More than 300 homologs were found in PanDaTox collection
for query gene Mpop_3574 on replicon NC_010725
Organism: Methylobacterium populi BJ001



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010725  Mpop_3574  two component transcriptional regulator, LuxR family  100 
 
 
301 aa  593  1e-168  Methylobacterium populi BJ001  Bacteria  normal  0.0249095  normal 
 
 
-
 
NC_011757  Mchl_3692  two component transcriptional regulator, LuxR family  92.36 
 
 
300 aa  525  1e-148  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.170876  normal 
 
 
-
 
NC_010172  Mext_3383  response regulator receiver  92.03 
 
 
300 aa  524  1e-148  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_5514  two component LuxR family transcriptional regulator  80.27 
 
 
305 aa  434  1e-121  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.211273 
 
 
-
 
NC_010511  M446_0591  two component LuxR family transcriptional regulator  69.97 
 
 
301 aa  379  1e-104  Methylobacterium sp. 4-46  Bacteria  normal  0.477799  hitchhiker  0.00469436 
 
 
-
 
NC_010581  Bind_0974  two component LuxR family transcriptional regulator  61.33 
 
 
309 aa  344  8.999999999999999e-94  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.883175  normal  0.426964 
 
 
-
 
NC_009485  BBta_0652  two component LuxR family transcriptional regulator  58.9 
 
 
305 aa  331  8e-90  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.0800453  normal  0.813173 
 
 
-
 
NC_011004  Rpal_1441  two component transcriptional regulator, LuxR family  60.42 
 
 
308 aa  326  4.0000000000000003e-88  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_009620  Smed_4179  response regulator receiver protein  56.21 
 
 
309 aa  320  1.9999999999999998e-86  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.15819 
 
 
-
 
NC_007778  RPB_1250  two component LuxR family transcriptional regulator  58.33 
 
 
309 aa  320  1.9999999999999998e-86  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.886948  normal 
 
 
-
 
NC_011369  Rleg2_3066  two component transcriptional regulator, LuxR family  56.52 
 
 
305 aa  317  2e-85  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_3866  response regulator receiver  58.33 
 
 
309 aa  314  9.999999999999999e-85  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.370865  normal 
 
 
-
 
NC_012850  Rleg_3321  two component transcriptional regulator, LuxR family  55.18 
 
 
305 aa  312  4.999999999999999e-84  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.536368 
 
 
-
 
NC_011989  Avi_3499  transcriptional regulator LuxR family  56.03 
 
 
312 aa  302  5.000000000000001e-81  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_011666  Msil_2002  two component transcriptional regulator, LuxR family  53.54 
 
 
306 aa  298  1e-79  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_008740  Maqu_3869  response regulator receiver protein  50.34 
 
 
301 aa  285  5e-76  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_007912  Sde_2977  response regulator receiver domain-containing protein  48.46 
 
 
303 aa  283  2.0000000000000002e-75  Saccharophagus degradans 2-40  Bacteria  normal  normal  0.13601 
 
 
-
 
NC_009654  Mmwyl1_0962  response regulator receiver protein  51.16 
 
 
304 aa  274  1.0000000000000001e-72  Marinomonas sp. MWYL1  Bacteria  normal  0.512477  normal 
 
 
-
 
NC_011138  MADE_00878  two-component response regulator  46.2 
 
 
298 aa  267  2e-70  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_007794  Saro_1665  two component LuxR family transcriptional regulator  47.59 
 
 
307 aa  256  3e-67  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  n/a   
 
 
-
 
NC_008825  Mpe_A0671  two component LuxR family transcriptional regulator  48.83 
 
 
333 aa  254  2.0000000000000002e-66  Methylibium petroleiphilum PM1  Bacteria  normal  0.0205263  normal 
 
 
-
 
NC_008709  Ping_2984  two component transcriptional regulator, LuxR family protein  44.01 
 
 
295 aa  249  3e-65  Psychromonas ingrahamii 37  Bacteria  normal  0.43543  normal  0.546259 
 
 
-
 
NC_007298  Daro_1445  two component LuxR family transcriptional regulator  47.9 
 
 
308 aa  249  5e-65  Dechloromonas aromatica RCB  Bacteria  normal  0.446624  normal 
 
 
-
 
NC_007947  Mfla_1761  two component LuxR family transcriptional regulator  47.9 
 
 
311 aa  248  8e-65  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_008781  Pnap_0979  response regulator receiver protein  45.6 
 
 
336 aa  247  2e-64  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_3397  two component LuxR family transcriptional regulator  45.81 
 
 
328 aa  244  9.999999999999999e-64  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_4238  two component transcriptional regulator, LuxR family  43.15 
 
 
356 aa  243  3.9999999999999997e-63  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_008786  Veis_1731  response regulator receiver protein  46.13 
 
 
361 aa  241  7.999999999999999e-63  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.319975 
 
 
-
 
NC_008752  Aave_3524  two component LuxR family transcriptional regulator  46.54 
 
 
353 aa  238  6.999999999999999e-62  Acidovorax citrulli AAC00-1  Bacteria  normal  0.406085  normal  0.428998 
 
 
-
 
NC_008825  Mpe_A3585  two component LuxR family transcriptional regulator  48.6 
 
 
306 aa  237  2e-61  Methylibium petroleiphilum PM1  Bacteria  normal  0.295986  normal 
 
 
-
 
NC_012791  Vapar_3147  two component transcriptional regulator, LuxR family  49.12 
 
 
302 aa  236  4e-61  Variovorax paradoxus S110  Bacteria  normal  0.235206  n/a   
 
 
-
 
NC_007948  Bpro_1354  two component LuxR family transcriptional regulator  45.4 
 
 
349 aa  235  5.0000000000000005e-61  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_007948  Bpro_0562  two component LuxR family transcriptional regulator  47.9 
 
 
297 aa  235  8e-61  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_013422  Hneap_1587  two component transcriptional regulator, LuxR family  44.44 
 
 
292 aa  235  8e-61  Halothiobacillus neapolitanus c2  Bacteria  normal  0.522901  n/a   
 
 
-
 
NC_010524  Lcho_1083  two component LuxR family transcriptional regulator  47.85 
 
 
316 aa  234  2.0000000000000002e-60  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_010515  Bcenmc03_5666  two component LuxR family transcriptional regulator  42.62 
 
 
312 aa  231  8.000000000000001e-60  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.917296 
 
 
-
 
NC_010002  Daci_0218  two component LuxR family transcriptional regulator  43.49 
 
 
339 aa  231  1e-59  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_008061  Bcen_3730  two component LuxR family transcriptional regulator  42.28 
 
 
312 aa  230  3e-59  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008543  Bcen2424_4638  two component LuxR family transcriptional regulator  42.28 
 
 
312 aa  230  3e-59  Burkholderia cenocepacia HI2424  Bacteria  normal  normal 
 
 
-
 
NC_007952  Bxe_B1713  two component LuxR family transcriptional regulator  39.88 
 
 
361 aa  216  4e-55  Burkholderia xenovorans LB400  Bacteria  normal  0.310925  normal 
 
 
-
 
NC_010571  Oter_1720  two component LuxR family transcriptional regulator  36.72 
 
 
301 aa  163  4.0000000000000004e-39  Opitutus terrae PB90-1  Bacteria  normal  0.162572  normal  0.616267 
 
 
-
 
NC_004578  PSPTO_4080  DNA-binding response regulator, LuxR family  50 
 
 
222 aa  150  3e-35  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.542388  n/a   
 
 
-
 
NC_011884  Cyan7425_3210  response regulator receiver modulated diguanylate cyclase  54.31 
 
 
337 aa  134  1.9999999999999998e-30  Cyanothece sp. PCC 7425  Bacteria  normal  0.32327  normal  0.712325 
 
 
-
 
NC_007413  Ava_2562  response regulator receiver Signal transduction histidine kinase  51.22 
 
 
437 aa  132  6e-30  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_009767  Rcas_3134  response regulator receiver protein  45.22 
 
 
200 aa  132  7.999999999999999e-30  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_013440  Hoch_6548  response regulator receiver sensor signal transduction histidine kinase  52.14 
 
 
397 aa  131  1.0000000000000001e-29  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.543575 
 
 
-
 
NC_014248  Aazo_4465  response regulator receiver sensor signal transduction histidine kinase  50.41 
 
 
437 aa  130  2.0000000000000002e-29  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_2149  response regulator receiver Signal transduction histidine kinase  52.89 
 
 
407 aa  130  3e-29  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.142048 
 
 
-
 
NC_013730  Slin_2507  two component, sigma54 specific, transcriptional regulator, Fis family  50.81 
 
 
488 aa  128  1.0000000000000001e-28  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.182398 
 
 
-
 
NC_010814  Glov_1118  response regulator receiver sensor signal transduction histidine kinase  46.38 
 
 
452 aa  127  3e-28  Geobacter lovleyi SZ  Bacteria  hitchhiker  0.000972917  n/a   
 
 
-
 
NC_010571  Oter_0809  response regulator receiver sensor signal transduction histidine kinase  50.85 
 
 
367 aa  126  5e-28  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_4136  response regulator receiver Signal transduction histidine kinase  50.86 
 
 
440 aa  126  6e-28  Anabaena variabilis ATCC 29413  Bacteria  decreased coverage  0.00000660181  hitchhiker  0.00876613 
 
 
-
 
NC_011884  Cyan7425_0790  multi-sensor signal transduction histidine kinase  50 
 
 
566 aa  125  6e-28  Cyanothece sp. PCC 7425  Bacteria  normal  0.391268  normal 
 
 
-
 
NC_010625  Bphy_6559  multi-sensor signal transduction histidine kinase  52.07 
 
 
541 aa  124  1e-27  Burkholderia phymatum STM815  Bacteria  normal  normal  0.59439 
 
 
-
 
NC_010627  Bphy_7700  multi-sensor signal transduction histidine kinase  52.89 
 
 
541 aa  124  2e-27  Burkholderia phymatum STM815  Bacteria  normal  0.163324  normal  0.507763 
 
 
-
 
NC_013440  Hoch_2175  response regulator receiver sensor signal transduction histidine kinase  50 
 
 
395 aa  124  3e-27  Haliangium ochraceum DSM 14365  Bacteria  normal  0.924768  normal  0.400775 
 
 
-
 
NC_010676  Bphyt_6236  multi-sensor signal transduction histidine kinase  48.76 
 
 
553 aa  122  9.999999999999999e-27  Burkholderia phytofirmans PsJN  Bacteria  normal  normal  0.914679 
 
 
-
 
NC_007796  Mhun_1941  response regulator receiver domain-containing protein  49.57 
 
 
156 aa  120  3e-26  Methanospirillum hungatei JF-1  Archaea  normal  normal 
 
 
-
 
NC_010681  Bphyt_2397  two component transcriptional regulator, AraC family  47.2 
 
 
269 aa  120  3e-26  Burkholderia phytofirmans PsJN  Bacteria  normal  0.92999  normal  0.351016 
 
 
-
 
NC_008709  Ping_0978  response regulator receiver modulated diguanylate cyclase  36.04 
 
 
322 aa  120  3e-26  Psychromonas ingrahamii 37  Bacteria  normal  0.97362  decreased coverage  0.00116316 
 
 
-
 
NC_009012  Cthe_1826  response regulator receiver sensor signal transduction histidine kinase  41.73 
 
 
363 aa  119  7e-26  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_013522  Taci_0090  two component transcriptional regulator, winged helix family  37.7 
 
 
228 aa  118  9.999999999999999e-26  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  n/a   
 
 
-
 
NC_008312  Tery_4155  response regulator receiver sensor signal transduction histidine kinase  47.46 
 
 
440 aa  118  9.999999999999999e-26  Trichodesmium erythraeum IMS101  Bacteria  normal  0.50715  normal 
 
 
-
 
NC_011138  MADE_03429  two-component system response regulator (hybrid family) protein  39.66 
 
 
358 aa  117  1.9999999999999998e-25  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_2347  response regulator receiver protein  42.86 
 
 
202 aa  117  1.9999999999999998e-25  Roseiflexus sp. RS-1  Bacteria  normal  0.56815  normal 
 
 
-
 
NC_013216  Dtox_1577  response regulator receiver modulated diguanylate cyclase  43.65 
 
 
314 aa  117  3e-25  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_014248  Aazo_4229  response regulator receiver sensor signal transduction histidine kinase  47.86 
 
 
383 aa  117  3e-25  'Nostoc azollae' 0708  Bacteria  normal  0.599633  n/a   
 
 
-
 
NC_010002  Daci_1192  response regulator receiver modulated diguanylate cyclase  48.09 
 
 
316 aa  116  6e-25  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_011726  PCC8801_1350  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  36.26 
 
 
715 aa  115  7.999999999999999e-25  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013161  Cyan8802_1380  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  36.26 
 
 
715 aa  115  7.999999999999999e-25  Cyanothece sp. PCC 8802  Bacteria  normal  0.923401  normal 
 
 
-
 
NC_011146  Gbem_1228  response regulator receiver modulated diguanylate cyclase  42.07 
 
 
349 aa  115  8.999999999999998e-25  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_3242  response regulator receiver sensor signal transduction histidine kinase  45.69 
 
 
441 aa  115  1.0000000000000001e-24  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_009654  Mmwyl1_2382  response regulator receiver modulated metal dependent phosphohydrolase  43.97 
 
 
359 aa  115  1.0000000000000001e-24  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_011726  PCC8801_2743  response regulator receiver sensor signal transduction histidine kinase  38.52 
 
 
395 aa  114  2.0000000000000002e-24  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_010571  Oter_3794  response regulator receiver sensor signal transduction histidine kinase  43.66 
 
 
376 aa  114  2.0000000000000002e-24  Opitutus terrae PB90-1  Bacteria  normal  0.0277983  normal  0.543799 
 
 
-
 
NC_013161  Cyan8802_3359  response regulator receiver sensor signal transduction histidine kinase  38.52 
 
 
395 aa  114  2.0000000000000002e-24  Cyanothece sp. PCC 8802  Bacteria  normal  0.361398  normal 
 
 
-
 
NC_010551  BamMC406_1236  response regulator receiver sensor signal transduction histidine kinase  41.89 
 
 
386 aa  113  5e-24  Burkholderia ambifaria MC40-6  Bacteria  normal  0.493129  normal 
 
 
-
 
NC_011831  Cagg_1006  response regulator receiver modulated diguanylate cyclase  43.75 
 
 
312 aa  112  6e-24  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_2150  response regulator receiver Signal transduction histidine kinase  46.15 
 
 
443 aa  112  9e-24  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.394463 
 
 
-
 
NC_011729  PCC7424_0984  response regulator receiver modulated diguanylate cyclase  38.78 
 
 
353 aa  111  1.0000000000000001e-23  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.194443 
 
 
-
 
NC_010623  Bphy_4530  response regulator receiver sensor signal transduction histidine kinase  39.77 
 
 
386 aa  112  1.0000000000000001e-23  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_010571  Oter_3856  response regulator receiver sensor signal transduction histidine kinase  38.3 
 
 
378 aa  112  1.0000000000000001e-23  Opitutus terrae PB90-1  Bacteria  normal  normal  0.215089 
 
 
-
 
NC_008340  Mlg_2429  response regulator receiver modulated metal dependent phosphohydrolase  41.78 
 
 
480 aa  111  1.0000000000000001e-23  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal  0.129673 
 
 
-
 
NC_011146  Gbem_1018  response regulator receiver sensor signal transduction histidine kinase  40.6 
 
 
441 aa  112  1.0000000000000001e-23  Geobacter bemidjiensis Bem  Bacteria  hitchhiker  0.00729938  n/a   
 
 
-
 
NC_011726  PCC8801_1139  response regulator receiver modulated diguanylate cyclase  36.3 
 
 
308 aa  111  2.0000000000000002e-23  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_010557  BamMC406_6071  two component AraC family transcriptional regulator  44.17 
 
 
271 aa  110  2.0000000000000002e-23  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_013161  Cyan8802_0849  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  35.23 
 
 
593 aa  110  2.0000000000000002e-23  Cyanothece sp. PCC 8802  Bacteria  normal  0.386146  normal 
 
 
-
 
NC_013161  Cyan8802_1169  response regulator receiver modulated diguanylate cyclase  36.3 
 
 
308 aa  111  2.0000000000000002e-23  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_011726  PCC8801_0820  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  35.23 
 
 
593 aa  110  2.0000000000000002e-23  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_011729  PCC7424_2188  response regulator receiver sensor signal transduction histidine kinase  38.76 
 
 
384 aa  111  2.0000000000000002e-23  Cyanothece sp. PCC 7424  Bacteria  n/a    hitchhiker  0.00677544 
 
 
-
 
NC_007413  Ava_3976  response regulator receiver Signal transduction histidine kinase  45.83 
 
 
431 aa  110  3e-23  Anabaena variabilis ATCC 29413  Bacteria  normal  0.0119459  decreased coverage  0.00202838 
 
 
-
 
NC_007517  Gmet_2999  response regulator receiver (CheY-like) modulated metal dependent phosphohydrolase  43.09 
 
 
361 aa  110  3e-23  Geobacter metallireducens GS-15  Bacteria  normal  normal  0.669597 
 
 
-
 
NC_007298  Daro_0007  response regulator receiver modulated metal dependent phosphohydrolase  47.46 
 
 
379 aa  110  4.0000000000000004e-23  Dechloromonas aromatica RCB  Bacteria  normal  0.829613  normal  0.0284762 
 
 
-
 
NC_008392  Bamb_6368  two component AraC family transcriptional regulator  44.17 
 
 
271 aa  110  4.0000000000000004e-23  Burkholderia ambifaria AMMD  Bacteria  normal  0.434467  normal 
 
 
-
 
NC_009972  Haur_2725  two component transcriptional regulator  35.84 
 
 
226 aa  109  5e-23  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.0716975  n/a   
 
 
-
 
NC_008345  Sfri_2505  response regulator receiver modulated metal dependent phosphohydrolase  41.79 
 
 
331 aa  109  6e-23  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_014248  Aazo_5066  response regulator receiver modulated diguanylate cyclase  42.48 
 
 
338 aa  109  6e-23  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_013525  Tter_0789  response regulator receiver protein  44.72 
 
 
278 aa  108  1e-22  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_007509  Bcep18194_C7377  two component AraC family transcriptional regulator  44.72 
 
 
278 aa  107  2e-22  Burkholderia sp. 383  Bacteria  normal  0.0377301  normal  0.284562 
 
 
-
 
NC_012803  Mlut_04130  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  44.12 
 
 
236 aa  107  2e-22  Micrococcus luteus NCTC 2665  Bacteria  normal  0.118973  n/a   
 
 
-
 
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