| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2864 |
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| Symbol | |
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| ID | 5613342 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3464986 |
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| End bp | 3466137 |
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| Gene Length | 1152 bp |
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| Protein Length | 383 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 640933783 |
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| Product | two-component response regulator |
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| Protein accession | YP_001474599 |
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| Protein GI | 157375999 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3437] Response regulator containing a CheY-like receiver domain and an HD-GYP domain |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.384945 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.000000030251 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGATTTACT CAAAAATGCC GAGGAATAAT GTGATGAATG CAAAACCAAC GCTTCTGGTT
GTTGACGATA CCCCTGCCAA CATTTCTCTG CTGCGTGAAA TTTTGAAAGA TCAATATAAG
GTAAAAATTG CAACTAATGG AGTTAAAGCT TTGGAAGTGG CTGTAAGTAA GCCAGCTCCC
GAGTTAATTT TATTAGACAT TATGATGCCG GAAATGGACG GTTATCAGGT GTGTGAACGT
CTTAAGGGAG ATGAGGCTAC TCGGGACATT CCTATTATTT TTTTAACGGC TAAGGCCGAA
GTGATTGATG AAACAAAAGG TTTAGCCATG GGAGCTGTGG ACTATATCAC TAAACCTATC
AGTCCTCCGA TTGTACTTGA ACGAGTAAAG ACCCAATTAA CTCTGAAAGA AGCCAGGGAT
TTTTTGAAAA ATCAAAATGA ACTCCTGGAG CAGAAAGTGC AGGAACGAAC CCGAATGATG
GAGCAGTTGC AAGATGTAGC TATGGTCGCA ATGGGGTCTT TGGCTGAGGC CAGGGATCCC
GAGACCGGTA ATCATATTCG TCGCACCCAA CGTTATGTAC AACGATTGGC AATCCAGCTT
AAAGAGCACC CTCGTTTTAG CGAGTTTCTT AAACCACAAA ATATAACATC TCTTTACAAG
TCGGCACCAC TTCATGATAT TGGAAAGGTG GGAGTTGCAG ATCATATTCT TCTCAAGCCT
GGAAAGTTAA CTGAGGAGGA ATTTAACAAG ATGAAGCTTC ATACTGTTTA CGGTCGAGAC
GCGATTGCTG CTGCAGAAAC TGCATTGGAT GAAACAGATG ACAATTTTCT CGTGTTTGCG
AAGGATATTG CATACAGTCA CCAAGAAAAG TGGGATGGTT CAGGATACCC GGAAGGATTA
AAAGGAGATG AAATTCCTAT CTCTGCCCGA TTAATGGCAG TTGCCGATGT CTATGATGCC
CTTATAAGTC GGCGAGTGTA TAAGCCGCCT TTTCCTCACC AAAAGGCTGT TGCGATCATT
CAAGAGGGAA GGGGGAGTCA TTTCGACCCT GATATGGTTG ATGCTTTTCT GGAGGTGGAA
GATGACTTTT ACTCTATTTC TCAGGAGTTT GCCGATTCCG AAGAGGATTT AAAAGTGAAA
GCTGGCTTTT AA
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| Protein sequence | MIYSKMPRNN VMNAKPTLLV VDDTPANISL LREILKDQYK VKIATNGVKA LEVAVSKPAP
ELILLDIMMP EMDGYQVCER LKGDEATRDI PIIFLTAKAE VIDETKGLAM GAVDYITKPI
SPPIVLERVK TQLTLKEARD FLKNQNELLE QKVQERTRMM EQLQDVAMVA MGSLAEARDP
ETGNHIRRTQ RYVQRLAIQL KEHPRFSEFL KPQNITSLYK SAPLHDIGKV GVADHILLKP
GKLTEEEFNK MKLHTVYGRD AIAAAETALD ETDDNFLVFA KDIAYSHQEK WDGSGYPEGL
KGDEIPISAR LMAVADVYDA LISRRVYKPP FPHQKAVAII QEGRGSHFDP DMVDAFLEVE
DDFYSISQEF ADSEEDLKVK AGF
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