More than 300 homologs were found in PanDaTox collection
for query gene Bcen2424_4638 on replicon NC_008543
Organism: Burkholderia cenocepacia HI2424



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008061  Bcen_3730  two component LuxR family transcriptional regulator  100 
 
 
312 aa  632  1e-180  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008543  Bcen2424_4638  two component LuxR family transcriptional regulator  100 
 
 
312 aa  632  1e-180  Burkholderia cenocepacia HI2424  Bacteria  normal  normal 
 
 
-
 
NC_010515  Bcenmc03_5666  two component LuxR family transcriptional regulator  98.4 
 
 
312 aa  622  1e-177  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.917296 
 
 
-
 
NC_007952  Bxe_B1713  two component LuxR family transcriptional regulator  55.52 
 
 
361 aa  340  1e-92  Burkholderia xenovorans LB400  Bacteria  normal  0.310925  normal 
 
 
-
 
NC_008825  Mpe_A0671  two component LuxR family transcriptional regulator  46.71 
 
 
333 aa  245  6e-64  Methylibium petroleiphilum PM1  Bacteria  normal  0.0205263  normal 
 
 
-
 
NC_007947  Mfla_1761  two component LuxR family transcriptional regulator  46 
 
 
311 aa  245  8e-64  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_010581  Bind_0974  two component LuxR family transcriptional regulator  42.49 
 
 
309 aa  238  1e-61  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.883175  normal  0.426964 
 
 
-
 
NC_010524  Lcho_1083  two component LuxR family transcriptional regulator  45.48 
 
 
316 aa  236  3e-61  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_007912  Sde_2977  response regulator receiver domain-containing protein  39.23 
 
 
303 aa  234  1.0000000000000001e-60  Saccharophagus degradans 2-40  Bacteria  normal  normal  0.13601 
 
 
-
 
NC_011369  Rleg2_3066  two component transcriptional regulator, LuxR family  41.94 
 
 
305 aa  229  5e-59  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_011666  Msil_2002  two component transcriptional regulator, LuxR family  43.13 
 
 
306 aa  229  5e-59  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_009620  Smed_4179  response regulator receiver protein  40 
 
 
309 aa  228  7e-59  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.15819 
 
 
-
 
NC_007298  Daro_1445  two component LuxR family transcriptional regulator  45.19 
 
 
308 aa  226  3e-58  Dechloromonas aromatica RCB  Bacteria  normal  0.446624  normal 
 
 
-
 
NC_010725  Mpop_3574  two component transcriptional regulator, LuxR family  42.07 
 
 
301 aa  226  4e-58  Methylobacterium populi BJ001  Bacteria  normal  0.0249095  normal 
 
 
-
 
NC_012850  Rleg_3321  two component transcriptional regulator, LuxR family  41.29 
 
 
305 aa  225  7e-58  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.536368 
 
 
-
 
NC_010511  M446_0591  two component LuxR family transcriptional regulator  41.48 
 
 
301 aa  224  1e-57  Methylobacterium sp. 4-46  Bacteria  normal  0.477799  hitchhiker  0.00469436 
 
 
-
 
NC_008825  Mpe_A3585  two component LuxR family transcriptional regulator  45.21 
 
 
306 aa  224  1e-57  Methylibium petroleiphilum PM1  Bacteria  normal  0.295986  normal 
 
 
-
 
NC_008781  Pnap_0979  response regulator receiver protein  41.49 
 
 
336 aa  224  1e-57  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_0652  two component LuxR family transcriptional regulator  40.58 
 
 
305 aa  222  4.9999999999999996e-57  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.0800453  normal  0.813173 
 
 
-
 
NC_011989  Avi_3499  transcriptional regulator LuxR family  42.62 
 
 
312 aa  221  9.999999999999999e-57  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_008740  Maqu_3869  response regulator receiver protein  39.87 
 
 
301 aa  219  3.9999999999999997e-56  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_010172  Mext_3383  response regulator receiver  41.99 
 
 
300 aa  219  6e-56  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_3692  two component transcriptional regulator, LuxR family  42.54 
 
 
300 aa  218  8.999999999999998e-56  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.170876  normal 
 
 
-
 
NC_012791  Vapar_4238  two component transcriptional regulator, LuxR family  39.6 
 
 
356 aa  218  1e-55  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_008752  Aave_3524  two component LuxR family transcriptional regulator  43.87 
 
 
353 aa  218  1e-55  Acidovorax citrulli AAC00-1  Bacteria  normal  0.406085  normal  0.428998 
 
 
-
 
NC_013422  Hneap_1587  two component transcriptional regulator, LuxR family  42.3 
 
 
292 aa  217  2e-55  Halothiobacillus neapolitanus c2  Bacteria  normal  0.522901  n/a   
 
 
-
 
NC_010002  Daci_0218  two component LuxR family transcriptional regulator  40.44 
 
 
339 aa  217  2.9999999999999998e-55  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_3866  response regulator receiver  41.88 
 
 
309 aa  215  7e-55  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.370865  normal 
 
 
-
 
NC_011004  Rpal_1441  two component transcriptional regulator, LuxR family  41.37 
 
 
308 aa  214  9.999999999999999e-55  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_3397  two component LuxR family transcriptional regulator  42.49 
 
 
328 aa  214  1.9999999999999998e-54  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_5514  two component LuxR family transcriptional regulator  40.65 
 
 
305 aa  213  2.9999999999999995e-54  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.211273 
 
 
-
 
NC_007778  RPB_1250  two component LuxR family transcriptional regulator  40.65 
 
 
309 aa  212  7e-54  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.886948  normal 
 
 
-
 
NC_011138  MADE_00878  two-component response regulator  36.86 
 
 
298 aa  212  7e-54  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_007948  Bpro_1354  two component LuxR family transcriptional regulator  40.12 
 
 
349 aa  211  1e-53  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_007948  Bpro_0562  two component LuxR family transcriptional regulator  40.8 
 
 
297 aa  208  9e-53  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_008786  Veis_1731  response regulator receiver protein  38.87 
 
 
361 aa  208  9e-53  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.319975 
 
 
-
 
NC_009654  Mmwyl1_0962  response regulator receiver protein  37.54 
 
 
304 aa  203  3e-51  Marinomonas sp. MWYL1  Bacteria  normal  0.512477  normal 
 
 
-
 
NC_007794  Saro_1665  two component LuxR family transcriptional regulator  41.33 
 
 
307 aa  198  1.0000000000000001e-49  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  n/a   
 
 
-
 
NC_008709  Ping_2984  two component transcriptional regulator, LuxR family protein  38.91 
 
 
295 aa  197  1.0000000000000001e-49  Psychromonas ingrahamii 37  Bacteria  normal  0.43543  normal  0.546259 
 
 
-
 
NC_010571  Oter_1720  two component LuxR family transcriptional regulator  40.13 
 
 
301 aa  180  2.9999999999999997e-44  Opitutus terrae PB90-1  Bacteria  normal  0.162572  normal  0.616267 
 
 
-
 
NC_012791  Vapar_3147  two component transcriptional regulator, LuxR family  48.7 
 
 
302 aa  160  2e-38  Variovorax paradoxus S110  Bacteria  normal  0.235206  n/a   
 
 
-
 
NC_004578  PSPTO_4080  DNA-binding response regulator, LuxR family  61.16 
 
 
222 aa  159  6e-38  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.542388  n/a   
 
 
-
 
NC_010625  Bphy_6559  multi-sensor signal transduction histidine kinase  39.73 
 
 
541 aa  143  4e-33  Burkholderia phymatum STM815  Bacteria  normal  normal  0.59439 
 
 
-
 
NC_010627  Bphy_7700  multi-sensor signal transduction histidine kinase  49.32 
 
 
541 aa  136  5e-31  Burkholderia phymatum STM815  Bacteria  normal  0.163324  normal  0.507763 
 
 
-
 
NC_011884  Cyan7425_0790  multi-sensor signal transduction histidine kinase  52.14 
 
 
566 aa  135  6.0000000000000005e-31  Cyanothece sp. PCC 7425  Bacteria  normal  0.391268  normal 
 
 
-
 
NC_013440  Hoch_2175  response regulator receiver sensor signal transduction histidine kinase  51.64 
 
 
395 aa  133  3e-30  Haliangium ochraceum DSM 14365  Bacteria  normal  0.924768  normal  0.400775 
 
 
-
 
NC_013730  Slin_2507  two component, sigma54 specific, transcriptional regulator, Fis family  46.67 
 
 
488 aa  131  2.0000000000000002e-29  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.182398 
 
 
-
 
NC_013440  Hoch_6548  response regulator receiver sensor signal transduction histidine kinase  40.22 
 
 
397 aa  130  2.0000000000000002e-29  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.543575 
 
 
-
 
NC_011884  Cyan7425_3210  response regulator receiver modulated diguanylate cyclase  48.33 
 
 
337 aa  130  4.0000000000000003e-29  Cyanothece sp. PCC 7425  Bacteria  normal  0.32327  normal  0.712325 
 
 
-
 
NC_014248  Aazo_4229  response regulator receiver sensor signal transduction histidine kinase  49.22 
 
 
383 aa  130  4.0000000000000003e-29  'Nostoc azollae' 0708  Bacteria  normal  0.599633  n/a   
 
 
-
 
NC_010571  Oter_0809  response regulator receiver sensor signal transduction histidine kinase  49.24 
 
 
367 aa  129  8.000000000000001e-29  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_2149  response regulator receiver Signal transduction histidine kinase  42.14 
 
 
407 aa  128  1.0000000000000001e-28  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.142048 
 
 
-
 
NC_010676  Bphyt_6236  multi-sensor signal transduction histidine kinase  41.9 
 
 
553 aa  128  1.0000000000000001e-28  Burkholderia phytofirmans PsJN  Bacteria  normal  normal  0.914679 
 
 
-
 
NC_010551  BamMC406_1236  response regulator receiver sensor signal transduction histidine kinase  43.51 
 
 
386 aa  127  2.0000000000000002e-28  Burkholderia ambifaria MC40-6  Bacteria  normal  0.493129  normal 
 
 
-
 
NC_011146  Gbem_1018  response regulator receiver sensor signal transduction histidine kinase  45.93 
 
 
441 aa  127  3e-28  Geobacter bemidjiensis Bem  Bacteria  hitchhiker  0.00729938  n/a   
 
 
-
 
NC_012918  GM21_3242  response regulator receiver sensor signal transduction histidine kinase  45.19 
 
 
441 aa  127  3e-28  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_010623  Bphy_4530  response regulator receiver sensor signal transduction histidine kinase  49.15 
 
 
386 aa  126  5e-28  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_010814  Glov_1118  response regulator receiver sensor signal transduction histidine kinase  46.32 
 
 
452 aa  124  2e-27  Geobacter lovleyi SZ  Bacteria  hitchhiker  0.000972917  n/a   
 
 
-
 
NC_013161  Cyan8802_1380  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  47.73 
 
 
715 aa  124  2e-27  Cyanothece sp. PCC 8802  Bacteria  normal  0.923401  normal 
 
 
-
 
NC_011726  PCC8801_1350  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  47.73 
 
 
715 aa  124  2e-27  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_007413  Ava_4136  response regulator receiver Signal transduction histidine kinase  46.22 
 
 
440 aa  122  7e-27  Anabaena variabilis ATCC 29413  Bacteria  decreased coverage  0.00000660181  hitchhiker  0.00876613 
 
 
-
 
NC_007413  Ava_2562  response regulator receiver Signal transduction histidine kinase  46.22 
 
 
437 aa  122  9e-27  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_013161  Cyan8802_3359  response regulator receiver sensor signal transduction histidine kinase  46.88 
 
 
395 aa  120  3e-26  Cyanothece sp. PCC 8802  Bacteria  normal  0.361398  normal 
 
 
-
 
NC_011726  PCC8801_2743  response regulator receiver sensor signal transduction histidine kinase  46.88 
 
 
395 aa  120  3e-26  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_009767  Rcas_3134  response regulator receiver protein  50 
 
 
200 aa  120  3e-26  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_011312  VSAL_I2575  chitin degradation sensor protein  44.35 
 
 
1127 aa  119  6e-26  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_011729  PCC7424_0178  response regulator receiver modulated diguanylate cyclase  41.46 
 
 
322 aa  119  7.999999999999999e-26  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.895619 
 
 
-
 
NC_009523  RoseRS_2347  response regulator receiver protein  50 
 
 
202 aa  119  9e-26  Roseiflexus sp. RS-1  Bacteria  normal  0.56815  normal 
 
 
-
 
NC_014248  Aazo_4465  response regulator receiver sensor signal transduction histidine kinase  45 
 
 
437 aa  118  9.999999999999999e-26  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_2382  response regulator receiver modulated metal dependent phosphohydrolase  42.54 
 
 
359 aa  117  1.9999999999999998e-25  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_008554  Sfum_2303  response regulator receiver protein  46.72 
 
 
227 aa  117  3.9999999999999997e-25  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_013161  Cyan8802_1169  response regulator receiver modulated diguanylate cyclase  40.65 
 
 
308 aa  115  6.9999999999999995e-25  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_011726  PCC8801_1139  response regulator receiver modulated diguanylate cyclase  40.65 
 
 
308 aa  115  6.9999999999999995e-25  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_009654  Mmwyl1_1086  response regulator receiver modulated metal dependent phosphohydrolase  46.28 
 
 
331 aa  115  1.0000000000000001e-24  Marinomonas sp. MWYL1  Bacteria  normal  0.226857  hitchhiker  0.0000000112469 
 
 
-
 
NC_007517  Gmet_2999  response regulator receiver (CheY-like) modulated metal dependent phosphohydrolase  44.88 
 
 
361 aa  115  1.0000000000000001e-24  Geobacter metallireducens GS-15  Bacteria  normal  normal  0.669597 
 
 
-
 
NC_014248  Aazo_4225  multi-sensor hybrid histidine kinase  45.9 
 
 
1322 aa  115  1.0000000000000001e-24  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_013216  Dtox_1577  response regulator receiver modulated diguanylate cyclase  41.91 
 
 
314 aa  115  1.0000000000000001e-24  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_011729  PCC7424_2188  response regulator receiver sensor signal transduction histidine kinase  42.97 
 
 
384 aa  114  2.0000000000000002e-24  Cyanothece sp. PCC 7424  Bacteria  n/a    hitchhiker  0.00677544 
 
 
-
 
NC_011729  PCC7424_0984  response regulator receiver modulated diguanylate cyclase  46.09 
 
 
353 aa  114  2.0000000000000002e-24  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.194443 
 
 
-
 
NC_012918  GM21_0360  response regulator receiver protein  48.28 
 
 
204 aa  114  2.0000000000000002e-24  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.0000726536 
 
 
-
 
NC_007413  Ava_3976  response regulator receiver Signal transduction histidine kinase  46.48 
 
 
431 aa  114  3e-24  Anabaena variabilis ATCC 29413  Bacteria  normal  0.0119459  decreased coverage  0.00202838 
 
 
-
 
NC_011726  PCC8801_0820  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  37.5 
 
 
593 aa  113  5e-24  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_008312  Tery_4155  response regulator receiver sensor signal transduction histidine kinase  42.75 
 
 
440 aa  113  5e-24  Trichodesmium erythraeum IMS101  Bacteria  normal  0.50715  normal 
 
 
-
 
NC_008340  Mlg_2429  response regulator receiver modulated metal dependent phosphohydrolase  43.7 
 
 
480 aa  113  5e-24  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal  0.129673 
 
 
-
 
NC_013161  Cyan8802_0849  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  37.5 
 
 
593 aa  113  5e-24  Cyanothece sp. PCC 8802  Bacteria  normal  0.386146  normal 
 
 
-
 
NC_011146  Gbem_0378  response regulator receiver protein  47.41 
 
 
204 aa  113  5e-24  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_013161  Cyan8802_2067  response regulator receiver modulated diguanylate cyclase  41.22 
 
 
317 aa  112  6e-24  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_011729  PCC7424_5086  response regulator receiver modulated diguanylate cyclase  44.53 
 
 
465 aa  112  6e-24  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_007413  Ava_2150  response regulator receiver Signal transduction histidine kinase  44.92 
 
 
443 aa  112  6e-24  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.394463 
 
 
-
 
NC_007520  Tcr_2179  response regulator receiver (CheY-like) modulated metal dependent phosphohydrolase  41.67 
 
 
348 aa  112  6e-24  Thiomicrospira crunogena XCL-2  Bacteria  normal  0.378064  n/a   
 
 
-
 
NC_011726  PCC8801_2041  response regulator receiver modulated diguanylate cyclase  41.22 
 
 
317 aa  112  6e-24  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_009457  VC0395_A0150  sensory box sensor histidine kinase/response regulator  43.55 
 
 
1177 aa  112  6e-24  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_010681  Bphyt_2397  two component transcriptional regulator, AraC family  38.93 
 
 
269 aa  111  1.0000000000000001e-23  Burkholderia phytofirmans PsJN  Bacteria  normal  0.92999  normal  0.351016 
 
 
-
 
NC_008345  Sfri_2505  response regulator receiver modulated metal dependent phosphohydrolase  45.8 
 
 
331 aa  111  1.0000000000000001e-23  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_0871  response regulator receiver modulated metal dependent phosphohydrolase  47.41 
 
 
338 aa  111  1.0000000000000001e-23  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_009665  Shew185_0836  response regulator receiver modulated metal dependent phosphohydrolase  47.41 
 
 
338 aa  111  2.0000000000000002e-23  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009052  Sbal_3504  response regulator receiver modulated metal dependent phosphohydrolase  47.41 
 
 
338 aa  111  2.0000000000000002e-23  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009901  Spea_0629  response regulator receiver modulated metal dependent phosphohydrolase  46.55 
 
 
339 aa  111  2.0000000000000002e-23  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_009438  Sputcn32_3141  response regulator receiver modulated metal dependent phosphohydrolase  31.88 
 
 
338 aa  110  2.0000000000000002e-23  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_008576  Mmc1_3071  response regulator receiver protein  42.86 
 
 
390 aa  111  2.0000000000000002e-23  Magnetococcus sp. MC-1  Bacteria  normal  hitchhiker  0.000442652 
 
 
-
 
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