More than 300 homologs were found in PanDaTox collection
for query gene Rcas_3134 on replicon NC_009767
Organism: Roseiflexus castenholzii DSM 13941



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009767  Rcas_3134  response regulator receiver protein  100 
 
 
200 aa  412  1e-114  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_009523  RoseRS_2347  response regulator receiver protein  82.5 
 
 
202 aa  345  2e-94  Roseiflexus sp. RS-1  Bacteria  normal  0.56815  normal 
 
 
-
 
NC_008609  Ppro_2062  response regulator receiver protein  48.7 
 
 
217 aa  191  7e-48  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_0378  response regulator receiver protein  46.63 
 
 
204 aa  182  2.0000000000000003e-45  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_0360  response regulator receiver protein  48.13 
 
 
204 aa  182  4.0000000000000006e-45  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.0000726536 
 
 
-
 
NC_013730  Slin_2507  two component, sigma54 specific, transcriptional regulator, Fis family  53.38 
 
 
488 aa  163  2.0000000000000002e-39  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.182398 
 
 
-
 
NC_011884  Cyan7425_0790  multi-sensor signal transduction histidine kinase  57.46 
 
 
566 aa  161  6e-39  Cyanothece sp. PCC 7425  Bacteria  normal  0.391268  normal 
 
 
-
 
NC_008554  Sfum_2303  response regulator receiver protein  41.06 
 
 
227 aa  161  6e-39  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_2149  response regulator receiver Signal transduction histidine kinase  54.55 
 
 
407 aa  157  1e-37  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.142048 
 
 
-
 
NC_013440  Hoch_6548  response regulator receiver sensor signal transduction histidine kinase  53.42 
 
 
397 aa  155  4e-37  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.543575 
 
 
-
 
NC_011146  Gbem_0799  response regulator receiver protein  40.2 
 
 
225 aa  152  2e-36  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_0846  response regulator receiver protein  39.7 
 
 
225 aa  151  5e-36  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_010571  Oter_0809  response regulator receiver sensor signal transduction histidine kinase  54.81 
 
 
367 aa  149  2e-35  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
NC_010676  Bphyt_6236  multi-sensor signal transduction histidine kinase  56.35 
 
 
553 aa  148  4e-35  Burkholderia phytofirmans PsJN  Bacteria  normal  normal  0.914679 
 
 
-
 
NC_010627  Bphy_7700  multi-sensor signal transduction histidine kinase  47.65 
 
 
541 aa  147  7e-35  Burkholderia phymatum STM815  Bacteria  normal  0.163324  normal  0.507763 
 
 
-
 
NC_007413  Ava_2562  response regulator receiver Signal transduction histidine kinase  53.79 
 
 
437 aa  147  1.0000000000000001e-34  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_011884  Cyan7425_3210  response regulator receiver modulated diguanylate cyclase  50.75 
 
 
337 aa  146  2.0000000000000003e-34  Cyanothece sp. PCC 7425  Bacteria  normal  0.32327  normal  0.712325 
 
 
-
 
NC_008312  Tery_4155  response regulator receiver sensor signal transduction histidine kinase  54.79 
 
 
440 aa  146  2.0000000000000003e-34  Trichodesmium erythraeum IMS101  Bacteria  normal  0.50715  normal 
 
 
-
 
NC_010625  Bphy_6559  multi-sensor signal transduction histidine kinase  47.34 
 
 
541 aa  145  6e-34  Burkholderia phymatum STM815  Bacteria  normal  normal  0.59439 
 
 
-
 
NC_010571  Oter_1720  two component LuxR family transcriptional regulator  51.16 
 
 
301 aa  144  6e-34  Opitutus terrae PB90-1  Bacteria  normal  0.162572  normal  0.616267 
 
 
-
 
NC_014248  Aazo_4465  response regulator receiver sensor signal transduction histidine kinase  53.12 
 
 
437 aa  141  6e-33  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_4136  response regulator receiver Signal transduction histidine kinase  52.24 
 
 
440 aa  140  8e-33  Anabaena variabilis ATCC 29413  Bacteria  decreased coverage  0.00000660181  hitchhiker  0.00876613 
 
 
-
 
NC_010623  Bphy_4530  response regulator receiver sensor signal transduction histidine kinase  44.24 
 
 
386 aa  140  9.999999999999999e-33  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_013440  Hoch_2175  response regulator receiver sensor signal transduction histidine kinase  53.28 
 
 
395 aa  139  1.9999999999999998e-32  Haliangium ochraceum DSM 14365  Bacteria  normal  0.924768  normal  0.400775 
 
 
-
 
NC_007952  Bxe_B1713  two component LuxR family transcriptional regulator  45.96 
 
 
361 aa  139  3e-32  Burkholderia xenovorans LB400  Bacteria  normal  0.310925  normal 
 
 
-
 
NC_008752  Aave_2064  response regulator receiver modulated metal dependent phosphohydrolase  44.68 
 
 
395 aa  137  7e-32  Acidovorax citrulli AAC00-1  Bacteria  normal  0.18463  normal  0.544249 
 
 
-
 
NC_014248  Aazo_4229  response regulator receiver sensor signal transduction histidine kinase  45.14 
 
 
383 aa  138  7e-32  'Nostoc azollae' 0708  Bacteria  normal  0.599633  n/a   
 
 
-
 
NC_010551  BamMC406_1236  response regulator receiver sensor signal transduction histidine kinase  44.24 
 
 
386 aa  137  1e-31  Burkholderia ambifaria MC40-6  Bacteria  normal  0.493129  normal 
 
 
-
 
NC_011146  Gbem_1228  response regulator receiver modulated diguanylate cyclase  47.06 
 
 
349 aa  136  2e-31  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_1018  response regulator receiver sensor signal transduction histidine kinase  49.62 
 
 
441 aa  137  2e-31  Geobacter bemidjiensis Bem  Bacteria  hitchhiker  0.00729938  n/a   
 
 
-
 
NC_012918  GM21_3242  response regulator receiver sensor signal transduction histidine kinase  48.12 
 
 
441 aa  135  4e-31  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_007947  Mfla_1761  two component LuxR family transcriptional regulator  50.75 
 
 
311 aa  135  4e-31  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_007517  Gmet_2999  response regulator receiver (CheY-like) modulated metal dependent phosphohydrolase  46.76 
 
 
361 aa  135  5e-31  Geobacter metallireducens GS-15  Bacteria  normal  normal  0.669597 
 
 
-
 
NC_012791  Vapar_4238  two component transcriptional regulator, LuxR family  50 
 
 
356 aa  134  9.999999999999999e-31  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_2150  response regulator receiver Signal transduction histidine kinase  55.47 
 
 
443 aa  134  9.999999999999999e-31  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.394463 
 
 
-
 
NC_008782  Ajs_1044  response regulator receiver modulated metal dependent phosphohydrolase  43.09 
 
 
377 aa  132  3e-30  Acidovorax sp. JS42  Bacteria  normal  normal  0.0516082 
 
 
-
 
NC_009901  Spea_0629  response regulator receiver modulated metal dependent phosphohydrolase  53.49 
 
 
339 aa  132  3.9999999999999996e-30  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_011992  Dtpsy_0962  response regulator receiver modulated metal dependent phosphohydrolase  43.72 
 
 
377 aa  132  3.9999999999999996e-30  Acidovorax ebreus TPSY  Bacteria  normal  0.115091  n/a   
 
 
-
 
NC_008781  Pnap_0979  response regulator receiver protein  49.29 
 
 
336 aa  131  6e-30  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_009092  Shew_3199  response regulator receiver modulated metal dependent phosphohydrolase  53.49 
 
 
339 aa  130  9e-30  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_4080  DNA-binding response regulator, LuxR family  52.8 
 
 
222 aa  130  1.0000000000000001e-29  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.542388  n/a   
 
 
-
 
NC_011726  PCC8801_0820  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  47.06 
 
 
593 aa  130  1.0000000000000001e-29  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_010524  Lcho_3544  response regulator receiver modulated diguanylate cyclase  53.78 
 
 
322 aa  130  1.0000000000000001e-29  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.0106122 
 
 
-
 
NC_010814  Glov_1118  response regulator receiver sensor signal transduction histidine kinase  51.49 
 
 
452 aa  130  1.0000000000000001e-29  Geobacter lovleyi SZ  Bacteria  hitchhiker  0.000972917  n/a   
 
 
-
 
NC_013161  Cyan8802_0849  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  47.06 
 
 
593 aa  130  1.0000000000000001e-29  Cyanothece sp. PCC 8802  Bacteria  normal  0.386146  normal 
 
 
-
 
NC_009831  Ssed_2864  two-component response regulator  42.78 
 
 
383 aa  129  3e-29  Shewanella sediminis HAW-EB3  Bacteria  normal  0.384945  hitchhiker  0.000000030251 
 
 
-
 
NC_008752  Aave_3524  two component LuxR family transcriptional regulator  48.61 
 
 
353 aa  129  4.0000000000000003e-29  Acidovorax citrulli AAC00-1  Bacteria  normal  0.406085  normal  0.428998 
 
 
-
 
NC_013422  Hneap_1587  two component transcriptional regulator, LuxR family  50.82 
 
 
292 aa  129  4.0000000000000003e-29  Halothiobacillus neapolitanus c2  Bacteria  normal  0.522901  n/a   
 
 
-
 
NC_013173  Dbac_2855  response regulator receiver sensor signal transduction histidine kinase  52.31 
 
 
348 aa  128  5.0000000000000004e-29  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_3523  response regulator receiver modulated metal dependent phosphohydrolase  50.78 
 
 
363 aa  128  5.0000000000000004e-29  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_013161  Cyan8802_3359  response regulator receiver sensor signal transduction histidine kinase  45.93 
 
 
395 aa  128  5.0000000000000004e-29  Cyanothece sp. PCC 8802  Bacteria  normal  0.361398  normal 
 
 
-
 
NC_008009  Acid345_4060  response regulator receiver modulated metal dependent phosphohydrolase  50 
 
 
365 aa  128  5.0000000000000004e-29  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal  0.0748941 
 
 
-
 
NC_011726  PCC8801_2743  response regulator receiver sensor signal transduction histidine kinase  45.93 
 
 
395 aa  128  5.0000000000000004e-29  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_007348  Reut_B4068  response regulator receiver  49.29 
 
 
377 aa  128  7.000000000000001e-29  Ralstonia eutropha JMP134  Bacteria  normal  0.706307  n/a   
 
 
-
 
NC_010581  Bind_0974  two component LuxR family transcriptional regulator  50 
 
 
309 aa  128  7.000000000000001e-29  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.883175  normal  0.426964 
 
 
-
 
NC_010725  Mpop_3574  two component transcriptional regulator, LuxR family  52.54 
 
 
301 aa  127  7.000000000000001e-29  Methylobacterium populi BJ001  Bacteria  normal  0.0249095  normal 
 
 
-
 
NC_007912  Sde_2977  response regulator receiver domain-containing protein  47.59 
 
 
303 aa  127  8.000000000000001e-29  Saccharophagus degradans 2-40  Bacteria  normal  normal  0.13601 
 
 
-
 
NC_010505  Mrad2831_5514  two component LuxR family transcriptional regulator  48.84 
 
 
305 aa  127  9.000000000000001e-29  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.211273 
 
 
-
 
NC_008700  Sama_2951  response regulator receiver protein  51.16 
 
 
340 aa  127  9.000000000000001e-29  Shewanella amazonensis SB2B  Bacteria  normal  normal  0.129077 
 
 
-
 
NC_009620  Smed_4179  response regulator receiver protein  44.68 
 
 
309 aa  127  1.0000000000000001e-28  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.15819 
 
 
-
 
NC_008340  Mlg_2429  response regulator receiver modulated metal dependent phosphohydrolase  45.89 
 
 
480 aa  127  1.0000000000000001e-28  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal  0.129673 
 
 
-
 
NC_009665  Shew185_0836  response regulator receiver modulated metal dependent phosphohydrolase  51.94 
 
 
338 aa  127  2.0000000000000002e-28  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009052  Sbal_3504  response regulator receiver modulated metal dependent phosphohydrolase  51.94 
 
 
338 aa  127  2.0000000000000002e-28  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_011989  Avi_3499  transcriptional regulator LuxR family  47.45 
 
 
312 aa  126  2.0000000000000002e-28  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_011729  PCC7424_2188  response regulator receiver sensor signal transduction histidine kinase  43.51 
 
 
384 aa  126  2.0000000000000002e-28  Cyanothece sp. PCC 7424  Bacteria  n/a    hitchhiker  0.00677544 
 
 
-
 
NC_011663  Sbal223_0859  response regulator receiver modulated metal dependent phosphohydrolase  51.94 
 
 
338 aa  127  2.0000000000000002e-28  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_009997  Sbal195_0871  response regulator receiver modulated metal dependent phosphohydrolase  51.94 
 
 
338 aa  126  2.0000000000000002e-28  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_007298  Daro_3458  response regulator receiver  51.11 
 
 
365 aa  125  3e-28  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_007298  Daro_3553  response regulator receiver  45.76 
 
 
384 aa  126  3e-28  Dechloromonas aromatica RCB  Bacteria  normal  0.739627  normal 
 
 
-
 
NC_008576  Mmc1_3408  response regulator receiver modulated metal dependent phosphohydrolase  52.71 
 
 
346 aa  125  3e-28  Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_013522  Taci_1373  response regulator receiver modulated metal dependent phosphohydrolase  45.26 
 
 
365 aa  124  7e-28  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  n/a   
 
 
-
 
NC_011369  Rleg2_3066  two component transcriptional regulator, LuxR family  46.72 
 
 
305 aa  124  8.000000000000001e-28  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_008321  Shewmr4_0481  response regulator receiver modulated metal dependent phosphohydrolase  52.34 
 
 
348 aa  124  8.000000000000001e-28  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_3549  response regulator receiver modulated metal dependent phosphohydrolase  52.34 
 
 
348 aa  124  8.000000000000001e-28  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_3397  two component LuxR family transcriptional regulator  50 
 
 
328 aa  124  1e-27  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_3866  response regulator receiver  51.69 
 
 
309 aa  124  1e-27  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.370865  normal 
 
 
-
 
NC_012918  GM21_0975  response regulator receiver sensor signal transduction histidine kinase  48.41 
 
 
383 aa  124  1e-27  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_008576  Mmc1_2528  response regulator receiver protein  50 
 
 
378 aa  124  1e-27  Magnetococcus sp. MC-1  Bacteria  normal  0.249668  normal  0.0734484 
 
 
-
 
NC_011146  Gbem_3274  response regulator receiver sensor signal transduction histidine kinase  48.41 
 
 
383 aa  124  1e-27  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_004347  SO_0860  response regulator  51.94 
 
 
339 aa  123  2e-27  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009438  Sputcn32_3141  response regulator receiver modulated metal dependent phosphohydrolase  51.94 
 
 
338 aa  123  2e-27  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_013161  Cyan8802_1380  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  46.21 
 
 
715 aa  123  2e-27  Cyanothece sp. PCC 8802  Bacteria  normal  0.923401  normal 
 
 
-
 
NC_009654  Mmwyl1_0962  response regulator receiver protein  44.1 
 
 
304 aa  123  2e-27  Marinomonas sp. MWYL1  Bacteria  normal  0.512477  normal 
 
 
-
 
NC_008825  Mpe_A3585  two component LuxR family transcriptional regulator  52.03 
 
 
306 aa  123  2e-27  Methylibium petroleiphilum PM1  Bacteria  normal  0.295986  normal 
 
 
-
 
NC_008786  Veis_1731  response regulator receiver protein  46.45 
 
 
361 aa  123  2e-27  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.319975 
 
 
-
 
NC_007948  Bpro_1354  two component LuxR family transcriptional regulator  46.43 
 
 
349 aa  123  2e-27  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_011726  PCC8801_1350  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  46.21 
 
 
715 aa  123  2e-27  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_008321  Shewmr4_0716  response regulator receiver modulated metal dependent phosphohydrolase  51.94 
 
 
338 aa  123  2e-27  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_3306  response regulator receiver modulated metal dependent phosphohydrolase  51.94 
 
 
338 aa  123  2e-27  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_011884  Cyan7425_2947  multi-sensor signal transduction histidine kinase  48.8 
 
 
503 aa  123  2e-27  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_008577  Shewana3_3418  response regulator receiver modulated metal dependent phosphohydrolase  51.94 
 
 
338 aa  123  2e-27  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_003910  CPS_4164  response regulator/phosphatase  50 
 
 
352 aa  122  3e-27  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_011757  Mchl_3692  two component transcriptional regulator, LuxR family  50.85 
 
 
300 aa  122  3e-27  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.170876  normal 
 
 
-
 
NC_008740  Maqu_3676  response regulator receiver modulated metal dependent phosphohydrolase  47.01 
 
 
328 aa  122  3e-27  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_010172  Mext_3383  response regulator receiver  50.85 
 
 
300 aa  122  3e-27  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_011138  MADE_01756  Response regulator CheB (receptor modification enzyme, protein-glutamate methylesterase)  52.94 
 
 
337 aa  122  4e-27  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.844049  n/a   
 
 
-
 
NC_008345  Sfri_2505  response regulator receiver modulated metal dependent phosphohydrolase  52.94 
 
 
331 aa  122  4e-27  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_011729  PCC7424_0984  response regulator receiver modulated diguanylate cyclase  43.79 
 
 
353 aa  122  4e-27  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.194443 
 
 
-
 
NC_008577  Shewana3_0479  response regulator receiver modulated metal dependent phosphohydrolase  52.76 
 
 
350 aa  122  4e-27  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_013440  Hoch_2262  response regulator receiver sensor signal transduction histidine kinase  41.13 
 
 
406 aa  122  5e-27  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.146487 
 
 
-
 
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