More than 300 homologs were found in PanDaTox collection
for query gene PSPTO_4080 on replicon NC_004578
Organism: Pseudomonas syringae pv. tomato str. DC3000



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_004578  PSPTO_4080  DNA-binding response regulator, LuxR family  100 
 
 		 222 aa  457  9.999999999999999e-129  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.542388  n/a   
 
 
-
 
NC_007952  Bxe_B1713  two component LuxR family transcriptional regulator  62.6 
 
 		 361 aa  174  8e-43  Burkholderia xenovorans LB400  Bacteria  normal  0.310925  normal  1 
 
 
-
 
NC_007947  Mfla_1761  two component LuxR family transcriptional regulator  57.58 
 
 		 311 aa  168  6e-41  Methylobacillus flagellatus KT  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007958  RPD_3866  response regulator receiver  57.69 
 
 		 309 aa  167  1e-40  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.370865  normal  1 
 
 
-
 
NC_009485  BBta_0652  two component LuxR family transcriptional regulator  58.59 
 
 		 305 aa  164  8e-40  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.0800453  normal  0.813173 
 
 
-
 
NC_011004  Rpal_1441  two component transcriptional regulator, LuxR family  56.92 
 
 		 308 aa  163  2.0000000000000002e-39  Rhodopseudomonas palustris TIE-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_008781  Pnap_0979  response regulator receiver protein  49.07 
 
 		 336 aa  162  3e-39  Polaromonas naphthalenivorans CJ2  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007778  RPB_1250  two component LuxR family transcriptional regulator  55.38 
 
 		 309 aa  161  6e-39  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.886948  normal  1 
 
 
-
 
NC_008825  Mpe_A0671  two component LuxR family transcriptional regulator  55.15 
 
 		 333 aa  160  1e-38  Methylibium petroleiphilum PM1  Bacteria  normal  0.0205263  normal  1 
 
 
-
 
NC_010515  Bcenmc03_5666  two component LuxR family transcriptional regulator  61.16 
 
 		 312 aa  159  4e-38  Burkholderia cenocepacia MC0-3  Bacteria  normal  1  normal  0.917296 
 
 
-
 
NC_008061  Bcen_3730  two component LuxR family transcriptional regulator  61.16 
 
 		 312 aa  159  5e-38  Burkholderia cenocepacia AU 1054  Bacteria  normal  1  n/a   
 
 
-
 
NC_008543  Bcen2424_4638  two component LuxR family transcriptional regulator  61.16 
 
 		 312 aa  159  5e-38  Burkholderia cenocepacia HI2424  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010524  Lcho_1083  two component LuxR family transcriptional regulator  53.03 
 
 		 316 aa  157  1e-37  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  1 
 
 
-
 
NC_011989  Avi_3499  transcriptional regulator LuxR family  52.21 
 
 		 312 aa  157  1e-37  Agrobacterium vitis S4  Bacteria  normal  1  n/a   
 
 
-
 
NC_012791  Vapar_3147  two component transcriptional regulator, LuxR family  48.99 
 
 		 302 aa  156  2e-37  Variovorax paradoxus S110  Bacteria  normal  0.235206  n/a   
 
 
-
 
NC_008825  Mpe_A3585  two component LuxR family transcriptional regulator  46.67 
 
 		 306 aa  156  2e-37  Methylibium petroleiphilum PM1  Bacteria  normal  0.295986  normal  1 
 
 
-
 
NC_007948  Bpro_1354  two component LuxR family transcriptional regulator  49.33 
 
 		 349 aa  155  3e-37  Polaromonas sp. JS666  Bacteria  normal  1  normal  1 
 
 
-
 
NC_012791  Vapar_4238  two component transcriptional regulator, LuxR family  49.34 
 
 		 356 aa  155  3e-37  Variovorax paradoxus S110  Bacteria  normal  1  n/a   
 
 
-
 
NC_007912  Sde_2977  response regulator receiver domain-containing protein  51.45 
 
 		 303 aa  155  5.0000000000000005e-37  Saccharophagus degradans 2-40  Bacteria  normal  1  normal  0.13601 
 
 
-
 
NC_010581  Bind_0974  two component LuxR family transcriptional regulator  50 
 
 		 309 aa  154  1e-36  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.883175  normal  0.426964 
 
 
-
 
NC_008740  Maqu_3869  response regulator receiver protein  50.34 
 
 		 301 aa  153  2e-36  Marinobacter aquaeolei VT8  Bacteria  normal  1  n/a   
 
 
-
 
NC_008752  Aave_3524  two component LuxR family transcriptional regulator  50.34 
 
 		 353 aa  153  2e-36  Acidovorax citrulli AAC00-1  Bacteria  normal  0.406085  normal  0.428998 
 
 
-
 
NC_011369  Rleg2_3066  two component transcriptional regulator, LuxR family  51.52 
 
 		 305 aa  152  2.9999999999999998e-36  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011666  Msil_2002  two component transcriptional regulator, LuxR family  52.63 
 
 		 306 aa  151  7e-36  Methylocella silvestris BL2  Bacteria  n/a    normal  1 
 
 
-
 
NC_013440  Hoch_6548  response regulator receiver sensor signal transduction histidine kinase  58.06 
 
 		 397 aa  150  1e-35  Haliangium ochraceum DSM 14365  Bacteria  normal  1  normal  0.543575 
 
 
-
 
NC_013422  Hneap_1587  two component transcriptional regulator, LuxR family  49.62 
 
 		 292 aa  150  2e-35  Halothiobacillus neapolitanus c2  Bacteria  normal  0.522901  n/a   
 
 
-
 
NC_010511  M446_0591  two component LuxR family transcriptional regulator  51.97 
 
 		 301 aa  149  3e-35  Methylobacterium sp. 4-46  Bacteria  normal  0.477799  hitchhiker  0.00469436 
 
 
-
 
NC_009654  Mmwyl1_0962  response regulator receiver protein  52.99 
 
 		 304 aa  148  6e-35  Marinomonas sp. MWYL1  Bacteria  normal  0.512477  normal  1 
 
 
-
 
NC_007948  Bpro_0562  two component LuxR family transcriptional regulator  51.18 
 
 		 297 aa  148  8e-35  Polaromonas sp. JS666  Bacteria  normal  1  normal  1 
 
 
-
 
NC_012850  Rleg_3321  two component transcriptional regulator, LuxR family  49.61 
 
 		 305 aa  147  9e-35  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  1  normal  0.536368 
 
 
-
 
NC_007908  Rfer_3397  two component LuxR family transcriptional regulator  54.69 
 
 		 328 aa  147  1.0000000000000001e-34  Rhodoferax ferrireducens T118  Bacteria  normal  1  n/a   
 
 
-
 
NC_007413  Ava_2149  response regulator receiver Signal transduction histidine kinase  52.31 
 
 		 407 aa  146  2.0000000000000003e-34  Anabaena variabilis ATCC 29413  Bacteria  normal  1  normal  0.142048 
 
 
-
 
NC_011884  Cyan7425_0790  multi-sensor signal transduction histidine kinase  54.92 
 
 		 566 aa  146  3e-34  Cyanothece sp. PCC 7425  Bacteria  normal  0.391268  normal  1 
 
 
-
 
NC_011138  MADE_00878  two-component response regulator  41.27 
 
 		 298 aa  145  4.0000000000000006e-34  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  1  n/a   
 
 
-
 
NC_008786  Veis_1731  response regulator receiver protein  50.68 
 
 		 361 aa  145  4.0000000000000006e-34  Verminephrobacter eiseniae EF01-2  Bacteria  normal  1  normal  0.319975 
 
 
-
 
NC_013730  Slin_2507  two component, sigma54 specific, transcriptional regulator, Fis family  50.74 
 
 		 488 aa  144  7.0000000000000006e-34  Spirosoma linguale DSM 74  Bacteria  normal  1  normal  0.182398 
 
 
-
 
NC_007298  Daro_1445  two component LuxR family transcriptional regulator  54.41 
 
 		 308 aa  144  1e-33  Dechloromonas aromatica RCB  Bacteria  normal  0.446624  normal  1 
 
 
-
 
NC_009620  Smed_4179  response regulator receiver protein  48.82 
 
 		 309 aa  143  2e-33  Sinorhizobium medicae WSM419  Bacteria  normal  1  normal  0.15819 
 
 
-
 
NC_008709  Ping_2984  two component transcriptional regulator, LuxR family protein  49.29 
 
 		 295 aa  141  7e-33  Psychromonas ingrahamii 37  Bacteria  normal  0.43543  normal  0.546259 
 
 
-
 
NC_010625  Bphy_6559  multi-sensor signal transduction histidine kinase  56.78 
 
 		 541 aa  141  8e-33  Burkholderia phymatum STM815  Bacteria  normal  1  normal  0.59439 
 
 
-
 
NC_007413  Ava_2562  response regulator receiver Signal transduction histidine kinase  50.37 
 
 		 437 aa  140  1.9999999999999998e-32  Anabaena variabilis ATCC 29413  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010725  Mpop_3574  two component transcriptional regulator, LuxR family  49.59 
 
 		 301 aa  139  1.9999999999999998e-32  Methylobacterium populi BJ001  Bacteria  normal  0.0249095  normal  1 
 
 
-
 
NC_010505  Mrad2831_5514  two component LuxR family transcriptional regulator  47.97 
 
 		 305 aa  139  3.9999999999999997e-32  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  1  normal  0.211273 
 
 
-
 
NC_007413  Ava_2150  response regulator receiver Signal transduction histidine kinase  51.59 
 
 		 443 aa  139  4.999999999999999e-32  Anabaena variabilis ATCC 29413  Bacteria  normal  1  normal  0.394463 
 
 
-
 
NC_010571  Oter_0804  two component LuxR family transcriptional regulator  37.75 
 
 		 204 aa  139  4.999999999999999e-32  Opitutus terrae PB90-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010676  Bphyt_6236  multi-sensor signal transduction histidine kinase  51.22 
 
 		 553 aa  138  6e-32  Burkholderia phytofirmans PsJN  Bacteria  normal  1  normal  0.914679 
 
 
-
 
NC_010571  Oter_0809  response regulator receiver sensor signal transduction histidine kinase  55 
 
 		 367 aa  138  6e-32  Opitutus terrae PB90-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_014248  Aazo_4465  response regulator receiver sensor signal transduction histidine kinase  50.79 
 
 		 437 aa  137  1e-31  'Nostoc azollae' 0708  Bacteria  normal  1  n/a   
 
 
-
 
NC_010814  Glov_1118  response regulator receiver sensor signal transduction histidine kinase  51.15 
 
 		 452 aa  136  2e-31  Geobacter lovleyi SZ  Bacteria  hitchhiker  0.000972917  n/a   
 
 
-
 
NC_010627  Bphy_7700  multi-sensor signal transduction histidine kinase  55.17 
 
 		 541 aa  136  3.0000000000000003e-31  Burkholderia phymatum STM815  Bacteria  normal  0.163324  normal  0.507763 
 
 
-
 
NC_007794  Saro_1665  two component LuxR family transcriptional regulator  49.6 
 
 		 307 aa  136  3.0000000000000003e-31  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  1  n/a   
 
 
-
 
NC_011146  Gbem_1018  response regulator receiver sensor signal transduction histidine kinase  47.59 
 
 		 441 aa  136  3.0000000000000003e-31  Geobacter bemidjiensis Bem  Bacteria  hitchhiker  0.00729938  n/a   
 
 
-
 
NC_012918  GM21_3242  response regulator receiver sensor signal transduction histidine kinase  50 
 
 		 441 aa  135  5e-31  Geobacter sp. M21  Bacteria  n/a    normal  1 
 
 
-
 
NC_010002  Daci_0218  two component LuxR family transcriptional regulator  46.21 
 
 		 339 aa  135  7.000000000000001e-31  Delftia acidovorans SPH-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010172  Mext_3383  response regulator receiver  48.72 
 
 		 300 aa  134  9e-31  Methylobacterium extorquens PA1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011757  Mchl_3692  two component transcriptional regulator, LuxR family  48.72 
 
 		 300 aa  134  9e-31  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.170876  normal  1 
 
 
-
 
NC_013440  Hoch_2175  response regulator receiver sensor signal transduction histidine kinase  49.21 
 
 		 395 aa  134  9.999999999999999e-31  Haliangium ochraceum DSM 14365  Bacteria  normal  0.924768  normal  0.400775 
 
 
-
 
NC_011884  Cyan7425_3210  response regulator receiver modulated diguanylate cyclase  46.46 
 
 		 337 aa  134  1.9999999999999998e-30  Cyanothece sp. PCC 7425  Bacteria  normal  0.32327  normal  0.712325 
 
 
-
 
NC_010623  Bphy_4530  response regulator receiver sensor signal transduction histidine kinase  51.56 
 
 		 386 aa  133  1.9999999999999998e-30  Burkholderia phymatum STM815  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010551  BamMC406_1236  response regulator receiver sensor signal transduction histidine kinase  52.46 
 
 		 386 aa  133  3e-30  Burkholderia ambifaria MC40-6  Bacteria  normal  0.493129  normal  1 
 
 
-
 
NC_010571  Oter_1720  two component LuxR family transcriptional regulator  51.28 
 
 		 301 aa  131  9e-30  Opitutus terrae PB90-1  Bacteria  normal  0.162572  normal  0.616267 
 
 
-
 
NC_009012  Cthe_1826  response regulator receiver sensor signal transduction histidine kinase  43.26 
 
 		 363 aa  130  2.0000000000000002e-29  Clostridium thermocellum ATCC 27405  Bacteria  normal  1  n/a   
 
 
-
 
NC_009767  Rcas_3134  response regulator receiver protein  52.8 
 
 		 200 aa  130  2.0000000000000002e-29  Roseiflexus castenholzii DSM 13941  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007413  Ava_4136  response regulator receiver Signal transduction histidine kinase  46.34 
 
 		 440 aa  129  3e-29  Anabaena variabilis ATCC 29413  Bacteria  decreased coverage  0.00000660181  hitchhiker  0.00876613 
 
 
-
 
NC_008312  Tery_4155  response regulator receiver sensor signal transduction histidine kinase  53.39 
 
 		 440 aa  129  3e-29  Trichodesmium erythraeum IMS101  Bacteria  normal  0.50715  normal  1 
 
 
-
 
NC_014248  Aazo_4229  response regulator receiver sensor signal transduction histidine kinase  42.59 
 
 		 383 aa  129  3e-29  'Nostoc azollae' 0708  Bacteria  normal  0.599633  n/a   
 
 
-
 
NC_011726  PCC8801_2743  response regulator receiver sensor signal transduction histidine kinase  48.44 
 
 		 395 aa  129  4.0000000000000003e-29  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013161  Cyan8802_3359  response regulator receiver sensor signal transduction histidine kinase  48.44 
 
 		 395 aa  129  4.0000000000000003e-29  Cyanothece sp. PCC 8802  Bacteria  normal  0.361398  normal  1 
 
 
-
 
NC_009523  RoseRS_2347  response regulator receiver protein  51.2 
 
 		 202 aa  129  5.0000000000000004e-29  Roseiflexus sp. RS-1  Bacteria  normal  0.56815  normal  1 
 
 
-
 
NC_010682  Rpic_1673  two component transcriptional regulator, LuxR family  38.94 
 
 		 201 aa  129  5.0000000000000004e-29  Ralstonia pickettii 12J  Bacteria  normal  0.619826  normal  1 
 
 
-
 
NC_010682  Rpic_2943  two component transcriptional regulator, LuxR family  38.94 
 
 		 201 aa  129  5.0000000000000004e-29  Ralstonia pickettii 12J  Bacteria  normal  1  normal  1 
 
 
-
 
NC_014248  Aazo_1477  response regulator receiver modulated diguanylate cyclase  43.57 
 
 		 317 aa  127  1.0000000000000001e-28  'Nostoc azollae' 0708  Bacteria  normal  1  n/a   
 
 
-
 
NC_014248  Aazo_2887  LuxR family two component transcriptional regulator  33.8 
 
 		 225 aa  125  4.0000000000000003e-28  'Nostoc azollae' 0708  Bacteria  normal  0.526109  n/a   
 
 
-
 
NC_012856  Rpic12D_2528  two component transcriptional regulator, LuxR family  38.46 
 
 		 201 aa  125  4.0000000000000003e-28  Ralstonia pickettii 12D  Bacteria  normal  1  normal  0.0341229 
 
 
-
 
NC_008312  Tery_4323  two component LuxR family transcriptional regulator  33.65 
 
 		 215 aa  125  4.0000000000000003e-28  Trichodesmium erythraeum IMS101  Bacteria  normal  0.115662  normal  0.727411 
 
 
-
 
NC_010683  Rpic_4984  two component transcriptional regulator, LuxR family  38.46 
 
 		 201 aa  125  4.0000000000000003e-28  Ralstonia pickettii 12J  Bacteria  normal  1  normal  0.0145131 
 
 
-
 
NC_009901  Spea_0629  response regulator receiver modulated metal dependent phosphohydrolase  49.17 
 
 		 339 aa  125  6e-28  Shewanella pealeana ATCC 700345  Bacteria  normal  1  n/a   
 
 
-
 
NC_011726  PCC8801_1139  response regulator receiver modulated diguanylate cyclase  44.7 
 
 		 308 aa  125  7e-28  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013161  Cyan8802_1169  response regulator receiver modulated diguanylate cyclase  44.7 
 
 		 308 aa  125  7e-28  Cyanothece sp. PCC 8802  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009997  Sbal195_0871  response regulator receiver modulated metal dependent phosphohydrolase  49.17 
 
 		 338 aa  124  8.000000000000001e-28  Shewanella baltica OS195  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009665  Shew185_0836  response regulator receiver modulated metal dependent phosphohydrolase  49.17 
 
 		 338 aa  124  9e-28  Shewanella baltica OS185  Bacteria  normal  1  n/a   
 
 
-
 
NC_007413  Ava_3628  two component LuxR family transcriptional regulator  33.8 
 
 		 225 aa  124  9e-28  Anabaena variabilis ATCC 29413  Bacteria  normal  0.717242  normal  0.142765 
 
 
-
 
NC_009438  Sputcn32_3141  response regulator receiver modulated metal dependent phosphohydrolase  50 
 
 		 338 aa  124  1e-27  Shewanella putrefaciens CN-32  Bacteria  normal  1  n/a   
 
 
-
 
NC_009052  Sbal_3504  response regulator receiver modulated metal dependent phosphohydrolase  49.17 
 
 		 338 aa  124  1e-27  Shewanella baltica OS155  Bacteria  normal  1  n/a   
 
 
-
 
NC_008321  Shewmr4_0716  response regulator receiver modulated metal dependent phosphohydrolase  50 
 
 		 338 aa  124  1e-27  Shewanella sp. MR-4  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009485  BBta_1549  LuxR transcriptional regulator  37.56 
 
 		 201 aa  124  1e-27  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.355184  normal  0.152747 
 
 
-
 
NC_008322  Shewmr7_3306  response regulator receiver modulated metal dependent phosphohydrolase  50 
 
 		 338 aa  124  1e-27  Shewanella sp. MR-7  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011663  Sbal223_0859  response regulator receiver modulated metal dependent phosphohydrolase  49.17 
 
 		 338 aa  124  1e-27  Shewanella baltica OS223  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008554  Sfum_2303  response regulator receiver protein  43.12 
 
 		 227 aa  124  1e-27  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008577  Shewana3_3418  response regulator receiver modulated metal dependent phosphohydrolase  50 
 
 		 338 aa  124  1e-27  Shewanella sp. ANA-3  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009092  Shew_3199  response regulator receiver modulated metal dependent phosphohydrolase  48.33 
 
 		 339 aa  123  2e-27  Shewanella loihica PV-4  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011726  PCC8801_1580  two component transcriptional regulator, LuxR family  34.12 
 
 		 216 aa  123  2e-27  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013161  Cyan8802_1605  two component transcriptional regulator, LuxR family  34.12 
 
 		 216 aa  123  2e-27  Cyanothece sp. PCC 8802  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011729  PCC7424_0178  response regulator receiver modulated diguanylate cyclase  45.08 
 
 		 322 aa  122  5e-27  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.895619 
 
 
-
 
NC_004347  SO_0860  response regulator  49.17 
 
 		 339 aa  122  6e-27  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_007413  Ava_1562  response regulator receiver Signal transduction histidine kinase  46.15 
 
 		 369 aa  120  1.9999999999999998e-26  Anabaena variabilis ATCC 29413  Bacteria  normal  0.847548  normal  0.236297 
 
 
-
 
NC_012560  Avin_29300  Response regulator  41.46 
 
 		 310 aa  120  1.9999999999999998e-26  Azotobacter vinelandii DJ  Bacteria  normal  1  n/a   
 
 
-
 
NC_014248  Aazo_0932  response regulator receiver sensor signal transduction histidine kinase  46.32 
 
 		 374 aa  119  3e-26  'Nostoc azollae' 0708  Bacteria  normal  1  n/a   
 
 
-
 
NC_008700  Sama_2951  response regulator receiver protein  47.5 
 
 		 340 aa  119  3.9999999999999996e-26  Shewanella amazonensis SB2B  Bacteria  normal  1  normal  0.129077 
 
 
-
 
NC_011884  Cyan7425_0981  two component transcriptional regulator, LuxR family  35.1 
 
 		 221 aa  119  3.9999999999999996e-26  Cyanothece sp. PCC 7425  Bacteria  normal  1  normal  0.416641 
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>