Gene Lcho_1083 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_1083 
Symbol 
ID6161522 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand+ 
Start bp1154961 
End bp1155911 
Gene Length951 bp 
Protein Length316 aa 
Translation table11 
GC content72% 
IMG OID641663837 
Producttwo component LuxR family transcriptional regulator 
Protein accessionYP_001790117 
Protein GI171057768 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG2771] DNA-binding HTH domain-containing proteins
[COG3437] Response regulator containing a CheY-like receiver domain and an HD-GYP domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones41 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTTGATC GCAACAACAA CGACCTGGTG CTGATCGTCG ACGACGTGCC CGACAACCTG 
GCGGTGCTGC ACGATGCGCT CGACGAATCC GGCTACACCG TGCTGGTGGC CACCAACGGC 
GCCGATGCGA TCGCGCGTGC ATCGCAGGCG CAGCCGCACA TCGTGCTGCT CGACGCGGTG 
ATGCCGGGCA TGGACGGCTT CGAGGTGGCG CGCCGGCTCA AGGCGCTGCC GGCCACGGCG 
CACATTCCGA TCGTCTTCAT GACCGGCCTG ACCGAAACCG AACACGTGCT GGCCGCCTTC 
GCCGCCGGCG GCTGCGACTA CGTCACCAAG CCGATCCGTG CCCGCGAGGT GCTGGCGCGC 
ATCGCCGCCC ACATGCACAC CGCGCGCGAG CAGCAGCTGG CGCGCAACGC GCTCGACGCC 
TTCGGCCATG CCAGCCTGGT GGTGCGGCTG ATCGACGGCC GCATCCTGTG GCAGACCGCG 
CTGGCGCGCC AGCTGCTGGC GCCCGCCGAT GCCGAGCCGG GCTGGGAGAG CCGGCGCGCG 
CCCACGCCGG TGCTGGCCTG GCTGCAGCGC GAGACCACCC GCCTGGCGGC GCAGCCGGTG 
CCGTCGAACG CCCAGGCCGC GTCGGTCGAG CTCGACGTCG GCGGGCGCCA GCTGCGCTGC 
ACGTTGCAGG AATCGACCGG CGACGGCGAG TGGCTGGTGG TGCTGCGCCA GGCCGACGAC 
GCCGCCACGC TCGAGGCCCT GGTGCTGGCC TTCCGCCTGA CCCCACGCGA GGCCGAGGTG 
CTGTACTGGC TGGCCAAGGG CAAGACCAAC CGCGACATCG GCGAGATCCT CGGATCGAGC 
GCCGCCACGG TGAAGAAGCA CCTCGAACAC GTCTACGAGA AGCTGGGCGT CGAGACCCGC 
AACGCGGCGG CGGCGGTGGC GATCGGCAAG GTGGCGCAGC TGGGGCGATG A
 
Protein sequence
MLDRNNNDLV LIVDDVPDNL AVLHDALDES GYTVLVATNG ADAIARASQA QPHIVLLDAV 
MPGMDGFEVA RRLKALPATA HIPIVFMTGL TETEHVLAAF AAGGCDYVTK PIRAREVLAR 
IAAHMHTARE QQLARNALDA FGHASLVVRL IDGRILWQTA LARQLLAPAD AEPGWESRRA 
PTPVLAWLQR ETTRLAAQPV PSNAQAASVE LDVGGRQLRC TLQESTGDGE WLVVLRQADD 
AATLEALVLA FRLTPREAEV LYWLAKGKTN RDIGEILGSS AATVKKHLEH VYEKLGVETR 
NAAAAVAIGK VAQLGR