More than 300 homologs were found in PanDaTox collection
for query gene Mpe_A0671 on replicon NC_008825
Organism: Methylibium petroleiphilum PM1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008825  Mpe_A0671  two component LuxR family transcriptional regulator  100 
 
 
333 aa  659    Methylibium petroleiphilum PM1  Bacteria  normal  0.0205263  normal 
 
 
-
 
NC_007298  Daro_1445  two component LuxR family transcriptional regulator  65.36 
 
 
308 aa  377  1e-103  Dechloromonas aromatica RCB  Bacteria  normal  0.446624  normal 
 
 
-
 
NC_008752  Aave_3524  two component LuxR family transcriptional regulator  61.18 
 
 
353 aa  372  1e-102  Acidovorax citrulli AAC00-1  Bacteria  normal  0.406085  normal  0.428998 
 
 
-
 
NC_007908  Rfer_3397  two component LuxR family transcriptional regulator  62.7 
 
 
328 aa  372  1e-102  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_007948  Bpro_1354  two component LuxR family transcriptional regulator  61.85 
 
 
349 aa  373  1e-102  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_008781  Pnap_0979  response regulator receiver protein  58.19 
 
 
336 aa  365  1e-100  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_012791  Vapar_4238  two component transcriptional regulator, LuxR family  57.06 
 
 
356 aa  365  1e-100  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_1083  two component LuxR family transcriptional regulator  62.06 
 
 
316 aa  363  2e-99  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_008786  Veis_1731  response regulator receiver protein  55.24 
 
 
361 aa  333  3e-90  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.319975 
 
 
-
 
NC_007947  Mfla_1761  two component LuxR family transcriptional regulator  56.09 
 
 
311 aa  333  3e-90  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_010581  Bind_0974  two component LuxR family transcriptional regulator  47.18 
 
 
309 aa  266  2.9999999999999995e-70  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.883175  normal  0.426964 
 
 
-
 
NC_011369  Rleg2_3066  two component transcriptional regulator, LuxR family  48.1 
 
 
305 aa  261  1e-68  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_007952  Bxe_B1713  two component LuxR family transcriptional regulator  44.26 
 
 
361 aa  259  5.0000000000000005e-68  Burkholderia xenovorans LB400  Bacteria  normal  0.310925  normal 
 
 
-
 
NC_009620  Smed_4179  response regulator receiver protein  47.65 
 
 
309 aa  256  5e-67  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.15819 
 
 
-
 
NC_013422  Hneap_1587  two component transcriptional regulator, LuxR family  45.97 
 
 
292 aa  252  5.000000000000001e-66  Halothiobacillus neapolitanus c2  Bacteria  normal  0.522901  n/a   
 
 
-
 
NC_009485  BBta_0652  two component LuxR family transcriptional regulator  45.6 
 
 
305 aa  251  9.000000000000001e-66  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.0800453  normal  0.813173 
 
 
-
 
NC_012850  Rleg_3321  two component transcriptional regulator, LuxR family  46.52 
 
 
305 aa  251  9.000000000000001e-66  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.536368 
 
 
-
 
NC_010511  M446_0591  two component LuxR family transcriptional regulator  49.5 
 
 
301 aa  249  4e-65  Methylobacterium sp. 4-46  Bacteria  normal  0.477799  hitchhiker  0.00469436 
 
 
-
 
NC_011989  Avi_3499  transcriptional regulator LuxR family  45.69 
 
 
312 aa  246  4e-64  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_0962  response regulator receiver protein  44.92 
 
 
304 aa  246  6e-64  Marinomonas sp. MWYL1  Bacteria  normal  0.512477  normal 
 
 
-
 
NC_007778  RPB_1250  two component LuxR family transcriptional regulator  47.62 
 
 
309 aa  245  6.999999999999999e-64  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.886948  normal 
 
 
-
 
NC_007958  RPD_3866  response regulator receiver  46.6 
 
 
309 aa  243  3e-63  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.370865  normal 
 
 
-
 
NC_010515  Bcenmc03_5666  two component LuxR family transcriptional regulator  46.39 
 
 
312 aa  241  1e-62  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.917296 
 
 
-
 
NC_008825  Mpe_A3585  two component LuxR family transcriptional regulator  49.32 
 
 
306 aa  241  1e-62  Methylibium petroleiphilum PM1  Bacteria  normal  0.295986  normal 
 
 
-
 
NC_008740  Maqu_3869  response regulator receiver protein  47.49 
 
 
301 aa  241  1e-62  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_010725  Mpop_3574  two component transcriptional regulator, LuxR family  48.83 
 
 
301 aa  240  2e-62  Methylobacterium populi BJ001  Bacteria  normal  0.0249095  normal 
 
 
-
 
NC_007912  Sde_2977  response regulator receiver domain-containing protein  42.58 
 
 
303 aa  240  2e-62  Saccharophagus degradans 2-40  Bacteria  normal  normal  0.13601 
 
 
-
 
NC_008061  Bcen_3730  two component LuxR family transcriptional regulator  46.71 
 
 
312 aa  240  2.9999999999999997e-62  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008543  Bcen2424_4638  two component LuxR family transcriptional regulator  46.71 
 
 
312 aa  240  2.9999999999999997e-62  Burkholderia cenocepacia HI2424  Bacteria  normal  normal 
 
 
-
 
NC_007948  Bpro_0562  two component LuxR family transcriptional regulator  45.95 
 
 
297 aa  239  5e-62  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_1441  two component transcriptional regulator, LuxR family  45.58 
 
 
308 aa  238  6.999999999999999e-62  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_010172  Mext_3383  response regulator receiver  48.66 
 
 
300 aa  236  3e-61  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_3692  two component transcriptional regulator, LuxR family  48.66 
 
 
300 aa  236  5.0000000000000005e-61  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.170876  normal 
 
 
-
 
NC_010505  Mrad2831_5514  two component LuxR family transcriptional regulator  48.68 
 
 
305 aa  235  9e-61  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.211273 
 
 
-
 
NC_010002  Daci_0218  two component LuxR family transcriptional regulator  45.17 
 
 
339 aa  234  1.0000000000000001e-60  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_011666  Msil_2002  two component transcriptional regulator, LuxR family  45.57 
 
 
306 aa  234  2.0000000000000002e-60  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_008709  Ping_2984  two component transcriptional regulator, LuxR family protein  43.56 
 
 
295 aa  220  3e-56  Psychromonas ingrahamii 37  Bacteria  normal  0.43543  normal  0.546259 
 
 
-
 
NC_011138  MADE_00878  two-component response regulator  40.45 
 
 
298 aa  219  6e-56  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_007794  Saro_1665  two component LuxR family transcriptional regulator  41.36 
 
 
307 aa  199  7.999999999999999e-50  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  n/a   
 
 
-
 
NC_010571  Oter_1720  two component LuxR family transcriptional regulator  41.03 
 
 
301 aa  186  3e-46  Opitutus terrae PB90-1  Bacteria  normal  0.162572  normal  0.616267 
 
 
-
 
NC_012791  Vapar_3147  two component transcriptional regulator, LuxR family  56.79 
 
 
302 aa  181  1e-44  Variovorax paradoxus S110  Bacteria  normal  0.235206  n/a   
 
 
-
 
NC_004578  PSPTO_4080  DNA-binding response regulator, LuxR family  55.15 
 
 
222 aa  160  3e-38  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.542388  n/a   
 
 
-
 
NC_013730  Slin_2507  two component, sigma54 specific, transcriptional regulator, Fis family  51.91 
 
 
488 aa  143  4e-33  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.182398 
 
 
-
 
NC_010814  Glov_1118  response regulator receiver sensor signal transduction histidine kinase  44 
 
 
452 aa  136  6.0000000000000005e-31  Geobacter lovleyi SZ  Bacteria  hitchhiker  0.000972917  n/a   
 
 
-
 
NC_011884  Cyan7425_0790  multi-sensor signal transduction histidine kinase  43.38 
 
 
566 aa  132  1.0000000000000001e-29  Cyanothece sp. PCC 7425  Bacteria  normal  0.391268  normal 
 
 
-
 
NC_010627  Bphy_7700  multi-sensor signal transduction histidine kinase  54.17 
 
 
541 aa  131  1.0000000000000001e-29  Burkholderia phymatum STM815  Bacteria  normal  0.163324  normal  0.507763 
 
 
-
 
NC_013440  Hoch_6548  response regulator receiver sensor signal transduction histidine kinase  53.85 
 
 
397 aa  131  2.0000000000000002e-29  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.543575 
 
 
-
 
NC_010625  Bphy_6559  multi-sensor signal transduction histidine kinase  56.03 
 
 
541 aa  131  2.0000000000000002e-29  Burkholderia phymatum STM815  Bacteria  normal  normal  0.59439 
 
 
-
 
NC_007413  Ava_4136  response regulator receiver Signal transduction histidine kinase  47.01 
 
 
440 aa  129  6e-29  Anabaena variabilis ATCC 29413  Bacteria  decreased coverage  0.00000660181  hitchhiker  0.00876613 
 
 
-
 
NC_007413  Ava_2562  response regulator receiver Signal transduction histidine kinase  45.52 
 
 
437 aa  127  2.0000000000000002e-28  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_013440  Hoch_2175  response regulator receiver sensor signal transduction histidine kinase  53.45 
 
 
395 aa  127  3e-28  Haliangium ochraceum DSM 14365  Bacteria  normal  0.924768  normal  0.400775 
 
 
-
 
NC_007413  Ava_2149  response regulator receiver Signal transduction histidine kinase  46.34 
 
 
407 aa  127  4.0000000000000003e-28  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.142048 
 
 
-
 
NC_010676  Bphyt_6236  multi-sensor signal transduction histidine kinase  52.59 
 
 
553 aa  127  4.0000000000000003e-28  Burkholderia phytofirmans PsJN  Bacteria  normal  normal  0.914679 
 
 
-
 
NC_012918  GM21_3242  response regulator receiver sensor signal transduction histidine kinase  47.11 
 
 
441 aa  127  4.0000000000000003e-28  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_011726  PCC8801_1139  response regulator receiver modulated diguanylate cyclase  42.66 
 
 
308 aa  126  5e-28  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013161  Cyan8802_1169  response regulator receiver modulated diguanylate cyclase  42.66 
 
 
308 aa  126  5e-28  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_013216  Dtox_1577  response regulator receiver modulated diguanylate cyclase  46.21 
 
 
314 aa  126  5e-28  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_008321  Shewmr4_0481  response regulator receiver modulated metal dependent phosphohydrolase  48.8 
 
 
348 aa  126  6e-28  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_3549  response regulator receiver modulated metal dependent phosphohydrolase  48.8 
 
 
348 aa  126  7e-28  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_010571  Oter_0809  response regulator receiver sensor signal transduction histidine kinase  50.42 
 
 
367 aa  125  8.000000000000001e-28  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
NC_011884  Cyan7425_3210  response regulator receiver modulated diguanylate cyclase  45.24 
 
 
337 aa  125  1e-27  Cyanothece sp. PCC 7425  Bacteria  normal  0.32327  normal  0.712325 
 
 
-
 
NC_011146  Gbem_1018  response regulator receiver sensor signal transduction histidine kinase  46.55 
 
 
441 aa  125  1e-27  Geobacter bemidjiensis Bem  Bacteria  hitchhiker  0.00729938  n/a   
 
 
-
 
NC_008577  Shewana3_0479  response regulator receiver modulated metal dependent phosphohydrolase  46.83 
 
 
350 aa  125  1e-27  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_014248  Aazo_4465  response regulator receiver sensor signal transduction histidine kinase  44.72 
 
 
437 aa  125  1e-27  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_2382  response regulator receiver modulated metal dependent phosphohydrolase  42.03 
 
 
359 aa  124  3e-27  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_009523  RoseRS_2347  response regulator receiver protein  40.94 
 
 
202 aa  123  3e-27  Roseiflexus sp. RS-1  Bacteria  normal  0.56815  normal 
 
 
-
 
NC_009767  Rcas_3134  response regulator receiver protein  39.74 
 
 
200 aa  122  9.999999999999999e-27  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_011729  PCC7424_0178  response regulator receiver modulated diguanylate cyclase  43.7 
 
 
322 aa  122  9.999999999999999e-27  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.895619 
 
 
-
 
NC_009012  Cthe_1826  response regulator receiver sensor signal transduction histidine kinase  38 
 
 
363 aa  121  1.9999999999999998e-26  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_013161  Cyan8802_3359  response regulator receiver sensor signal transduction histidine kinase  43.85 
 
 
395 aa  121  1.9999999999999998e-26  Cyanothece sp. PCC 8802  Bacteria  normal  0.361398  normal 
 
 
-
 
NC_011726  PCC8801_2743  response regulator receiver sensor signal transduction histidine kinase  43.85 
 
 
395 aa  121  1.9999999999999998e-26  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_010002  Daci_1192  response regulator receiver modulated diguanylate cyclase  44.38 
 
 
316 aa  120  3e-26  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_013161  Cyan8802_1380  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  37.3 
 
 
715 aa  120  3.9999999999999996e-26  Cyanothece sp. PCC 8802  Bacteria  normal  0.923401  normal 
 
 
-
 
NC_011726  PCC8801_1350  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  37.3 
 
 
715 aa  120  3.9999999999999996e-26  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_014248  Aazo_4229  response regulator receiver sensor signal transduction histidine kinase  43.85 
 
 
383 aa  120  3.9999999999999996e-26  'Nostoc azollae' 0708  Bacteria  normal  0.599633  n/a   
 
 
-
 
NC_007796  Mhun_1941  response regulator receiver domain-containing protein  42.86 
 
 
156 aa  118  9.999999999999999e-26  Methanospirillum hungatei JF-1  Archaea  normal  normal 
 
 
-
 
NC_008312  Tery_4155  response regulator receiver sensor signal transduction histidine kinase  43.44 
 
 
440 aa  118  9.999999999999999e-26  Trichodesmium erythraeum IMS101  Bacteria  normal  0.50715  normal 
 
 
-
 
NC_011729  PCC7424_2188  response regulator receiver sensor signal transduction histidine kinase  41.1 
 
 
384 aa  118  1.9999999999999998e-25  Cyanothece sp. PCC 7424  Bacteria  n/a    hitchhiker  0.00677544 
 
 
-
 
NC_009092  Shew_3790  response regulator receiver modulated diguanylate cyclase  48.36 
 
 
300 aa  117  1.9999999999999998e-25  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_008709  Ping_0978  response regulator receiver modulated diguanylate cyclase  42.22 
 
 
322 aa  117  3e-25  Psychromonas ingrahamii 37  Bacteria  normal  0.97362  decreased coverage  0.00116316 
 
 
-
 
NC_010571  Oter_3856  response regulator receiver sensor signal transduction histidine kinase  38.83 
 
 
378 aa  116  3.9999999999999997e-25  Opitutus terrae PB90-1  Bacteria  normal  normal  0.215089 
 
 
-
 
NC_012880  Dd703_3123  response regulator receiver modulated diguanylate cyclase  49.14 
 
 
312 aa  116  6e-25  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_2452  response regulator receiver modulated metal dependent phosphohydrolase  49.19 
 
 
377 aa  115  1.0000000000000001e-24  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.00101758 
 
 
-
 
NC_011138  MADE_03429  two-component system response regulator (hybrid family) protein  44.09 
 
 
358 aa  115  2.0000000000000002e-24  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_014248  Aazo_5066  response regulator receiver modulated diguanylate cyclase  46.55 
 
 
338 aa  113  4.0000000000000004e-24  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_2589  response regulator receiver modulated metal dependent phosphohydrolase  48.85 
 
 
375 aa  113  5e-24  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.0322399 
 
 
-
 
NC_011729  PCC7424_0984  response regulator receiver modulated diguanylate cyclase  44.63 
 
 
353 aa  112  6e-24  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.194443 
 
 
-
 
NC_013161  Cyan8802_1510  response regulator receiver sensor signal transduction histidine kinase  39.23 
 
 
374 aa  112  8.000000000000001e-24  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_011726  PCC8801_1483  response regulator receiver sensor signal transduction histidine kinase  39.23 
 
 
374 aa  112  8.000000000000001e-24  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_003910  CPS_4164  response regulator/phosphatase  48 
 
 
352 aa  112  9e-24  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_008576  Mmc1_3071  response regulator receiver protein  41.01 
 
 
390 aa  112  9e-24  Magnetococcus sp. MC-1  Bacteria  normal  hitchhiker  0.000442652 
 
 
-
 
NC_011663  Sbal223_0859  response regulator receiver modulated metal dependent phosphohydrolase  44.72 
 
 
338 aa  112  1.0000000000000001e-23  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_009665  Shew185_0836  response regulator receiver modulated metal dependent phosphohydrolase  44.72 
 
 
338 aa  112  1.0000000000000001e-23  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_0871  response regulator receiver modulated metal dependent phosphohydrolase  44.72 
 
 
338 aa  112  1.0000000000000001e-23  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_009052  Sbal_3504  response regulator receiver modulated metal dependent phosphohydrolase  44.72 
 
 
338 aa  112  1.0000000000000001e-23  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_3523  response regulator receiver modulated metal dependent phosphohydrolase  47.97 
 
 
363 aa  112  1.0000000000000001e-23  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_014248  Aazo_1477  response regulator receiver modulated diguanylate cyclase  40 
 
 
317 aa  112  1.0000000000000001e-23  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_010551  BamMC406_1236  response regulator receiver sensor signal transduction histidine kinase  42.28 
 
 
386 aa  112  1.0000000000000001e-23  Burkholderia ambifaria MC40-6  Bacteria  normal  0.493129  normal 
 
 
-
 
NC_008700  Sama_2951  response regulator receiver protein  46.34 
 
 
340 aa  111  1.0000000000000001e-23  Shewanella amazonensis SB2B  Bacteria  normal  normal  0.129077 
 
 
-
 
NC_010623  Bphy_4530  response regulator receiver sensor signal transduction histidine kinase  40.44 
 
 
386 aa  111  2.0000000000000002e-23  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
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