More than 300 homologs were found in PanDaTox collection
for query gene Avi_3499 on replicon NC_011989
Organism: Agrobacterium vitis S4



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011989  Avi_3499  transcriptional regulator LuxR family  100 
 
 
312 aa  625  1e-178  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_011369  Rleg2_3066  two component transcriptional regulator, LuxR family  74.76 
 
 
305 aa  464  9.999999999999999e-131  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_3321  two component transcriptional regulator, LuxR family  73.14 
 
 
305 aa  457  9.999999999999999e-129  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.536368 
 
 
-
 
NC_009620  Smed_4179  response regulator receiver protein  71.01 
 
 
309 aa  437  1e-121  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.15819 
 
 
-
 
NC_010511  M446_0591  two component LuxR family transcriptional regulator  55.88 
 
 
301 aa  321  9.999999999999999e-87  Methylobacterium sp. 4-46  Bacteria  normal  0.477799  hitchhiker  0.00469436 
 
 
-
 
NC_009485  BBta_0652  two component LuxR family transcriptional regulator  51.1 
 
 
305 aa  317  1e-85  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.0800453  normal  0.813173 
 
 
-
 
NC_010581  Bind_0974  two component LuxR family transcriptional regulator  53.5 
 
 
309 aa  315  8e-85  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.883175  normal  0.426964 
 
 
-
 
NC_007778  RPB_1250  two component LuxR family transcriptional regulator  51.15 
 
 
309 aa  304  1.0000000000000001e-81  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.886948  normal 
 
 
-
 
NC_007958  RPD_3866  response regulator receiver  51.29 
 
 
309 aa  303  2.0000000000000002e-81  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.370865  normal 
 
 
-
 
NC_011004  Rpal_1441  two component transcriptional regulator, LuxR family  52.98 
 
 
308 aa  303  3.0000000000000004e-81  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_5514  two component LuxR family transcriptional regulator  55.85 
 
 
305 aa  289  3e-77  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.211273 
 
 
-
 
NC_010725  Mpop_3574  two component transcriptional regulator, LuxR family  56.03 
 
 
301 aa  289  5.0000000000000004e-77  Methylobacterium populi BJ001  Bacteria  normal  0.0249095  normal 
 
 
-
 
NC_011666  Msil_2002  two component transcriptional regulator, LuxR family  50.64 
 
 
306 aa  288  6e-77  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_008740  Maqu_3869  response regulator receiver protein  48.39 
 
 
301 aa  282  6.000000000000001e-75  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_010172  Mext_3383  response regulator receiver  54.4 
 
 
300 aa  279  4e-74  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_3692  two component transcriptional regulator, LuxR family  54.4 
 
 
300 aa  278  7e-74  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.170876  normal 
 
 
-
 
NC_007912  Sde_2977  response regulator receiver domain-containing protein  45.72 
 
 
303 aa  273  2.0000000000000002e-72  Saccharophagus degradans 2-40  Bacteria  normal  normal  0.13601 
 
 
-
 
NC_009654  Mmwyl1_0962  response regulator receiver protein  47.6 
 
 
304 aa  268  1e-70  Marinomonas sp. MWYL1  Bacteria  normal  0.512477  normal 
 
 
-
 
NC_008825  Mpe_A0671  two component LuxR family transcriptional regulator  45.54 
 
 
333 aa  252  6e-66  Methylibium petroleiphilum PM1  Bacteria  normal  0.0205263  normal 
 
 
-
 
NC_011138  MADE_00878  two-component response regulator  42.9 
 
 
298 aa  247  2e-64  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_007794  Saro_1665  two component LuxR family transcriptional regulator  45.58 
 
 
307 aa  247  2e-64  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_1083  two component LuxR family transcriptional regulator  46.84 
 
 
316 aa  240  2.9999999999999997e-62  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_008825  Mpe_A3585  two component LuxR family transcriptional regulator  45.57 
 
 
306 aa  238  6.999999999999999e-62  Methylibium petroleiphilum PM1  Bacteria  normal  0.295986  normal 
 
 
-
 
NC_007948  Bpro_0562  two component LuxR family transcriptional regulator  43.96 
 
 
297 aa  233  3e-60  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_013422  Hneap_1587  two component transcriptional regulator, LuxR family  42.91 
 
 
292 aa  232  7.000000000000001e-60  Halothiobacillus neapolitanus c2  Bacteria  normal  0.522901  n/a   
 
 
-
 
NC_008709  Ping_2984  two component transcriptional regulator, LuxR family protein  40.73 
 
 
295 aa  232  7.000000000000001e-60  Psychromonas ingrahamii 37  Bacteria  normal  0.43543  normal  0.546259 
 
 
-
 
NC_007908  Rfer_3397  two component LuxR family transcriptional regulator  43.37 
 
 
328 aa  231  9e-60  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_1445  two component LuxR family transcriptional regulator  44.92 
 
 
308 aa  231  1e-59  Dechloromonas aromatica RCB  Bacteria  normal  0.446624  normal 
 
 
-
 
NC_008781  Pnap_0979  response regulator receiver protein  41.74 
 
 
336 aa  230  2e-59  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_012791  Vapar_3147  two component transcriptional regulator, LuxR family  44.9 
 
 
302 aa  227  2e-58  Variovorax paradoxus S110  Bacteria  normal  0.235206  n/a   
 
 
-
 
NC_007947  Mfla_1761  two component LuxR family transcriptional regulator  41.28 
 
 
311 aa  226  5.0000000000000005e-58  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_0218  two component LuxR family transcriptional regulator  41.07 
 
 
339 aa  224  2e-57  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_008061  Bcen_3730  two component LuxR family transcriptional regulator  42.62 
 
 
312 aa  222  7e-57  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_010515  Bcenmc03_5666  two component LuxR family transcriptional regulator  42.57 
 
 
312 aa  222  7e-57  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.917296 
 
 
-
 
NC_008543  Bcen2424_4638  two component LuxR family transcriptional regulator  42.62 
 
 
312 aa  222  7e-57  Burkholderia cenocepacia HI2424  Bacteria  normal  normal 
 
 
-
 
NC_007948  Bpro_1354  two component LuxR family transcriptional regulator  42.44 
 
 
349 aa  219  3.9999999999999997e-56  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_012791  Vapar_4238  two component transcriptional regulator, LuxR family  41.09 
 
 
356 aa  219  3.9999999999999997e-56  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_008752  Aave_3524  two component LuxR family transcriptional regulator  44.03 
 
 
353 aa  218  7.999999999999999e-56  Acidovorax citrulli AAC00-1  Bacteria  normal  0.406085  normal  0.428998 
 
 
-
 
NC_008786  Veis_1731  response regulator receiver protein  40.24 
 
 
361 aa  218  7.999999999999999e-56  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.319975 
 
 
-
 
NC_007952  Bxe_B1713  two component LuxR family transcriptional regulator  39.33 
 
 
361 aa  214  9.999999999999999e-55  Burkholderia xenovorans LB400  Bacteria  normal  0.310925  normal 
 
 
-
 
NC_010571  Oter_1720  two component LuxR family transcriptional regulator  36.28 
 
 
301 aa  167  2.9999999999999998e-40  Opitutus terrae PB90-1  Bacteria  normal  0.162572  normal  0.616267 
 
 
-
 
NC_004578  PSPTO_4080  DNA-binding response regulator, LuxR family  52.21 
 
 
222 aa  157  2e-37  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.542388  n/a   
 
 
-
 
NC_011884  Cyan7425_3210  response regulator receiver modulated diguanylate cyclase  56.03 
 
 
337 aa  139  7.999999999999999e-32  Cyanothece sp. PCC 7425  Bacteria  normal  0.32327  normal  0.712325 
 
 
-
 
NC_007413  Ava_2149  response regulator receiver Signal transduction histidine kinase  51.15 
 
 
407 aa  137  2e-31  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.142048 
 
 
-
 
NC_007413  Ava_2562  response regulator receiver Signal transduction histidine kinase  50.79 
 
 
437 aa  134  9.999999999999999e-31  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_013440  Hoch_2175  response regulator receiver sensor signal transduction histidine kinase  50.83 
 
 
395 aa  131  1.0000000000000001e-29  Haliangium ochraceum DSM 14365  Bacteria  normal  0.924768  normal  0.400775 
 
 
-
 
NC_013730  Slin_2507  two component, sigma54 specific, transcriptional regulator, Fis family  50 
 
 
488 aa  131  2.0000000000000002e-29  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.182398 
 
 
-
 
NC_014248  Aazo_4465  response regulator receiver sensor signal transduction histidine kinase  47.62 
 
 
437 aa  130  2.0000000000000002e-29  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_011884  Cyan7425_0790  multi-sensor signal transduction histidine kinase  47.62 
 
 
566 aa  130  4.0000000000000003e-29  Cyanothece sp. PCC 7425  Bacteria  normal  0.391268  normal 
 
 
-
 
NC_013440  Hoch_6548  response regulator receiver sensor signal transduction histidine kinase  47.01 
 
 
397 aa  127  2.0000000000000002e-28  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.543575 
 
 
-
 
NC_010571  Oter_0809  response regulator receiver sensor signal transduction histidine kinase  50 
 
 
367 aa  127  3e-28  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
NC_009767  Rcas_3134  response regulator receiver protein  47.45 
 
 
200 aa  126  4.0000000000000003e-28  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_4136  response regulator receiver Signal transduction histidine kinase  50 
 
 
440 aa  125  1e-27  Anabaena variabilis ATCC 29413  Bacteria  decreased coverage  0.00000660181  hitchhiker  0.00876613 
 
 
-
 
NC_010551  BamMC406_1236  response regulator receiver sensor signal transduction histidine kinase  44.44 
 
 
386 aa  124  2e-27  Burkholderia ambifaria MC40-6  Bacteria  normal  0.493129  normal 
 
 
-
 
NC_010623  Bphy_4530  response regulator receiver sensor signal transduction histidine kinase  44.44 
 
 
386 aa  124  2e-27  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_010625  Bphy_6559  multi-sensor signal transduction histidine kinase  47.1 
 
 
541 aa  123  4e-27  Burkholderia phymatum STM815  Bacteria  normal  normal  0.59439 
 
 
-
 
NC_011729  PCC7424_0984  response regulator receiver modulated diguanylate cyclase  44.9 
 
 
353 aa  122  7e-27  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.194443 
 
 
-
 
NC_010814  Glov_1118  response regulator receiver sensor signal transduction histidine kinase  47.93 
 
 
452 aa  120  1.9999999999999998e-26  Geobacter lovleyi SZ  Bacteria  hitchhiker  0.000972917  n/a   
 
 
-
 
NC_009012  Cthe_1826  response regulator receiver sensor signal transduction histidine kinase  44.03 
 
 
363 aa  120  1.9999999999999998e-26  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_010627  Bphy_7700  multi-sensor signal transduction histidine kinase  50 
 
 
541 aa  121  1.9999999999999998e-26  Burkholderia phymatum STM815  Bacteria  normal  0.163324  normal  0.507763 
 
 
-
 
NC_013216  Dtox_1577  response regulator receiver modulated diguanylate cyclase  43.65 
 
 
314 aa  121  1.9999999999999998e-26  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_010676  Bphyt_6236  multi-sensor signal transduction histidine kinase  47.5 
 
 
553 aa  119  6e-26  Burkholderia phytofirmans PsJN  Bacteria  normal  normal  0.914679 
 
 
-
 
NC_007908  Rfer_2262  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  38.46 
 
 
853 aa  117  1.9999999999999998e-25  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_0007  response regulator receiver modulated metal dependent phosphohydrolase  48 
 
 
379 aa  117  3e-25  Dechloromonas aromatica RCB  Bacteria  normal  0.829613  normal  0.0284762 
 
 
-
 
NC_010681  Bphyt_2397  two component transcriptional regulator, AraC family  46.4 
 
 
269 aa  117  3e-25  Burkholderia phytofirmans PsJN  Bacteria  normal  0.92999  normal  0.351016 
 
 
-
 
NC_014248  Aazo_4229  response regulator receiver sensor signal transduction histidine kinase  46.15 
 
 
383 aa  117  3e-25  'Nostoc azollae' 0708  Bacteria  normal  0.599633  n/a   
 
 
-
 
NC_009523  RoseRS_2347  response regulator receiver protein  47.11 
 
 
202 aa  116  3.9999999999999997e-25  Roseiflexus sp. RS-1  Bacteria  normal  0.56815  normal 
 
 
-
 
NC_011831  Cagg_1006  response regulator receiver modulated diguanylate cyclase  46.15 
 
 
312 aa  117  3.9999999999999997e-25  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_010814  Glov_3523  response regulator receiver modulated metal dependent phosphohydrolase  46.28 
 
 
363 aa  115  6.9999999999999995e-25  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_2150  response regulator receiver Signal transduction histidine kinase  45.24 
 
 
443 aa  115  1.0000000000000001e-24  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.394463 
 
 
-
 
NC_011729  PCC7424_0178  response regulator receiver modulated diguanylate cyclase  39.42 
 
 
322 aa  114  2.0000000000000002e-24  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.895619 
 
 
-
 
NC_008312  Tery_4155  response regulator receiver sensor signal transduction histidine kinase  48.31 
 
 
440 aa  114  2.0000000000000002e-24  Trichodesmium erythraeum IMS101  Bacteria  normal  0.50715  normal 
 
 
-
 
NC_012560  Avin_25160  response regulator  41.84 
 
 
356 aa  113  3e-24  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_008709  Ping_0978  response regulator receiver modulated diguanylate cyclase  39.85 
 
 
322 aa  113  5e-24  Psychromonas ingrahamii 37  Bacteria  normal  0.97362  decreased coverage  0.00116316 
 
 
-
 
NC_011146  Gbem_1228  response regulator receiver modulated diguanylate cyclase  44.88 
 
 
349 aa  112  6e-24  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_014248  Aazo_1477  response regulator receiver modulated diguanylate cyclase  41.67 
 
 
317 aa  112  7.000000000000001e-24  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_011138  MADE_03429  two-component system response regulator (hybrid family) protein  37.3 
 
 
358 aa  112  9e-24  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_2955  response regulator receiver modulated diguanylate cyclase  45.08 
 
 
308 aa  112  9e-24  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_011729  PCC7424_5086  response regulator receiver modulated diguanylate cyclase  39.44 
 
 
465 aa  111  1.0000000000000001e-23  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_008321  Shewmr4_0716  response regulator receiver modulated metal dependent phosphohydrolase  45.3 
 
 
338 aa  112  1.0000000000000001e-23  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_3306  response regulator receiver modulated metal dependent phosphohydrolase  45.3 
 
 
338 aa  112  1.0000000000000001e-23  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_008554  Sfum_2303  response regulator receiver protein  42.97 
 
 
227 aa  111  1.0000000000000001e-23  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_008577  Shewana3_3418  response regulator receiver modulated metal dependent phosphohydrolase  45.3 
 
 
338 aa  112  1.0000000000000001e-23  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_012918  GM21_0975  response regulator receiver sensor signal transduction histidine kinase  42.28 
 
 
383 aa  110  2.0000000000000002e-23  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_007517  Gmet_2999  response regulator receiver (CheY-like) modulated metal dependent phosphohydrolase  43.09 
 
 
361 aa  111  2.0000000000000002e-23  Geobacter metallireducens GS-15  Bacteria  normal  normal  0.669597 
 
 
-
 
NC_010524  Lcho_3702  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  45.97 
 
 
863 aa  110  2.0000000000000002e-23  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.170309 
 
 
-
 
NC_012880  Dd703_3123  response regulator receiver modulated diguanylate cyclase  47.41 
 
 
312 aa  110  2.0000000000000002e-23  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_010571  Oter_0959  response regulator receiver sensor signal transduction histidine kinase  47.01 
 
 
372 aa  111  2.0000000000000002e-23  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
NC_008609  Ppro_2062  response regulator receiver protein  37.91 
 
 
217 aa  111  2.0000000000000002e-23  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_010571  Oter_3794  response regulator receiver sensor signal transduction histidine kinase  41.38 
 
 
376 aa  110  3e-23  Opitutus terrae PB90-1  Bacteria  normal  0.0277983  normal  0.543799 
 
 
-
 
NC_011146  Gbem_3274  response regulator receiver sensor signal transduction histidine kinase  42.28 
 
 
383 aa  110  3e-23  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_009438  Sputcn32_3141  response regulator receiver modulated metal dependent phosphohydrolase  44.44 
 
 
338 aa  110  4.0000000000000004e-23  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_011726  PCC8801_1139  response regulator receiver modulated diguanylate cyclase  39.2 
 
 
308 aa  110  4.0000000000000004e-23  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_009901  Spea_0629  response regulator receiver modulated metal dependent phosphohydrolase  42.74 
 
 
339 aa  110  4.0000000000000004e-23  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_013161  Cyan8802_1169  response regulator receiver modulated diguanylate cyclase  39.2 
 
 
308 aa  110  4.0000000000000004e-23  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_011728  BbuZS7_0421  response regulatory protein  43.33 
 
 
305 aa  109  5e-23  Borrelia burgdorferi ZS7  Bacteria  normal  0.972098  n/a   
 
 
-
 
NC_007955  Mbur_0695  response regulator receiver  42.62 
 
 
170 aa  109  5e-23  Methanococcoides burtonii DSM 6242  Archaea  normal  0.412637  n/a   
 
 
-
 
NC_009457  VC0395_A0963  response regulator  45.45 
 
 
441 aa  109  5e-23  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_008345  Sfri_2505  response regulator receiver modulated metal dependent phosphohydrolase  43.28 
 
 
331 aa  109  5e-23  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_3544  response regulator receiver modulated diguanylate cyclase  46.55 
 
 
322 aa  109  6e-23  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.0106122 
 
 
-
 
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