  response regulator receiver protein  45.32 
 
 
202 aa  125  1e-27  Roseiflexus sp. RS-1  Bacteria  normal  0.56815  normal 
 
 
-
 
NC_010676  Bphyt_6236  multi-sensor signal transduction histidine kinase  52.59 
 
 
553 aa  125  1e-27  Burkholderia phytofirmans PsJN  Bacteria  normal  normal  0.914679 
 
 
-
 
NC_011726  PCC8801_1350  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  47.93 
 
 
715 aa  124  2e-27  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013161  Cyan8802_1380  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  47.93 
 
 
715 aa  124  3e-27  Cyanothece sp. PCC 8802  Bacteria  normal  0.923401  normal 
 
 
-
 
NC_009767  Rcas_3134  response regulator receiver protein  46.43 
 
 
200 aa  123  4e-27  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_2150  response regulator receiver Signal transduction histidine kinase  48.33 
 
 
443 aa  123  6e-27  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.394463 
 
 
-
 
NC_014248  Aazo_4229  response regulator receiver sensor signal transduction histidine kinase  47.1 
 
 
383 aa  122  8e-27  'Nostoc azollae' 0708  Bacteria  normal  0.599633  n/a   
 
 
-
 
NC_011729  PCC7424_0178  response regulator receiver modulated diguanylate cyclase  48.76 
 
 
322 aa  122  8e-27  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.895619 
 
 
-
 
NC_011726  PCC8801_1139  response regulator receiver modulated diguanylate cyclase  44.7 
 
 
308 aa  121  9.999999999999999e-27  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_011726  PCC8801_2743  response regulator receiver sensor signal transduction histidine kinase  46.62 
 
 
395 aa  122  9.999999999999999e-27  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013161  Cyan8802_3359  response regulator receiver sensor signal transduction histidine kinase  46.62 
 
 
395 aa  122  9.999999999999999e-27  Cyanothece sp. PCC 8802  Bacteria  normal  0.361398  normal 
 
 
-
 
NC_013161  Cyan8802_1169  response regulator receiver modulated diguanylate cyclase  44.7 
 
 
308 aa  121  9.999999999999999e-27  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_014248  Aazo_1477  response regulator receiver modulated diguanylate cyclase  43.07 
 
 
317 aa  121  1.9999999999999998e-26  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_2382  response regulator receiver modulated metal dependent phosphohydrolase  49.19 
 
 
359 aa  120  3e-26  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_013216  Dtox_1577  response regulator receiver modulated diguanylate cyclase  45.31 
 
 
314 aa  119  7.999999999999999e-26  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_1192  response regulator receiver modulated diguanylate cyclase  53.28 
 
 
316 aa  119  9e-26  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_008554  Sfum_2303  response regulator receiver protein  45.04 
 
 
227 aa  119  9.999999999999999e-26  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_011729  PCC7424_0984  response regulator receiver modulated diguanylate cyclase  43.36 
 
 
353 aa  118  9.999999999999999e-26  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.194443 
 
 
-
 
NC_008709  Ping_0978  response regulator receiver modulated diguanylate cyclase  41.82 
 
 
322 aa  117  3e-25  Psychromonas ingrahamii 37  Bacteria  normal  0.97362  decreased coverage  0.00116316 
 
 
-
 
NC_008609  Ppro_2062  response regulator receiver protein  39.88 
 
 
217 aa  116  5e-25  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_011726  PCC8801_1483  response regulator receiver sensor signal transduction histidine kinase  40.28 
 
 
374 aa  116  6e-25  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013161  Cyan8802_1510  response regulator receiver sensor signal transduction histidine kinase  40.28 
 
 
374 aa  116  6e-25  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_011146  Gbem_1228  response regulator receiver modulated diguanylate cyclase  46.72 
 
 
349 aa  116  6.9999999999999995e-25  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_009719  Plav_2815  response regulator receiver modulated diguanylate cyclase  51.79 
 
 
457 aa  116  6.9999999999999995e-25  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.631579  normal  0.0857187 
 
 
-
 
NC_012880  Dd703_3123  response regulator receiver modulated diguanylate cyclase  50 
 
 
312 aa  115  7.999999999999999e-25  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_011729  PCC7424_2188  response regulator receiver sensor signal transduction histidine kinase  40.91 
 
 
384 aa  115  7.999999999999999e-25  Cyanothece sp. PCC 7424  Bacteria  n/a    hitchhiker  0.00677544 
 
 
-
 
NC_011769  DvMF_1097  response regulator receiver modulated metal dependent phosphohydrolase  51.26 
 
 
391 aa  115  1.0000000000000001e-24  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.151318 
 
 
-
 
NC_010551  BamMC406_1236  response regulator receiver sensor signal transduction histidine kinase  45.31 
 
 
386 aa  114  2.0000000000000002e-24  Burkholderia ambifaria MC40-6  Bacteria  normal  0.493129  normal 
 
 
-
 
NC_009012  Cthe_1826  response regulator receiver sensor signal transduction histidine kinase  37.32 
 
 
363 aa  114  2.0000000000000002e-24  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_011726  PCC8801_0820  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  43.75 
 
 
593 aa  114  2.0000000000000002e-24  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013161  Cyan8802_0849  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  43.75 
 
 
593 aa  114  2.0000000000000002e-24  Cyanothece sp. PCC 8802  Bacteria  normal  0.386146  normal 
 
 
-
 
NC_010623  Bphy_4530  response regulator receiver sensor signal transduction histidine kinase  45.52 
 
 
386 aa  114  2.0000000000000002e-24  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_008576  Mmc1_3071  response regulator receiver protein  46.46 
 
 
390 aa  114  2.0000000000000002e-24  Magnetococcus sp. MC-1  Bacteria  normal  hitchhiker  0.000442652 
 
 
-
 
NC_014248  Aazo_5066  response regulator receiver modulated diguanylate cyclase  47.32 
 
 
338 aa  114  3e-24  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_008321  Shewmr4_0481  response regulator receiver modulated metal dependent phosphohydrolase  45.24 
 
 
348 aa  113  5e-24  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_3549  response regulator receiver modulated metal dependent phosphohydrolase  45.24 
 
 
348 aa  113  5e-24  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_008577  Shewana3_0479  response regulator receiver modulated metal dependent phosphohydrolase  45.24 
 
 
350 aa  113  5e-24  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_009092  Shew_3790  response regulator receiver modulated diguanylate cyclase  50 
 
 
300 aa  113  6e-24  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_011992  Dtpsy_0962  response regulator receiver modulated metal dependent phosphohydrolase  45.32 
 
 
377 aa  112  7.000000000000001e-24  Acidovorax ebreus TPSY  Bacteria  normal  0.115091  n/a   
 
 
-
 
NC_008782  Ajs_1044  response regulator receiver modulated metal dependent phosphohydrolase  45.32 
 
 
377 aa  112  1.0000000000000001e-23  Acidovorax sp. JS42  Bacteria  normal  normal  0.0516082 
 
 
-
 
NC_013522  Taci_1373  response regulator receiver modulated metal dependent phosphohydrolase  44.85 
 
 
365 aa  112  1.0000000000000001e-23  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  n/a   
 
 
-
 
NC_009092  Shew_3199  response regulator receiver modulated metal dependent phosphohydrolase  50 
 
 
339 aa  112  1.0000000000000001e-23  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_007796  Mhun_1941  response regulator receiver domain-containing protein  44.19 
 
 
156 aa  111  2.0000000000000002e-23  Methanospirillum hungatei JF-1  Archaea  normal  normal 
 
 
-
 
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