More than 300 homologs were found in PanDaTox collection
for query gene Msil_2002 on replicon NC_011666
Organism: Methylocella silvestris BL2



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_011666  Msil_2002  two component transcriptional regulator, LuxR family  100 
 
 		 306 aa  620  1e-176  Methylocella silvestris BL2  Bacteria  n/a    normal  1 
 
 
-
 
NC_010581  Bind_0974  two component LuxR family transcriptional regulator  51.13 
 
 		 309 aa  308  5e-83  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.883175  normal  0.426964 
 
 
-
 
NC_009485  BBta_0652  two component LuxR family transcriptional regulator  51.16 
 
 		 305 aa  300  2e-80  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.0800453  normal  0.813173 
 
 
-
 
NC_007778  RPB_1250  two component LuxR family transcriptional regulator  50 
 
 		 309 aa  297  2e-79  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.886948  normal  1 
 
 
-
 
NC_011369  Rleg2_3066  two component transcriptional regulator, LuxR family  50.16 
 
 		 305 aa  295  5e-79  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007958  RPD_3866  response regulator receiver  50.33 
 
 		 309 aa  295  8e-79  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.370865  normal  1 
 
 
-
 
NC_012850  Rleg_3321  two component transcriptional regulator, LuxR family  49.84 
 
 		 305 aa  294  1e-78  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  1  normal  0.536368 
 
 
-
 
NC_011004  Rpal_1441  two component transcriptional regulator, LuxR family  51.85 
 
 		 308 aa  291  1e-77  Rhodopseudomonas palustris TIE-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_010511  M446_0591  two component LuxR family transcriptional regulator  51.85 
 
 		 301 aa  290  3e-77  Methylobacterium sp. 4-46  Bacteria  normal  0.477799  hitchhiker  0.00469436 
 
 
-
 
NC_010725  Mpop_3574  two component transcriptional regulator, LuxR family  53.54 
 
 		 301 aa  285  7e-76  Methylobacterium populi BJ001  Bacteria  normal  0.0249095  normal  1 
 
 
-
 
NC_011757  Mchl_3692  two component transcriptional regulator, LuxR family  53.38 
 
 		 300 aa  285  1.0000000000000001e-75  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.170876  normal  1 
 
 
-
 
NC_010172  Mext_3383  response regulator receiver  53.04 
 
 		 300 aa  283  2.0000000000000002e-75  Methylobacterium extorquens PA1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009620  Smed_4179  response regulator receiver protein  50.82 
 
 		 309 aa  283  3.0000000000000004e-75  Sinorhizobium medicae WSM419  Bacteria  normal  1  normal  0.15819 
 
 
-
 
NC_011989  Avi_3499  transcriptional regulator LuxR family  50.5 
 
 		 312 aa  280  2e-74  Agrobacterium vitis S4  Bacteria  normal  1  n/a   
 
 
-
 
NC_010505  Mrad2831_5514  two component LuxR family transcriptional regulator  52.16 
 
 		 305 aa  269  5e-71  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  1  normal  0.211273 
 
 
-
 
NC_008740  Maqu_3869  response regulator receiver protein  47.81 
 
 		 301 aa  262  6e-69  Marinobacter aquaeolei VT8  Bacteria  normal  1  n/a   
 
 
-
 
NC_009654  Mmwyl1_0962  response regulator receiver protein  45.03 
 
 		 304 aa  257  2e-67  Marinomonas sp. MWYL1  Bacteria  normal  0.512477  normal  1 
 
 
-
 
NC_007912  Sde_2977  response regulator receiver domain-containing protein  46.31 
 
 		 303 aa  256  3e-67  Saccharophagus degradans 2-40  Bacteria  normal  1  normal  0.13601 
 
 
-
 
NC_007794  Saro_1665  two component LuxR family transcriptional regulator  44.22 
 
 		 307 aa  237  2e-61  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  1  n/a   
 
 
-
 
NC_008825  Mpe_A3585  two component LuxR family transcriptional regulator  45.89 
 
 		 306 aa  234  1.0000000000000001e-60  Methylibium petroleiphilum PM1  Bacteria  normal  0.295986  normal  1 
 
 
-
 
NC_008825  Mpe_A0671  two component LuxR family transcriptional regulator  45.57 
 
 		 333 aa  234  2.0000000000000002e-60  Methylibium petroleiphilum PM1  Bacteria  normal  0.0205263  normal  1 
 
 
-
 
NC_011138  MADE_00878  two-component response regulator  39.87 
 
 		 298 aa  234  2.0000000000000002e-60  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  1  n/a   
 
 
-
 
NC_013422  Hneap_1587  two component transcriptional regulator, LuxR family  42.23 
 
 		 292 aa  233  4.0000000000000004e-60  Halothiobacillus neapolitanus c2  Bacteria  normal  0.522901  n/a   
 
 
-
 
NC_010524  Lcho_1083  two component LuxR family transcriptional regulator  44.88 
 
 		 316 aa  229  5e-59  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  1 
 
 
-
 
NC_008709  Ping_2984  two component transcriptional regulator, LuxR family protein  41.28 
 
 		 295 aa  229  5e-59  Psychromonas ingrahamii 37  Bacteria  normal  0.43543  normal  0.546259 
 
 
-
 
NC_007948  Bpro_0562  two component LuxR family transcriptional regulator  44.56 
 
 		 297 aa  226  3e-58  Polaromonas sp. JS666  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007298  Daro_1445  two component LuxR family transcriptional regulator  45.07 
 
 		 308 aa  226  4e-58  Dechloromonas aromatica RCB  Bacteria  normal  0.446624  normal  1 
 
 
-
 
NC_010515  Bcenmc03_5666  two component LuxR family transcriptional regulator  44.19 
 
 		 312 aa  225  7e-58  Burkholderia cenocepacia MC0-3  Bacteria  normal  1  normal  0.917296 
 
 
-
 
NC_007947  Mfla_1761  two component LuxR family transcriptional regulator  43.73 
 
 		 311 aa  223  2e-57  Methylobacillus flagellatus KT  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008061  Bcen_3730  two component LuxR family transcriptional regulator  43.87 
 
 		 312 aa  222  6e-57  Burkholderia cenocepacia AU 1054  Bacteria  normal  1  n/a   
 
 
-
 
NC_008543  Bcen2424_4638  two component LuxR family transcriptional regulator  43.87 
 
 		 312 aa  222  6e-57  Burkholderia cenocepacia HI2424  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008781  Pnap_0979  response regulator receiver protein  42.81 
 
 		 336 aa  219  6e-56  Polaromonas naphthalenivorans CJ2  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007908  Rfer_3397  two component LuxR family transcriptional regulator  44.94 
 
 		 328 aa  218  8.999999999999998e-56  Rhodoferax ferrireducens T118  Bacteria  normal  1  n/a   
 
 
-
 
NC_010002  Daci_0218  two component LuxR family transcriptional regulator  41.29 
 
 		 339 aa  218  1e-55  Delftia acidovorans SPH-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007948  Bpro_1354  two component LuxR family transcriptional regulator  41.64 
 
 		 349 aa  217  2e-55  Polaromonas sp. JS666  Bacteria  normal  1  normal  1 
 
 
-
 
NC_012791  Vapar_3147  two component transcriptional regulator, LuxR family  43.31 
 
 		 302 aa  215  9.999999999999999e-55  Variovorax paradoxus S110  Bacteria  normal  0.235206  n/a   
 
 
-
 
NC_008786  Veis_1731  response regulator receiver protein  41.42 
 
 		 361 aa  212  4.9999999999999996e-54  Verminephrobacter eiseniae EF01-2  Bacteria  normal  1  normal  0.319975 
 
 
-
 
NC_008752  Aave_3524  two component LuxR family transcriptional regulator  42.72 
 
 		 353 aa  211  9e-54  Acidovorax citrulli AAC00-1  Bacteria  normal  0.406085  normal  0.428998 
 
 
-
 
NC_012791  Vapar_4238  two component transcriptional regulator, LuxR family  40.36 
 
 		 356 aa  209  6e-53  Variovorax paradoxus S110  Bacteria  normal  1  n/a   
 
 
-
 
NC_007952  Bxe_B1713  two component LuxR family transcriptional regulator  39.45 
 
 		 361 aa  206  4e-52  Burkholderia xenovorans LB400  Bacteria  normal  0.310925  normal  1 
 
 
-
 
NC_004578  PSPTO_4080  DNA-binding response regulator, LuxR family  52.63 
 
 		 222 aa  151  1e-35  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.542388  n/a   
 
 
-
 
NC_010571  Oter_1720  two component LuxR family transcriptional regulator  34.41 
 
 		 301 aa  151  1e-35  Opitutus terrae PB90-1  Bacteria  normal  0.162572  normal  0.616267 
 
 
-
 
NC_010625  Bphy_6559  multi-sensor signal transduction histidine kinase  50.86 
 
 		 541 aa  129  7.000000000000001e-29  Burkholderia phymatum STM815  Bacteria  normal  1  normal  0.59439 
 
 
-
 
NC_010627  Bphy_7700  multi-sensor signal transduction histidine kinase  49.15 
 
 		 541 aa  126  5e-28  Burkholderia phymatum STM815  Bacteria  normal  0.163324  normal  0.507763 
 
 
-
 
NC_010676  Bphyt_6236  multi-sensor signal transduction histidine kinase  47.5 
 
 		 553 aa  122  7e-27  Burkholderia phytofirmans PsJN  Bacteria  normal  1  normal  0.914679 
 
 
-
 
NC_013730  Slin_2507  two component, sigma54 specific, transcriptional regulator, Fis family  46.28 
 
 		 488 aa  122  9.999999999999999e-27  Spirosoma linguale DSM 74  Bacteria  normal  1  normal  0.182398 
 
 
-
 
NC_011884  Cyan7425_0790  multi-sensor signal transduction histidine kinase  46.03 
 
 		 566 aa  120  1.9999999999999998e-26  Cyanothece sp. PCC 7425  Bacteria  normal  0.391268  normal  1 
 
 
-
 
NC_010571  Oter_0809  response regulator receiver sensor signal transduction histidine kinase  45.6 
 
 		 367 aa  120  3e-26  Opitutus terrae PB90-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011884  Cyan7425_3210  response regulator receiver modulated diguanylate cyclase  48.28 
 
 		 337 aa  119  7e-26  Cyanothece sp. PCC 7425  Bacteria  normal  0.32327  normal  0.712325 
 
 
-
 
NC_013440  Hoch_6548  response regulator receiver sensor signal transduction histidine kinase  46.28 
 
 		 397 aa  118  9.999999999999999e-26  Haliangium ochraceum DSM 14365  Bacteria  normal  1  normal  0.543575 
 
 
-
 
NC_010551  BamMC406_1236  response regulator receiver sensor signal transduction histidine kinase  47.41 
 
 		 386 aa  118  1.9999999999999998e-25  Burkholderia ambifaria MC40-6  Bacteria  normal  0.493129  normal  1 
 
 
-
 
NC_011729  PCC7424_5086  response regulator receiver modulated diguanylate cyclase  46.61 
 
 		 465 aa  117  1.9999999999999998e-25  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  1 
 
 
-
 
NC_009767  Rcas_3134  response regulator receiver protein  47.46 
 
 		 200 aa  116  3.9999999999999997e-25  Roseiflexus castenholzii DSM 13941  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007413  Ava_2149  response regulator receiver Signal transduction histidine kinase  32.95 
 
 		 407 aa  116  3.9999999999999997e-25  Anabaena variabilis ATCC 29413  Bacteria  normal  1  normal  0.142048 
 
 
-
 
NC_007413  Ava_2150  response regulator receiver Signal transduction histidine kinase  46.55 
 
 		 443 aa  115  8.999999999999998e-25  Anabaena variabilis ATCC 29413  Bacteria  normal  1  normal  0.394463 
 
 
-
 
NC_007413  Ava_2562  response regulator receiver Signal transduction histidine kinase  41.61 
 
 		 437 aa  115  1.0000000000000001e-24  Anabaena variabilis ATCC 29413  Bacteria  normal  1  normal  1 
 
 
-
 
NC_014248  Aazo_4465  response regulator receiver sensor signal transduction histidine kinase  45.69 
 
 		 437 aa  114  1.0000000000000001e-24  'Nostoc azollae' 0708  Bacteria  normal  1  n/a   
 
 
-
 
NC_010623  Bphy_4530  response regulator receiver sensor signal transduction histidine kinase  46.55 
 
 		 386 aa  114  1.0000000000000001e-24  Burkholderia phymatum STM815  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013440  Hoch_2175  response regulator receiver sensor signal transduction histidine kinase  44.63 
 
 		 395 aa  114  2.0000000000000002e-24  Haliangium ochraceum DSM 14365  Bacteria  normal  0.924768  normal  0.400775 
 
 
-
 
NC_013161  Cyan8802_1380  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  34.73 
 
 		 715 aa  114  2.0000000000000002e-24  Cyanothece sp. PCC 8802  Bacteria  normal  0.923401  normal  1 
 
 
-
 
NC_007413  Ava_4136  response regulator receiver Signal transduction histidine kinase  44.83 
 
 		 440 aa  114  3e-24  Anabaena variabilis ATCC 29413  Bacteria  decreased coverage  0.00000660181  hitchhiker  0.00876613 
 
 
-
 
NC_009012  Cthe_1826  response regulator receiver sensor signal transduction histidine kinase  43.1 
 
 		 363 aa  113  4.0000000000000004e-24  Clostridium thermocellum ATCC 27405  Bacteria  normal  1  n/a   
 
 
-
 
NC_011726  PCC8801_1350  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  34.13 
 
 		 715 aa  113  5e-24  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_007955  Mbur_0695  response regulator receiver  44.54 
 
 		 170 aa  112  6e-24  Methanococcoides burtonii DSM 6242  Archaea  normal  0.412637  n/a   
 
 
-
 
NC_010681  Bphyt_2397  two component transcriptional regulator, AraC family  45 
 
 		 269 aa  112  7.000000000000001e-24  Burkholderia phytofirmans PsJN  Bacteria  normal  0.92999  normal  0.351016 
 
 
-
 
NC_009997  Sbal195_0871  response regulator receiver modulated metal dependent phosphohydrolase  47.86 
 
 		 338 aa  112  1.0000000000000001e-23  Shewanella baltica OS195  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009052  Sbal_3504  response regulator receiver modulated metal dependent phosphohydrolase  47.86 
 
 		 338 aa  111  1.0000000000000001e-23  Shewanella baltica OS155  Bacteria  normal  1  n/a   
 
 
-
 
NC_010814  Glov_1118  response regulator receiver sensor signal transduction histidine kinase  45.53 
 
 		 452 aa  111  1.0000000000000001e-23  Geobacter lovleyi SZ  Bacteria  hitchhiker  0.000972917  n/a   
 
 
-
 
NC_011663  Sbal223_0859  response regulator receiver modulated metal dependent phosphohydrolase  47.86 
 
 		 338 aa  111  1.0000000000000001e-23  Shewanella baltica OS223  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009901  Spea_0629  response regulator receiver modulated metal dependent phosphohydrolase  46.15 
 
 		 339 aa  111  1.0000000000000001e-23  Shewanella pealeana ATCC 700345  Bacteria  normal  1  n/a   
 
 
-
 
NC_009665  Shew185_0836  response regulator receiver modulated metal dependent phosphohydrolase  47.86 
 
 		 338 aa  111  1.0000000000000001e-23  Shewanella baltica OS185  Bacteria  normal  1  n/a   
 
 
-
 
NC_009523  RoseRS_2347  response regulator receiver protein  46.61 
 
 		 202 aa  110  2.0000000000000002e-23  Roseiflexus sp. RS-1  Bacteria  normal  0.56815  normal  1 
 
 
-
 
NC_010571  Oter_3794  response regulator receiver sensor signal transduction histidine kinase  43.48 
 
 		 376 aa  111  2.0000000000000002e-23  Opitutus terrae PB90-1  Bacteria  normal  0.0277983  normal  0.543799 
 
 
-
 
NC_004347  SO_0860  response regulator  47.01 
 
 		 339 aa  110  4.0000000000000004e-23  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_007760  Adeh_3688  response regulator receiver domain-containing protein  42.86 
 
 		 718 aa  109  4.0000000000000004e-23  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  1  n/a   
 
 
-
 
NC_009438  Sputcn32_3141  response regulator receiver modulated metal dependent phosphohydrolase  47.01 
 
 		 338 aa  109  6e-23  Shewanella putrefaciens CN-32  Bacteria  normal  1  n/a   
 
 
-
 
NC_010557  BamMC406_6071  two component AraC family transcriptional regulator  45 
 
 		 271 aa  109  7.000000000000001e-23  Burkholderia ambifaria MC40-6  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011891  A2cp1_3829  response regulator receiver protein  42.86 
 
 		 713 aa  109  7.000000000000001e-23  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.0106552  n/a   
 
 
-
 
NC_011145  AnaeK_3746  response regulator receiver protein  42.86 
 
 		 714 aa  109  7.000000000000001e-23  Anaeromyxobacter sp. K  Bacteria  normal  0.374039  n/a   
 
 
-
 
NC_009092  Shew_3199  response regulator receiver modulated metal dependent phosphohydrolase  44.44 
 
 		 339 aa  109  7.000000000000001e-23  Shewanella loihica PV-4  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013522  Taci_0090  two component transcriptional regulator, winged helix family  36.42 
 
 		 228 aa  108  8.000000000000001e-23  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  1  n/a   
 
 
-
 
NC_008321  Shewmr4_0716  response regulator receiver modulated metal dependent phosphohydrolase  46.15 
 
 		 338 aa  108  8.000000000000001e-23  Shewanella sp. MR-4  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008322  Shewmr7_3306  response regulator receiver modulated metal dependent phosphohydrolase  46.15 
 
 		 338 aa  108  8.000000000000001e-23  Shewanella sp. MR-7  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008577  Shewana3_3418  response regulator receiver modulated metal dependent phosphohydrolase  46.15 
 
 		 338 aa  108  8.000000000000001e-23  Shewanella sp. ANA-3  Bacteria  normal  1  normal  1 
 
 
-
 
NC_014248  Aazo_4229  response regulator receiver sensor signal transduction histidine kinase  37.98 
 
 		 383 aa  108  9.000000000000001e-23  'Nostoc azollae' 0708  Bacteria  normal  0.599633  n/a   
 
 
-
 
NC_003910  CPS_4166  response regulator  43.59 
 
 		 508 aa  108  1e-22  Colwellia psychrerythraea 34H  Bacteria  normal  1  n/a   
 
 
-
 
NC_008340  Mlg_2429  response regulator receiver modulated metal dependent phosphohydrolase  41.53 
 
 		 480 aa  108  1e-22  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  1  normal  0.129673 
 
 
-
 
NC_011729  PCC7424_0178  response regulator receiver modulated diguanylate cyclase  43.1 
 
 		 322 aa  108  1e-22  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.895619 
 
 
-
 
NC_008392  Bamb_6368  two component AraC family transcriptional regulator  45 
 
 		 271 aa  108  1e-22  Burkholderia ambifaria AMMD  Bacteria  normal  0.434467  normal  1 
 
 
-
 
NC_008609  Ppro_2062  response regulator receiver protein  43.9 
 
 		 217 aa  108  1e-22  Pelobacter propionicus DSM 2379  Bacteria  normal  1  n/a   
 
 
-
 
NC_007413  Ava_0124  response regulator receiver Signal transduction histidine kinase  39.83 
 
 		 470 aa  107  2e-22  Anabaena variabilis ATCC 29413  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008312  Tery_4155  response regulator receiver sensor signal transduction histidine kinase  45.9 
 
 		 440 aa  107  2e-22  Trichodesmium erythraeum IMS101  Bacteria  normal  0.50715  normal  1 
 
 
-
 
NC_012560  Avin_29300  Response regulator  46.34 
 
 		 310 aa  107  2e-22  Azotobacter vinelandii DJ  Bacteria  normal  1  n/a   
 
 
-
 
NC_008700  Sama_2951  response regulator receiver protein  45.3 
 
 		 340 aa  107  2e-22  Shewanella amazonensis SB2B  Bacteria  normal  1  normal  0.129077 
 
 
-
 
NC_011831  Cagg_1006  response regulator receiver modulated diguanylate cyclase  38.31 
 
 		 312 aa  107  3e-22  Chloroflexus aggregans DSM 9485  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009675  Anae109_3814  response regulator receiver protein  42.02 
 
 		 735 aa  107  3e-22  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.706947  hitchhiker  0.0056347 
 
 
-
 
NC_008554  Sfum_2303  response regulator receiver protein  42.98 
 
 		 227 aa  106  4e-22  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013173  Dbac_2998  response regulator receiver protein  35.23 
 
 		 377 aa  106  4e-22  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  1  n/a   
 
 
-
 
NC_011729  PCC7424_2188  response regulator receiver sensor signal transduction histidine kinase  39.02 
 
 		 384 aa  106  4e-22  Cyanothece sp. PCC 7424  Bacteria  n/a    hitchhiker  0.00677544 
 
 
-
 
NC_011726  PCC8801_2743  response regulator receiver sensor signal transduction histidine kinase  36.8 
 
 		 395 aa  105  7e-22  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
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