More than 300 homologs were found in PanDaTox collection
for query gene Ping_2984 on replicon NC_008709
Organism: Psychromonas ingrahamii 37



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008709  Ping_2984  two component transcriptional regulator, LuxR family protein  100 
 
 
295 aa  610  1e-173  Psychromonas ingrahamii 37  Bacteria  normal  0.43543  normal  0.546259 
 
 
-
 
NC_011138  MADE_00878  two-component response regulator  68.81 
 
 
298 aa  419  1e-116  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_007912  Sde_2977  response regulator receiver domain-containing protein  49.49 
 
 
303 aa  286  4e-76  Saccharophagus degradans 2-40  Bacteria  normal  normal  0.13601 
 
 
-
 
NC_009654  Mmwyl1_0962  response regulator receiver protein  47.57 
 
 
304 aa  272  6e-72  Marinomonas sp. MWYL1  Bacteria  normal  0.512477  normal 
 
 
-
 
NC_010581  Bind_0974  two component LuxR family transcriptional regulator  45.1 
 
 
309 aa  260  2e-68  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.883175  normal  0.426964 
 
 
-
 
NC_009485  BBta_0652  two component LuxR family transcriptional regulator  47.44 
 
 
305 aa  257  2e-67  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.0800453  normal  0.813173 
 
 
-
 
NC_007958  RPD_3866  response regulator receiver  47.2 
 
 
309 aa  254  2.0000000000000002e-66  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.370865  normal 
 
 
-
 
NC_008740  Maqu_3869  response regulator receiver protein  47.19 
 
 
301 aa  251  8.000000000000001e-66  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_1250  two component LuxR family transcriptional regulator  46.15 
 
 
309 aa  249  4e-65  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.886948  normal 
 
 
-
 
NC_011004  Rpal_1441  two component transcriptional regulator, LuxR family  45.8 
 
 
308 aa  247  1e-64  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_5514  two component LuxR family transcriptional regulator  45.79 
 
 
305 aa  247  2e-64  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.211273 
 
 
-
 
NC_010511  M446_0591  two component LuxR family transcriptional regulator  44.19 
 
 
301 aa  243  3.9999999999999997e-63  Methylobacterium sp. 4-46  Bacteria  normal  0.477799  hitchhiker  0.00469436 
 
 
-
 
NC_010172  Mext_3383  response regulator receiver  45.18 
 
 
300 aa  240  2e-62  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_009620  Smed_4179  response regulator receiver protein  42.05 
 
 
309 aa  239  2.9999999999999997e-62  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.15819 
 
 
-
 
NC_011757  Mchl_3692  two component transcriptional regulator, LuxR family  45.18 
 
 
300 aa  240  2.9999999999999997e-62  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.170876  normal 
 
 
-
 
NC_010725  Mpop_3574  two component transcriptional regulator, LuxR family  44.01 
 
 
301 aa  239  4e-62  Methylobacterium populi BJ001  Bacteria  normal  0.0249095  normal 
 
 
-
 
NC_011369  Rleg2_3066  two component transcriptional regulator, LuxR family  41.58 
 
 
305 aa  235  8e-61  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_3321  two component transcriptional regulator, LuxR family  40.79 
 
 
305 aa  233  2.0000000000000002e-60  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.536368 
 
 
-
 
NC_013422  Hneap_1587  two component transcriptional regulator, LuxR family  41.64 
 
 
292 aa  231  8.000000000000001e-60  Halothiobacillus neapolitanus c2  Bacteria  normal  0.522901  n/a   
 
 
-
 
NC_011666  Msil_2002  two component transcriptional regulator, LuxR family  41.28 
 
 
306 aa  229  4e-59  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_011989  Avi_3499  transcriptional regulator LuxR family  40.89 
 
 
312 aa  226  3e-58  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_008825  Mpe_A0671  two component LuxR family transcriptional regulator  43.56 
 
 
333 aa  220  3e-56  Methylibium petroleiphilum PM1  Bacteria  normal  0.0205263  normal 
 
 
-
 
NC_010002  Daci_0218  two component LuxR family transcriptional regulator  39.24 
 
 
339 aa  209  6e-53  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_010524  Lcho_1083  two component LuxR family transcriptional regulator  40.38 
 
 
316 aa  206  5e-52  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_012791  Vapar_3147  two component transcriptional regulator, LuxR family  42.35 
 
 
302 aa  205  8e-52  Variovorax paradoxus S110  Bacteria  normal  0.235206  n/a   
 
 
-
 
NC_008786  Veis_1731  response regulator receiver protein  38.74 
 
 
361 aa  202  4e-51  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.319975 
 
 
-
 
NC_007947  Mfla_1761  two component LuxR family transcriptional regulator  40.21 
 
 
311 aa  202  5e-51  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_007948  Bpro_0562  two component LuxR family transcriptional regulator  43.66 
 
 
297 aa  201  9.999999999999999e-51  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_008752  Aave_3524  two component LuxR family transcriptional regulator  41.1 
 
 
353 aa  201  1.9999999999999998e-50  Acidovorax citrulli AAC00-1  Bacteria  normal  0.406085  normal  0.428998 
 
 
-
 
NC_007948  Bpro_1354  two component LuxR family transcriptional regulator  40.12 
 
 
349 aa  201  1.9999999999999998e-50  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_008825  Mpe_A3585  two component LuxR family transcriptional regulator  42.61 
 
 
306 aa  199  3.9999999999999996e-50  Methylibium petroleiphilum PM1  Bacteria  normal  0.295986  normal 
 
 
-
 
NC_008781  Pnap_0979  response regulator receiver protein  39.81 
 
 
336 aa  199  6e-50  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_012791  Vapar_4238  two component transcriptional regulator, LuxR family  38.14 
 
 
356 aa  194  1e-48  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_3397  two component LuxR family transcriptional regulator  41.67 
 
 
328 aa  194  1e-48  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_1445  two component LuxR family transcriptional regulator  41.81 
 
 
308 aa  194  2e-48  Dechloromonas aromatica RCB  Bacteria  normal  0.446624  normal 
 
 
-
 
NC_010515  Bcenmc03_5666  two component LuxR family transcriptional regulator  38.91 
 
 
312 aa  191  1e-47  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.917296 
 
 
-
 
NC_007794  Saro_1665  two component LuxR family transcriptional regulator  37.07 
 
 
307 aa  191  1e-47  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  n/a   
 
 
-
 
NC_008061  Bcen_3730  two component LuxR family transcriptional regulator  38.91 
 
 
312 aa  191  2e-47  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008543  Bcen2424_4638  two component LuxR family transcriptional regulator  38.91 
 
 
312 aa  191  2e-47  Burkholderia cenocepacia HI2424  Bacteria  normal  normal 
 
 
-
 
NC_010571  Oter_1720  two component LuxR family transcriptional regulator  35.22 
 
 
301 aa  157  2e-37  Opitutus terrae PB90-1  Bacteria  normal  0.162572  normal  0.616267 
 
 
-
 
NC_007952  Bxe_B1713  two component LuxR family transcriptional regulator  47.3 
 
 
361 aa  143  4e-33  Burkholderia xenovorans LB400  Bacteria  normal  0.310925  normal 
 
 
-
 
NC_004578  PSPTO_4080  DNA-binding response regulator, LuxR family  49.29 
 
 
222 aa  141  9.999999999999999e-33  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.542388  n/a   
 
 
-
 
NC_013440  Hoch_6548  response regulator receiver sensor signal transduction histidine kinase  50.78 
 
 
397 aa  133  3e-30  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.543575 
 
 
-
 
NC_007413  Ava_2562  response regulator receiver Signal transduction histidine kinase  53.28 
 
 
437 aa  131  1.0000000000000001e-29  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_013440  Hoch_2175  response regulator receiver sensor signal transduction histidine kinase  52.07 
 
 
395 aa  129  8.000000000000001e-29  Haliangium ochraceum DSM 14365  Bacteria  normal  0.924768  normal  0.400775 
 
 
-
 
NC_011884  Cyan7425_3210  response regulator receiver modulated diguanylate cyclase  50.81 
 
 
337 aa  128  1.0000000000000001e-28  Cyanothece sp. PCC 7425  Bacteria  normal  0.32327  normal  0.712325 
 
 
-
 
NC_010627  Bphy_7700  multi-sensor signal transduction histidine kinase  52.07 
 
 
541 aa  128  1.0000000000000001e-28  Burkholderia phymatum STM815  Bacteria  normal  0.163324  normal  0.507763 
 
 
-
 
NC_007413  Ava_2149  response regulator receiver Signal transduction histidine kinase  37.08 
 
 
407 aa  127  3e-28  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.142048 
 
 
-
 
NC_014248  Aazo_4465  response regulator receiver sensor signal transduction histidine kinase  51.64 
 
 
437 aa  126  4.0000000000000003e-28  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_010625  Bphy_6559  multi-sensor signal transduction histidine kinase  50.41 
 
 
541 aa  125  6e-28  Burkholderia phymatum STM815  Bacteria  normal  normal  0.59439 
 
 
-
 
NC_010571  Oter_0809  response regulator receiver sensor signal transduction histidine kinase  47.58 
 
 
367 aa  125  1e-27  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
NC_011726  PCC8801_2743  response regulator receiver sensor signal transduction histidine kinase  39.67 
 
 
395 aa  122  7e-27  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013161  Cyan8802_3359  response regulator receiver sensor signal transduction histidine kinase  39.67 
 
 
395 aa  122  7e-27  Cyanothece sp. PCC 8802  Bacteria  normal  0.361398  normal 
 
 
-
 
NC_009767  Rcas_3134  response regulator receiver protein  39.18 
 
 
200 aa  120  1.9999999999999998e-26  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_009092  Shew_3199  response regulator receiver modulated metal dependent phosphohydrolase  51.72 
 
 
339 aa  119  7.999999999999999e-26  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_010676  Bphyt_6236  multi-sensor signal transduction histidine kinase  49.14 
 
 
553 aa  118  9e-26  Burkholderia phytofirmans PsJN  Bacteria  normal  normal  0.914679 
 
 
-
 
NC_013216  Dtox_1577  response regulator receiver modulated diguanylate cyclase  49.17 
 
 
314 aa  118  9.999999999999999e-26  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_008312  Tery_4155  response regulator receiver sensor signal transduction histidine kinase  47.24 
 
 
440 aa  118  9.999999999999999e-26  Trichodesmium erythraeum IMS101  Bacteria  normal  0.50715  normal 
 
 
-
 
NC_011729  PCC7424_2188  response regulator receiver sensor signal transduction histidine kinase  46.4 
 
 
384 aa  118  9.999999999999999e-26  Cyanothece sp. PCC 7424  Bacteria  n/a    hitchhiker  0.00677544 
 
 
-
 
NC_008554  Sfum_2303  response regulator receiver protein  45.67 
 
 
227 aa  118  9.999999999999999e-26  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_010623  Bphy_4530  response regulator receiver sensor signal transduction histidine kinase  42.31 
 
 
386 aa  117  1.9999999999999998e-25  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_4136  response regulator receiver Signal transduction histidine kinase  46.83 
 
 
440 aa  117  3e-25  Anabaena variabilis ATCC 29413  Bacteria  decreased coverage  0.00000660181  hitchhiker  0.00876613 
 
 
-
 
NC_011884  Cyan7425_0790  multi-sensor signal transduction histidine kinase  45.67 
 
 
566 aa  117  3e-25  Cyanothece sp. PCC 7425  Bacteria  normal  0.391268  normal 
 
 
-
 
NC_008700  Sama_2951  response regulator receiver protein  50.86 
 
 
340 aa  117  3e-25  Shewanella amazonensis SB2B  Bacteria  normal  normal  0.129077 
 
 
-
 
NC_009523  RoseRS_2347  response regulator receiver protein  38.97 
 
 
202 aa  116  3.9999999999999997e-25  Roseiflexus sp. RS-1  Bacteria  normal  0.56815  normal 
 
 
-
 
NC_010551  BamMC406_1236  response regulator receiver sensor signal transduction histidine kinase  45.67 
 
 
386 aa  115  6.9999999999999995e-25  Burkholderia ambifaria MC40-6  Bacteria  normal  0.493129  normal 
 
 
-
 
NC_009654  Mmwyl1_0356  response regulator receiver modulated metal dependent phosphohydrolase  38.62 
 
 
360 aa  115  6.9999999999999995e-25  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_011831  Cagg_1006  response regulator receiver modulated diguanylate cyclase  39.87 
 
 
312 aa  115  7.999999999999999e-25  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_009901  Spea_0629  response regulator receiver modulated metal dependent phosphohydrolase  50 
 
 
339 aa  115  1.0000000000000001e-24  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_014248  Aazo_4229  response regulator receiver sensor signal transduction histidine kinase  41.78 
 
 
383 aa  115  1.0000000000000001e-24  'Nostoc azollae' 0708  Bacteria  normal  0.599633  n/a   
 
 
-
 
NC_011726  PCC8801_1483  response regulator receiver sensor signal transduction histidine kinase  45.45 
 
 
374 aa  115  1.0000000000000001e-24  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013161  Cyan8802_1510  response regulator receiver sensor signal transduction histidine kinase  45.45 
 
 
374 aa  115  1.0000000000000001e-24  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_010814  Glov_1118  response regulator receiver sensor signal transduction histidine kinase  44.96 
 
 
452 aa  114  2.0000000000000002e-24  Geobacter lovleyi SZ  Bacteria  hitchhiker  0.000972917  n/a   
 
 
-
 
NC_009953  Sare_2277  two component transcriptional regulator  44.35 
 
 
248 aa  114  2.0000000000000002e-24  Salinispora arenicola CNS-205  Bacteria  normal  0.113906  normal  0.0109188 
 
 
-
 
NC_011729  PCC7424_0984  response regulator receiver modulated diguanylate cyclase  46.55 
 
 
353 aa  114  3e-24  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.194443 
 
 
-
 
NC_013730  Slin_2507  two component, sigma54 specific, transcriptional regulator, Fis family  46.46 
 
 
488 aa  113  4.0000000000000004e-24  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.182398 
 
 
-
 
NC_007520  Tcr_2179  response regulator receiver (CheY-like) modulated metal dependent phosphohydrolase  45.3 
 
 
348 aa  113  5e-24  Thiomicrospira crunogena XCL-2  Bacteria  normal  0.378064  n/a   
 
 
-
 
NC_007413  Ava_0124  response regulator receiver Signal transduction histidine kinase  47.41 
 
 
470 aa  112  8.000000000000001e-24  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_011884  Cyan7425_2947  multi-sensor signal transduction histidine kinase  44 
 
 
503 aa  110  2.0000000000000002e-23  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_009380  Strop_2130  response regulator receiver  43.55 
 
 
252 aa  110  2.0000000000000002e-23  Salinispora tropica CNB-440  Bacteria  normal  0.539517  hitchhiker  0.00279069 
 
 
-
 
NC_012918  GM21_3242  response regulator receiver sensor signal transduction histidine kinase  43.31 
 
 
441 aa  110  3e-23  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_008009  Acid345_4060  response regulator receiver modulated metal dependent phosphohydrolase  44.83 
 
 
365 aa  110  4.0000000000000004e-23  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal  0.0748941 
 
 
-
 
NC_010506  Swoo_2978  response regulator receiver modulated metal dependent phosphohydrolase  45.76 
 
 
369 aa  109  5e-23  Shewanella woodyi ATCC 51908  Bacteria  normal  normal  0.806511 
 
 
-
 
NC_008577  Shewana3_0479  response regulator receiver modulated metal dependent phosphohydrolase  47.66 
 
 
350 aa  109  5e-23  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_011146  Gbem_1018  response regulator receiver sensor signal transduction histidine kinase  40.15 
 
 
441 aa  109  5e-23  Geobacter bemidjiensis Bem  Bacteria  hitchhiker  0.00729938  n/a   
 
 
-
 
NC_007413  Ava_1030  response regulator receiver modulated diguanylate cyclase  44.26 
 
 
330 aa  109  6e-23  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.33399 
 
 
-
 
NC_011138  MADE_03429  two-component system response regulator (hybrid family) protein  46.83 
 
 
358 aa  109  6e-23  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_3523  response regulator receiver modulated metal dependent phosphohydrolase  46.67 
 
 
363 aa  109  6e-23  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_008709  Ping_0978  response regulator receiver modulated diguanylate cyclase  45.3 
 
 
322 aa  109  6e-23  Psychromonas ingrahamii 37  Bacteria  normal  0.97362  decreased coverage  0.00116316 
 
 
-
 
NC_011726  PCC8801_1350  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  38.52 
 
 
715 aa  109  7.000000000000001e-23  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013161  Cyan8802_1380  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  38.52 
 
 
715 aa  108  7.000000000000001e-23  Cyanothece sp. PCC 8802  Bacteria  normal  0.923401  normal 
 
 
-
 
NC_013161  Cyan8802_1169  response regulator receiver modulated diguanylate cyclase  35.43 
 
 
308 aa  108  1e-22  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_011726  PCC8801_1139  response regulator receiver modulated diguanylate cyclase  35.43 
 
 
308 aa  108  1e-22  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013522  Taci_1373  response regulator receiver modulated metal dependent phosphohydrolase  46.15 
 
 
365 aa  107  2e-22  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  n/a   
 
 
-
 
NC_009438  Sputcn32_3141  response regulator receiver modulated metal dependent phosphohydrolase  46.55 
 
 
338 aa  107  2e-22  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_008322  Shewmr7_3306  response regulator receiver modulated metal dependent phosphohydrolase  45.69 
 
 
338 aa  107  2e-22  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_008345  Sfri_2505  response regulator receiver modulated metal dependent phosphohydrolase  40.76 
 
 
331 aa  107  2e-22  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_008392  Bamb_6198  two component AraC family transcriptional regulator  45 
 
 
277 aa  107  2e-22  Burkholderia ambifaria AMMD  Bacteria  normal  normal 
 
 
-
 
NC_009012  Cthe_1826  response regulator receiver sensor signal transduction histidine kinase  40.56 
 
 
363 aa  107  2e-22  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_008577  Shewana3_3418  response regulator receiver modulated metal dependent phosphohydrolase  45.69 
 
 
338 aa  107  2e-22  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
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