More than 300 homologs were found in PanDaTox collection
for query gene Sde_2977 on replicon NC_007912
Organism: Saccharophagus degradans 2-40



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007912  Sde_2977  response regulator receiver domain-containing protein  100 
 
 
303 aa  624  1e-178  Saccharophagus degradans 2-40  Bacteria  normal  normal  0.13601 
 
 
-
 
NC_009654  Mmwyl1_0962  response regulator receiver protein  52.51 
 
 
304 aa  308  8e-83  Marinomonas sp. MWYL1  Bacteria  normal  0.512477  normal 
 
 
-
 
NC_008740  Maqu_3869  response regulator receiver protein  52.03 
 
 
301 aa  307  1.0000000000000001e-82  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_0652  two component LuxR family transcriptional regulator  48.36 
 
 
305 aa  296  4e-79  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.0800453  normal  0.813173 
 
 
-
 
NC_008709  Ping_2984  two component transcriptional regulator, LuxR family protein  49.49 
 
 
295 aa  286  4e-76  Psychromonas ingrahamii 37  Bacteria  normal  0.43543  normal  0.546259 
 
 
-
 
NC_010511  M446_0591  two component LuxR family transcriptional regulator  46.84 
 
 
301 aa  285  9e-76  Methylobacterium sp. 4-46  Bacteria  normal  0.477799  hitchhiker  0.00469436 
 
 
-
 
NC_011138  MADE_00878  two-component response regulator  48.34 
 
 
298 aa  284  1.0000000000000001e-75  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_009620  Smed_4179  response regulator receiver protein  46.84 
 
 
309 aa  283  2.0000000000000002e-75  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.15819 
 
 
-
 
NC_011004  Rpal_1441  two component transcriptional regulator, LuxR family  48.83 
 
 
308 aa  278  6e-74  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_3866  response regulator receiver  50 
 
 
309 aa  277  1e-73  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.370865  normal 
 
 
-
 
NC_011369  Rleg2_3066  two component transcriptional regulator, LuxR family  46.67 
 
 
305 aa  277  2e-73  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_010581  Bind_0974  two component LuxR family transcriptional regulator  45.67 
 
 
309 aa  276  4e-73  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.883175  normal  0.426964 
 
 
-
 
NC_012850  Rleg_3321  two component transcriptional regulator, LuxR family  46.13 
 
 
305 aa  275  8e-73  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.536368 
 
 
-
 
NC_007778  RPB_1250  two component LuxR family transcriptional regulator  49.31 
 
 
309 aa  274  1.0000000000000001e-72  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.886948  normal 
 
 
-
 
NC_010505  Mrad2831_5514  two component LuxR family transcriptional regulator  48.5 
 
 
305 aa  271  1e-71  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.211273 
 
 
-
 
NC_010725  Mpop_3574  two component transcriptional regulator, LuxR family  48.46 
 
 
301 aa  270  2e-71  Methylobacterium populi BJ001  Bacteria  normal  0.0249095  normal 
 
 
-
 
NC_011757  Mchl_3692  two component transcriptional regulator, LuxR family  48.83 
 
 
300 aa  270  2.9999999999999997e-71  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.170876  normal 
 
 
-
 
NC_010172  Mext_3383  response regulator receiver  48.83 
 
 
300 aa  270  2.9999999999999997e-71  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_011989  Avi_3499  transcriptional regulator LuxR family  46.23 
 
 
312 aa  267  2e-70  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_011666  Msil_2002  two component transcriptional regulator, LuxR family  46.31 
 
 
306 aa  256  3e-67  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_010002  Daci_0218  two component LuxR family transcriptional regulator  42.81 
 
 
339 aa  246  3e-64  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_013422  Hneap_1587  two component transcriptional regulator, LuxR family  43.1 
 
 
292 aa  243  3e-63  Halothiobacillus neapolitanus c2  Bacteria  normal  0.522901  n/a   
 
 
-
 
NC_008825  Mpe_A0671  two component LuxR family transcriptional regulator  42.58 
 
 
333 aa  240  2e-62  Methylibium petroleiphilum PM1  Bacteria  normal  0.0205263  normal 
 
 
-
 
NC_008825  Mpe_A3585  two component LuxR family transcriptional regulator  45.94 
 
 
306 aa  236  3e-61  Methylibium petroleiphilum PM1  Bacteria  normal  0.295986  normal 
 
 
-
 
NC_007947  Mfla_1761  two component LuxR family transcriptional regulator  44.9 
 
 
311 aa  236  4e-61  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_007948  Bpro_0562  two component LuxR family transcriptional regulator  42.2 
 
 
297 aa  228  7e-59  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_010515  Bcenmc03_5666  two component LuxR family transcriptional regulator  39.23 
 
 
312 aa  228  9e-59  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.917296 
 
 
-
 
NC_008061  Bcen_3730  two component LuxR family transcriptional regulator  39.23 
 
 
312 aa  228  1e-58  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008543  Bcen2424_4638  two component LuxR family transcriptional regulator  39.23 
 
 
312 aa  228  1e-58  Burkholderia cenocepacia HI2424  Bacteria  normal  normal 
 
 
-
 
NC_008781  Pnap_0979  response regulator receiver protein  41.07 
 
 
336 aa  224  2e-57  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_3397  two component LuxR family transcriptional regulator  42.9 
 
 
328 aa  221  9.999999999999999e-57  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_3147  two component transcriptional regulator, LuxR family  41.98 
 
 
302 aa  220  1.9999999999999999e-56  Variovorax paradoxus S110  Bacteria  normal  0.235206  n/a   
 
 
-
 
NC_007948  Bpro_1354  two component LuxR family transcriptional regulator  41.25 
 
 
349 aa  218  1e-55  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_010524  Lcho_1083  two component LuxR family transcriptional regulator  41.97 
 
 
316 aa  218  1e-55  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_007298  Daro_1445  two component LuxR family transcriptional regulator  43.19 
 
 
308 aa  217  2e-55  Dechloromonas aromatica RCB  Bacteria  normal  0.446624  normal 
 
 
-
 
NC_008786  Veis_1731  response regulator receiver protein  38.86 
 
 
361 aa  216  5e-55  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.319975 
 
 
-
 
NC_008752  Aave_3524  two component LuxR family transcriptional regulator  41.25 
 
 
353 aa  216  5e-55  Acidovorax citrulli AAC00-1  Bacteria  normal  0.406085  normal  0.428998 
 
 
-
 
NC_007952  Bxe_B1713  two component LuxR family transcriptional regulator  36.25 
 
 
361 aa  215  7e-55  Burkholderia xenovorans LB400  Bacteria  normal  0.310925  normal 
 
 
-
 
NC_007794  Saro_1665  two component LuxR family transcriptional regulator  36.75 
 
 
307 aa  212  5.999999999999999e-54  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_4238  two component transcriptional regulator, LuxR family  37.83 
 
 
356 aa  209  5e-53  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_010571  Oter_1720  two component LuxR family transcriptional regulator  36.93 
 
 
301 aa  170  2e-41  Opitutus terrae PB90-1  Bacteria  normal  0.162572  normal  0.616267 
 
 
-
 
NC_004578  PSPTO_4080  DNA-binding response regulator, LuxR family  51.45 
 
 
222 aa  155  9e-37  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.542388  n/a   
 
 
-
 
NC_007413  Ava_2149  response regulator receiver Signal transduction histidine kinase  44.51 
 
 
407 aa  143  4e-33  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.142048 
 
 
-
 
NC_013440  Hoch_2175  response regulator receiver sensor signal transduction histidine kinase  56.03 
 
 
395 aa  141  9.999999999999999e-33  Haliangium ochraceum DSM 14365  Bacteria  normal  0.924768  normal  0.400775 
 
 
-
 
NC_013440  Hoch_6548  response regulator receiver sensor signal transduction histidine kinase  48.41 
 
 
397 aa  140  3e-32  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.543575 
 
 
-
 
NC_011884  Cyan7425_0790  multi-sensor signal transduction histidine kinase  49.21 
 
 
566 aa  134  9.999999999999999e-31  Cyanothece sp. PCC 7425  Bacteria  normal  0.391268  normal 
 
 
-
 
NC_010625  Bphy_6559  multi-sensor signal transduction histidine kinase  52.59 
 
 
541 aa  134  3e-30  Burkholderia phymatum STM815  Bacteria  normal  normal  0.59439 
 
 
-
 
NC_011884  Cyan7425_3210  response regulator receiver modulated diguanylate cyclase  50.79 
 
 
337 aa  134  3e-30  Cyanothece sp. PCC 7425  Bacteria  normal  0.32327  normal  0.712325 
 
 
-
 
NC_007413  Ava_2562  response regulator receiver Signal transduction histidine kinase  52.59 
 
 
437 aa  131  1.0000000000000001e-29  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_2507  two component, sigma54 specific, transcriptional regulator, Fis family  47.79 
 
 
488 aa  131  1.0000000000000001e-29  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.182398 
 
 
-
 
NC_010627  Bphy_7700  multi-sensor signal transduction histidine kinase  52.59 
 
 
541 aa  130  3e-29  Burkholderia phymatum STM815  Bacteria  normal  0.163324  normal  0.507763 
 
 
-
 
NC_010571  Oter_0809  response regulator receiver sensor signal transduction histidine kinase  50.42 
 
 
367 aa  130  4.0000000000000003e-29  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
NC_010676  Bphyt_6236  multi-sensor signal transduction histidine kinase  50.86 
 
 
553 aa  129  9.000000000000001e-29  Burkholderia phytofirmans PsJN  Bacteria  normal  normal  0.914679 
 
 
-
 
NC_014248  Aazo_4465  response regulator receiver sensor signal transduction histidine kinase  50.86 
 
 
437 aa  127  2.0000000000000002e-28  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_3134  response regulator receiver protein  47.59 
 
 
200 aa  127  2.0000000000000002e-28  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_4136  response regulator receiver Signal transduction histidine kinase  50.86 
 
 
440 aa  125  7e-28  Anabaena variabilis ATCC 29413  Bacteria  decreased coverage  0.00000660181  hitchhiker  0.00876613 
 
 
-
 
NC_009012  Cthe_1826  response regulator receiver sensor signal transduction histidine kinase  43.75 
 
 
363 aa  125  7e-28  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_2150  response regulator receiver Signal transduction histidine kinase  48.36 
 
 
443 aa  125  1e-27  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.394463 
 
 
-
 
NC_010623  Bphy_4530  response regulator receiver sensor signal transduction histidine kinase  44.44 
 
 
386 aa  124  1e-27  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_010551  BamMC406_1236  response regulator receiver sensor signal transduction histidine kinase  43.65 
 
 
386 aa  122  5e-27  Burkholderia ambifaria MC40-6  Bacteria  normal  0.493129  normal 
 
 
-
 
NC_010814  Glov_1118  response regulator receiver sensor signal transduction histidine kinase  46.51 
 
 
452 aa  122  6e-27  Geobacter lovleyi SZ  Bacteria  hitchhiker  0.000972917  n/a   
 
 
-
 
NC_008312  Tery_4155  response regulator receiver sensor signal transduction histidine kinase  30.9 
 
 
440 aa  122  8e-27  Trichodesmium erythraeum IMS101  Bacteria  normal  0.50715  normal 
 
 
-
 
NC_013161  Cyan8802_2067  response regulator receiver modulated diguanylate cyclase  43.65 
 
 
317 aa  122  9.999999999999999e-27  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_011726  PCC8801_2041  response regulator receiver modulated diguanylate cyclase  43.65 
 
 
317 aa  122  9.999999999999999e-27  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_009654  Mmwyl1_2382  response regulator receiver modulated metal dependent phosphohydrolase  47.37 
 
 
359 aa  120  1.9999999999999998e-26  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_010557  BamMC406_5929  two component AraC family transcriptional regulator  34.41 
 
 
277 aa  120  3e-26  Burkholderia ambifaria MC40-6  Bacteria  normal  0.473719  normal 
 
 
-
 
NC_014248  Aazo_4229  response regulator receiver sensor signal transduction histidine kinase  44.53 
 
 
383 aa  120  3e-26  'Nostoc azollae' 0708  Bacteria  normal  0.599633  n/a   
 
 
-
 
NC_010557  BamMC406_6071  two component AraC family transcriptional regulator  46.21 
 
 
271 aa  120  3e-26  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_011146  Gbem_1018  response regulator receiver sensor signal transduction histidine kinase  43.08 
 
 
441 aa  120  3.9999999999999996e-26  Geobacter bemidjiensis Bem  Bacteria  hitchhiker  0.00729938  n/a   
 
 
-
 
NC_013216  Dtox_1577  response regulator receiver modulated diguanylate cyclase  47.41 
 
 
314 aa  119  7e-26  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_008392  Bamb_6368  two component AraC family transcriptional regulator  45.45 
 
 
271 aa  119  9e-26  Burkholderia ambifaria AMMD  Bacteria  normal  0.434467  normal 
 
 
-
 
NC_008752  Aave_2064  response regulator receiver modulated metal dependent phosphohydrolase  47.97 
 
 
395 aa  118  9.999999999999999e-26  Acidovorax citrulli AAC00-1  Bacteria  normal  0.18463  normal  0.544249 
 
 
-
 
NC_008392  Bamb_6198  two component AraC family transcriptional regulator  34.01 
 
 
277 aa  118  9.999999999999999e-26  Burkholderia ambifaria AMMD  Bacteria  normal  normal 
 
 
-
 
NC_008709  Ping_0978  response regulator receiver modulated diguanylate cyclase  44.16 
 
 
322 aa  118  9.999999999999999e-26  Psychromonas ingrahamii 37  Bacteria  normal  0.97362  decreased coverage  0.00116316 
 
 
-
 
NC_011726  PCC8801_1483  response regulator receiver sensor signal transduction histidine kinase  37.43 
 
 
374 aa  117  1.9999999999999998e-25  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013161  Cyan8802_1510  response regulator receiver sensor signal transduction histidine kinase  37.43 
 
 
374 aa  117  1.9999999999999998e-25  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_010814  Glov_3523  response regulator receiver modulated metal dependent phosphohydrolase  46.61 
 
 
363 aa  117  1.9999999999999998e-25  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_3242  response regulator receiver sensor signal transduction histidine kinase  42.4 
 
 
441 aa  117  1.9999999999999998e-25  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_011992  Dtpsy_0962  response regulator receiver modulated metal dependent phosphohydrolase  48.78 
 
 
377 aa  116  5e-25  Acidovorax ebreus TPSY  Bacteria  normal  0.115091  n/a   
 
 
-
 
NC_008782  Ajs_1044  response regulator receiver modulated metal dependent phosphohydrolase  49.19 
 
 
377 aa  116  5e-25  Acidovorax sp. JS42  Bacteria  normal  normal  0.0516082 
 
 
-
 
NC_010681  Bphyt_2397  two component transcriptional regulator, AraC family  40.94 
 
 
269 aa  115  6.9999999999999995e-25  Burkholderia phytofirmans PsJN  Bacteria  normal  0.92999  normal  0.351016 
 
 
-
 
NC_011726  PCC8801_2743  response regulator receiver sensor signal transduction histidine kinase  40 
 
 
395 aa  115  8.999999999999998e-25  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_009523  RoseRS_2347  response regulator receiver protein  46.83 
 
 
202 aa  115  8.999999999999998e-25  Roseiflexus sp. RS-1  Bacteria  normal  0.56815  normal 
 
 
-
 
NC_013161  Cyan8802_3359  response regulator receiver sensor signal transduction histidine kinase  40 
 
 
395 aa  115  8.999999999999998e-25  Cyanothece sp. PCC 8802  Bacteria  normal  0.361398  normal 
 
 
-
 
NC_007413  Ava_0124  response regulator receiver Signal transduction histidine kinase  49.11 
 
 
470 aa  114  1.0000000000000001e-24  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_007520  Tcr_2179  response regulator receiver (CheY-like) modulated metal dependent phosphohydrolase  45.38 
 
 
348 aa  114  1.0000000000000001e-24  Thiomicrospira crunogena XCL-2  Bacteria  normal  0.378064  n/a   
 
 
-
 
NC_007796  Mhun_1941  response regulator receiver domain-containing protein  42.86 
 
 
156 aa  115  1.0000000000000001e-24  Methanospirillum hungatei JF-1  Archaea  normal  normal 
 
 
-
 
NC_011729  PCC7424_2188  response regulator receiver sensor signal transduction histidine kinase  42.64 
 
 
384 aa  115  1.0000000000000001e-24  Cyanothece sp. PCC 7424  Bacteria  n/a    hitchhiker  0.00677544 
 
 
-
 
NC_009439  Pmen_0836  response regulator receiver protein  47.54 
 
 
395 aa  114  2.0000000000000002e-24  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_008554  Sfum_2303  response regulator receiver protein  47.41 
 
 
227 aa  114  2.0000000000000002e-24  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_008576  Mmc1_3072  response regulator receiver modulated metal dependent phosphohydrolase  47.01 
 
 
353 aa  114  2.0000000000000002e-24  Magnetococcus sp. MC-1  Bacteria  normal  hitchhiker  0.000480818 
 
 
-
 
NC_011726  PCC8801_1139  response regulator receiver modulated diguanylate cyclase  37.67 
 
 
308 aa  114  3e-24  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_011729  PCC7424_0178  response regulator receiver modulated diguanylate cyclase  41.41 
 
 
322 aa  114  3e-24  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.895619 
 
 
-
 
NC_013161  Cyan8802_1169  response regulator receiver modulated diguanylate cyclase  37.67 
 
 
308 aa  114  3e-24  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_010512  Bcenmc03_6350  two component AraC family transcriptional regulator  48.33 
 
 
271 aa  113  4.0000000000000004e-24  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.787195  normal  0.900493 
 
 
-
 
NC_007509  Bcep18194_C7377  two component AraC family transcriptional regulator  32.81 
 
 
278 aa  113  4.0000000000000004e-24  Burkholderia sp. 383  Bacteria  normal  0.0377301  normal  0.284562 
 
 
-
 
NC_013161  Cyan8802_0849  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  44.35 
 
 
593 aa  113  4.0000000000000004e-24  Cyanothece sp. PCC 8802  Bacteria  normal  0.386146  normal 
 
 
-
 
NC_011726  PCC8801_0820  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  44.35 
 
 
593 aa  113  4.0000000000000004e-24  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_007298  Daro_1573  response regulator receiver:ATP-binding region, ATPase-like:histidine kinase, dimerization and phosphoacceptor region  43.65 
 
 
373 aa  113  5e-24  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_008544  Bcen2424_6762  two component AraC family transcriptional regulator  48.33 
 
 
271 aa  113  5e-24  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.295507 
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>