| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_2505 |
|---|
| Symbol | |
|---|
| ID | 4279415 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | + |
|---|
| Start bp | 3000193 |
|---|
| End bp | 3001188 |
|---|
| Gene Length | 996 bp |
|---|
| Protein Length | 331 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 638135301 |
|---|
| Product | response regulator receiver modulated metal dependent phosphohydrolase |
|---|
| Protein accession | YP_751187 |
|---|
| Protein GI | 114563674 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG3437] Response regulator containing a CheY-like receiver domain and an HD-GYP domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATATATA GCAACCAAGA TCGTATGCCG ACAATTCTTA TTGTCGACGA TGAACCCGCT
AACCTCAGAG TGTTAAAGAA AATGCTTGAG GATCAGTACA GGCTGATTTT TGCTAAAAGT
GGCGAAGAAG CCTTGCGTTT AATTGAACGC GACTTGCCGG ATTTGATTTT ACTCGATGTG
ATGATGCCGG GTATGACTGG TTTTGAAGTC TGCCAGCAAC TTAAAACTGT GCAACGCACC
AAAGCGGTAC CAGTCATTTT TATCACGGCG TTAAGTGACG AAGTGGATGA GGCTAAAGGC
TTTGATGTGG GCGCGGTAGA CTACATTACT AAACCCGTGT CACCTGCGGT GGTTAAAGCA
CGTGTTCGTA CTCATTTGTC TTTAGTGCAA GCTGAAGACT TGCGCCGTAC ACGCTTACAA
GTCATTCAAC GTTTAGGCCG TGCATCTGAA TACAAAGACA ACGAAACCGG TATGCATGTG
ATGCGCATGA GCCATTTTTC TAAAATTATT GCCCTTGCTT ATGGTTTATC AAAATCGGCC
GCCGACAATT TACTCCATGC AGCACCAATG CACGATATTG GTAAAATTGG TATTCCCGAC
AGCATTATGC TTAAACCGGG TAAGCTCACC GATGAAGAAT TTGCCATCAT GAAAAAGCAC
CCTGAAATCG GCGCCGAAAT TCTAGGTGAA TCAGATTCAG ATTTGATCGC CTTAGCCAAA
GTCGTCGCCA TGACTCACCA CGAAAAGTGG GATGGTAGCG GCTACCCTCA TGGACTTAAA
GGTGAAGATA TTCCTATTGA AGGACGTATT GTGGCAATTG CCGACGTATT TGATGCTCTC
ACCAGCAAAC GCCCTTACAA AGAAGCATGG ACTGTCGACA AAGCCATGGC ATTTTTACAT
GACCAAAGCG GCATACATTT TGACCCGCAG TTAGTGACAC TATTTCAGCA ATCTTTGCCC
AGCATTTTAT ACATTAAGCA ACGCTGGCAA GACTAA
|
|---|
| Protein sequence | MIYSNQDRMP TILIVDDEPA NLRVLKKMLE DQYRLIFAKS GEEALRLIER DLPDLILLDV
MMPGMTGFEV CQQLKTVQRT KAVPVIFITA LSDEVDEAKG FDVGAVDYIT KPVSPAVVKA
RVRTHLSLVQ AEDLRRTRLQ VIQRLGRASE YKDNETGMHV MRMSHFSKII ALAYGLSKSA
ADNLLHAAPM HDIGKIGIPD SIMLKPGKLT DEEFAIMKKH PEIGAEILGE SDSDLIALAK
VVAMTHHEKW DGSGYPHGLK GEDIPIEGRI VAIADVFDAL TSKRPYKEAW TVDKAMAFLH
DQSGIHFDPQ LVTLFQQSLP SILYIKQRWQ D
|
|---|
| |