Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_2864 |
Symbol | |
ID | 5613342 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 3464986 |
End bp | 3466137 |
Gene Length | 1152 bp |
Protein Length | 383 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 640933783 |
Product | two-component response regulator |
Protein accession | YP_001474599 |
Protein GI | 157375999 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG3437] Response regulator containing a CheY-like receiver domain and an HD-GYP domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.384945 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 2 |
Fosmid unclonability p-value | 0.000000030251 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGATTTACT CAAAAATGCC GAGGAATAAT GTGATGAATG CAAAACCAAC GCTTCTGGTT GTTGACGATA CCCCTGCCAA CATTTCTCTG CTGCGTGAAA TTTTGAAAGA TCAATATAAG GTAAAAATTG CAACTAATGG AGTTAAAGCT TTGGAAGTGG CTGTAAGTAA GCCAGCTCCC GAGTTAATTT TATTAGACAT TATGATGCCG GAAATGGACG GTTATCAGGT GTGTGAACGT CTTAAGGGAG ATGAGGCTAC TCGGGACATT CCTATTATTT TTTTAACGGC TAAGGCCGAA GTGATTGATG AAACAAAAGG TTTAGCCATG GGAGCTGTGG ACTATATCAC TAAACCTATC AGTCCTCCGA TTGTACTTGA ACGAGTAAAG ACCCAATTAA CTCTGAAAGA AGCCAGGGAT TTTTTGAAAA ATCAAAATGA ACTCCTGGAG CAGAAAGTGC AGGAACGAAC CCGAATGATG GAGCAGTTGC AAGATGTAGC TATGGTCGCA ATGGGGTCTT TGGCTGAGGC CAGGGATCCC GAGACCGGTA ATCATATTCG TCGCACCCAA CGTTATGTAC AACGATTGGC AATCCAGCTT AAAGAGCACC CTCGTTTTAG CGAGTTTCTT AAACCACAAA ATATAACATC TCTTTACAAG TCGGCACCAC TTCATGATAT TGGAAAGGTG GGAGTTGCAG ATCATATTCT TCTCAAGCCT GGAAAGTTAA CTGAGGAGGA ATTTAACAAG ATGAAGCTTC ATACTGTTTA CGGTCGAGAC GCGATTGCTG CTGCAGAAAC TGCATTGGAT GAAACAGATG ACAATTTTCT CGTGTTTGCG AAGGATATTG CATACAGTCA CCAAGAAAAG TGGGATGGTT CAGGATACCC GGAAGGATTA AAAGGAGATG AAATTCCTAT CTCTGCCCGA TTAATGGCAG TTGCCGATGT CTATGATGCC CTTATAAGTC GGCGAGTGTA TAAGCCGCCT TTTCCTCACC AAAAGGCTGT TGCGATCATT CAAGAGGGAA GGGGGAGTCA TTTCGACCCT GATATGGTTG ATGCTTTTCT GGAGGTGGAA GATGACTTTT ACTCTATTTC TCAGGAGTTT GCCGATTCCG AAGAGGATTT AAAAGTGAAA GCTGGCTTTT AA
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Protein sequence | MIYSKMPRNN VMNAKPTLLV VDDTPANISL LREILKDQYK VKIATNGVKA LEVAVSKPAP ELILLDIMMP EMDGYQVCER LKGDEATRDI PIIFLTAKAE VIDETKGLAM GAVDYITKPI SPPIVLERVK TQLTLKEARD FLKNQNELLE QKVQERTRMM EQLQDVAMVA MGSLAEARDP ETGNHIRRTQ RYVQRLAIQL KEHPRFSEFL KPQNITSLYK SAPLHDIGKV GVADHILLKP GKLTEEEFNK MKLHTVYGRD AIAAAETALD ETDDNFLVFA KDIAYSHQEK WDGSGYPEGL KGDEIPISAR LMAVADVYDA LISRRVYKPP FPHQKAVAII QEGRGSHFDP DMVDAFLEVE DDFYSISQEF ADSEEDLKVK AGF
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