More than 300 homologs were found in PanDaTox collection
for query gene Bamb_6368 on replicon NC_008392
Organism: Burkholderia ambifaria AMMD



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008392  Bamb_6368  two component AraC family transcriptional regulator  100 
 
 
271 aa  542  1e-153  Burkholderia ambifaria AMMD  Bacteria  normal  0.434467  normal 
 
 
-
 
NC_010557  BamMC406_6071  two component AraC family transcriptional regulator  98.52 
 
 
271 aa  535  1e-151  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_007509  Bcep18194_C7173  two component AraC family transcriptional regulator  86.35 
 
 
268 aa  466  9.999999999999999e-131  Burkholderia sp. 383  Bacteria  normal  normal  0.495812 
 
 
-
 
NC_008062  Bcen_6528  two component AraC family transcriptional regulator  86.35 
 
 
271 aa  452  1.0000000000000001e-126  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.485144  n/a   
 
 
-
 
NC_008544  Bcen2424_6762  two component AraC family transcriptional regulator  86.35 
 
 
271 aa  452  1.0000000000000001e-126  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.295507 
 
 
-
 
NC_010512  Bcenmc03_6350  two component AraC family transcriptional regulator  85.24 
 
 
271 aa  446  1.0000000000000001e-124  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.787195  normal  0.900493 
 
 
-
 
NC_010681  Bphyt_2397  two component transcriptional regulator, AraC family  72.52 
 
 
269 aa  365  1e-100  Burkholderia phytofirmans PsJN  Bacteria  normal  0.92999  normal  0.351016 
 
 
-
 
NC_010512  Bcenmc03_6477  two component AraC family transcriptional regulator  63.98 
 
 
277 aa  320  1.9999999999999998e-86  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.0923467 
 
 
-
 
NC_008544  Bcen2424_5986  two component AraC family transcriptional regulator  63.98 
 
 
277 aa  320  1.9999999999999998e-86  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.0117191 
 
 
-
 
NC_007509  Bcep18194_C7377  two component AraC family transcriptional regulator  63.67 
 
 
278 aa  319  3e-86  Burkholderia sp. 383  Bacteria  normal  0.0377301  normal  0.284562 
 
 
-
 
NC_008062  Bcen_5621  two component AraC family transcriptional regulator  63.98 
 
 
277 aa  318  3.9999999999999996e-86  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.289619  n/a   
 
 
-
 
NC_010557  BamMC406_5929  two component AraC family transcriptional regulator  64.31 
 
 
277 aa  317  1e-85  Burkholderia ambifaria MC40-6  Bacteria  normal  0.473719  normal 
 
 
-
 
NC_008392  Bamb_6198  two component AraC family transcriptional regulator  64.17 
 
 
277 aa  317  2e-85  Burkholderia ambifaria AMMD  Bacteria  normal  normal 
 
 
-
 
NC_012560  Avin_41160  Response regulator  48.98 
 
 
261 aa  229  3e-59  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_4605  two component transcriptional regulator, AraC family  50.39 
 
 
271 aa  222  4e-57  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_4604  two component transcriptional regulator, AraC family  45.42 
 
 
281 aa  198  7e-50  Variovorax paradoxus S110  Bacteria  normal  0.514268  n/a   
 
 
-
 
NC_013037  Dfer_0812  histidine kinase  32.81 
 
 
1335 aa  134  9.999999999999999e-31  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.127825  normal 
 
 
-
 
NC_013061  Phep_2832  ATP-binding region ATPase domain protein  31.87 
 
 
1340 aa  131  1.0000000000000001e-29  Pedobacter heparinus DSM 2366  Bacteria  normal  0.0201204  hitchhiker  0.008817 
 
 
-
 
NC_007413  Ava_2149  response regulator receiver Signal transduction histidine kinase  50 
 
 
407 aa  130  3e-29  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.142048 
 
 
-
 
NC_013730  Slin_1735  histidine kinase  33.2 
 
 
1343 aa  129  7.000000000000001e-29  Spirosoma linguale DSM 74  Bacteria  normal  0.260049  normal 
 
 
-
 
NC_013730  Slin_0550  histidine kinase  36.63 
 
 
1388 aa  129  7.000000000000001e-29  Spirosoma linguale DSM 74  Bacteria  normal  0.23656  normal  0.89256 
 
 
-
 
NC_007413  Ava_2562  response regulator receiver Signal transduction histidine kinase  47.46 
 
 
437 aa  127  1.0000000000000001e-28  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_013061  Phep_1317  ATP-binding region ATPase domain protein  31.87 
 
 
1370 aa  125  6e-28  Pedobacter heparinus DSM 2366  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_6369  histidine kinase  30.61 
 
 
1366 aa  125  8.000000000000001e-28  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_3199  two component transcriptional regulator, AraC family  32.79 
 
 
940 aa  124  2e-27  Spirosoma linguale DSM 74  Bacteria  normal  0.157032  normal  0.236848 
 
 
-
 
NC_013132  Cpin_5544  histidine kinase  31.85 
 
 
1306 aa  124  2e-27  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.122286  normal 
 
 
-
 
NC_013061  Phep_2824  ATP-binding region ATPase domain protein  27.73 
 
 
1374 aa  122  6e-27  Pedobacter heparinus DSM 2366  Bacteria  normal  normal 
 
 
-
 
NC_011729  PCC7424_2267  two component transcriptional regulator, AraC family  31.25 
 
 
265 aa  122  7e-27  Cyanothece sp. PCC 7424  Bacteria  n/a    hitchhiker  0.00808217 
 
 
-
 
NC_014248  Aazo_4465  response regulator receiver sensor signal transduction histidine kinase  46.28 
 
 
437 aa  122  7e-27  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_008228  Patl_1836  two component AraC family transcriptional regulator  31.45 
 
 
1341 aa  122  9e-27  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_013730  Slin_4321  histidine kinase  33.58 
 
 
1355 aa  121  9.999999999999999e-27  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.295286 
 
 
-
 
NC_013730  Slin_6436  histidine kinase  30.23 
 
 
1418 aa  120  1.9999999999999998e-26  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_013162  Coch_1470  histidine kinase  31.4 
 
 
1376 aa  120  1.9999999999999998e-26  Capnocytophaga ochracea DSM 7271  Bacteria  normal  0.0500626  n/a   
 
 
-
 
NC_011884  Cyan7425_3210  response regulator receiver modulated diguanylate cyclase  44.44 
 
 
337 aa  120  3e-26  Cyanothece sp. PCC 7425  Bacteria  normal  0.32327  normal  0.712325 
 
 
-
 
NC_007958  RPD_3866  response regulator receiver  37.5 
 
 
309 aa  119  3.9999999999999996e-26  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.370865  normal 
 
 
-
 
NC_007912  Sde_2977  response regulator receiver domain-containing protein  45.45 
 
 
303 aa  119  7e-26  Saccharophagus degradans 2-40  Bacteria  normal  normal  0.13601 
 
 
-
 
NC_011004  Rpal_1441  two component transcriptional regulator, LuxR family  34.39 
 
 
308 aa  119  7e-26  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_0124  response regulator receiver Signal transduction histidine kinase  46.03 
 
 
470 aa  117  9.999999999999999e-26  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_011726  PCC8801_1350  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  44.19 
 
 
715 aa  118  9.999999999999999e-26  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_007952  Bxe_B1713  two component LuxR family transcriptional regulator  45.45 
 
 
361 aa  118  9.999999999999999e-26  Burkholderia xenovorans LB400  Bacteria  normal  0.310925  normal 
 
 
-
 
NC_013161  Cyan8802_1380  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  46.15 
 
 
715 aa  118  9.999999999999999e-26  Cyanothece sp. PCC 8802  Bacteria  normal  0.923401  normal 
 
 
-
 
NC_009654  Mmwyl1_0962  response regulator receiver protein  46.67 
 
 
304 aa  117  1.9999999999999998e-25  Marinomonas sp. MWYL1  Bacteria  normal  0.512477  normal 
 
 
-
 
NC_011729  PCC7424_5086  response regulator receiver modulated diguanylate cyclase  44.83 
 
 
465 aa  117  1.9999999999999998e-25  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_010625  Bphy_6559  multi-sensor signal transduction histidine kinase  48 
 
 
541 aa  117  1.9999999999999998e-25  Burkholderia phymatum STM815  Bacteria  normal  normal  0.59439 
 
 
-
 
NC_007413  Ava_2150  response regulator receiver Signal transduction histidine kinase  47.46 
 
 
443 aa  117  3e-25  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.394463 
 
 
-
 
NC_014248  Aazo_3807  AraC family two component transcriptional regulator  26.17 
 
 
289 aa  116  3e-25  'Nostoc azollae' 0708  Bacteria  normal  0.536318  n/a   
 
 
-
 
NC_010581  Bind_0974  two component LuxR family transcriptional regulator  46.67 
 
 
309 aa  116  3e-25  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.883175  normal  0.426964 
 
 
-
 
NC_007778  RPB_1250  two component LuxR family transcriptional regulator  36 
 
 
309 aa  116  3.9999999999999997e-25  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.886948  normal 
 
 
-
 
NC_010627  Bphy_7700  multi-sensor signal transduction histidine kinase  47.2 
 
 
541 aa  115  5e-25  Burkholderia phymatum STM815  Bacteria  normal  0.163324  normal  0.507763 
 
 
-
 
NC_013730  Slin_2507  two component, sigma54 specific, transcriptional regulator, Fis family  45.3 
 
 
488 aa  115  5e-25  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.182398 
 
 
-
 
NC_009485  BBta_0652  two component LuxR family transcriptional regulator  47.9 
 
 
305 aa  115  6e-25  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.0800453  normal  0.813173 
 
 
-
 
NC_013037  Dfer_1944  histidine kinase  33.6 
 
 
1278 aa  115  6.9999999999999995e-25  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.866742 
 
 
-
 
NC_013161  Cyan8802_1510  response regulator receiver sensor signal transduction histidine kinase  32.67 
 
 
374 aa  115  6.9999999999999995e-25  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_011726  PCC8801_1483  response regulator receiver sensor signal transduction histidine kinase  32.67 
 
 
374 aa  115  6.9999999999999995e-25  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013730  Slin_2107  two component transcriptional regulator, AraC family  28.4 
 
 
1349 aa  115  7.999999999999999e-25  Spirosoma linguale DSM 74  Bacteria  decreased coverage  0.000288147  normal  0.419692 
 
 
-
 
NC_008709  Ping_0978  response regulator receiver modulated diguanylate cyclase  44.83 
 
 
322 aa  114  1.0000000000000001e-24  Psychromonas ingrahamii 37  Bacteria  normal  0.97362  decreased coverage  0.00116316 
 
 
-
 
NC_004578  PSPTO_4080  DNA-binding response regulator, LuxR family  48.78 
 
 
222 aa  113  3e-24  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.542388  n/a   
 
 
-
 
NC_013037  Dfer_1754  histidine kinase  31.35 
 
 
1344 aa  113  3e-24  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.176495  normal 
 
 
-
 
NC_013440  Hoch_6548  response regulator receiver sensor signal transduction histidine kinase  45.31 
 
 
397 aa  113  4.0000000000000004e-24  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.543575 
 
 
-
 
NC_011729  PCC7424_2188  response regulator receiver sensor signal transduction histidine kinase  42.52 
 
 
384 aa  113  4.0000000000000004e-24  Cyanothece sp. PCC 7424  Bacteria  n/a    hitchhiker  0.00677544 
 
 
-
 
NC_012791  Vapar_4238  two component transcriptional regulator, LuxR family  46.4 
 
 
356 aa  112  5e-24  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_4136  response regulator receiver Signal transduction histidine kinase  50 
 
 
440 aa  112  5e-24  Anabaena variabilis ATCC 29413  Bacteria  decreased coverage  0.00000660181  hitchhiker  0.00876613 
 
 
-
 
NC_007413  Ava_4889  two component AraC family transcriptional regulator  28.52 
 
 
288 aa  112  5e-24  Anabaena variabilis ATCC 29413  Bacteria  normal  0.298891  hitchhiker  0.00503781 
 
 
-
 
NC_007520  Tcr_2179  response regulator receiver (CheY-like) modulated metal dependent phosphohydrolase  44.54 
 
 
348 aa  112  5e-24  Thiomicrospira crunogena XCL-2  Bacteria  normal  0.378064  n/a   
 
 
-
 
NC_011884  Cyan7425_0790  multi-sensor signal transduction histidine kinase  44.83 
 
 
566 aa  112  6e-24  Cyanothece sp. PCC 7425  Bacteria  normal  0.391268  normal 
 
 
-
 
NC_011726  PCC8801_0820  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  42.64 
 
 
593 aa  112  7.000000000000001e-24  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013161  Cyan8802_0849  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  42.64 
 
 
593 aa  112  7.000000000000001e-24  Cyanothece sp. PCC 8802  Bacteria  normal  0.386146  normal 
 
 
-
 
NC_011831  Cagg_1006  response regulator receiver modulated diguanylate cyclase  50.43 
 
 
312 aa  112  8.000000000000001e-24  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_011884  Cyan7425_2947  multi-sensor signal transduction histidine kinase  43.1 
 
 
503 aa  112  8.000000000000001e-24  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_011726  PCC8801_2052  response regulator receiver modulated diguanylate cyclase  42.4 
 
 
481 aa  111  1.0000000000000001e-23  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_008312  Tery_4155  response regulator receiver sensor signal transduction histidine kinase  46.55 
 
 
440 aa  111  1.0000000000000001e-23  Trichodesmium erythraeum IMS101  Bacteria  normal  0.50715  normal 
 
 
-
 
NC_010571  Oter_3794  response regulator receiver sensor signal transduction histidine kinase  44.83 
 
 
376 aa  111  1.0000000000000001e-23  Opitutus terrae PB90-1  Bacteria  normal  0.0277983  normal  0.543799 
 
 
-
 
NC_008740  Maqu_3869  response regulator receiver protein  44.17 
 
 
301 aa  111  1.0000000000000001e-23  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_013422  Hneap_1587  two component transcriptional regulator, LuxR family  45 
 
 
292 aa  110  2.0000000000000002e-23  Halothiobacillus neapolitanus c2  Bacteria  normal  0.522901  n/a   
 
 
-
 
NC_013161  Cyan8802_2076  response regulator receiver modulated diguanylate cyclase  42.4 
 
 
481 aa  111  2.0000000000000002e-23  Cyanothece sp. PCC 8802  Bacteria  hitchhiker  0.00773841  normal 
 
 
-
 
NC_014248  Aazo_5066  response regulator receiver modulated diguanylate cyclase  41.09 
 
 
338 aa  110  2.0000000000000002e-23  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_013037  Dfer_0536  histidine kinase  29.72 
 
 
1324 aa  111  2.0000000000000002e-23  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.0692259  normal  0.421547 
 
 
-
 
NC_010511  M446_0591  two component LuxR family transcriptional regulator  45 
 
 
301 aa  110  2.0000000000000002e-23  Methylobacterium sp. 4-46  Bacteria  normal  0.477799  hitchhiker  0.00469436 
 
 
-
 
NC_002950  PG1797  DNA-binding response regulator/sensor histidine kinase  28.52 
 
 
961 aa  110  3e-23  Porphyromonas gingivalis W83  Bacteria  n/a    normal 
 
 
-
 
NC_009901  Spea_0629  response regulator receiver modulated metal dependent phosphohydrolase  41.8 
 
 
339 aa  110  3e-23  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_013730  Slin_2666  two component transcriptional regulator, AraC family  29.03 
 
 
251 aa  110  3e-23  Spirosoma linguale DSM 74  Bacteria  normal  0.21287  normal  0.224489 
 
 
-
 
NC_013730  Slin_6047  response regulator receiver sensor hybrid histidine kinase  31.15 
 
 
677 aa  110  3e-23  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_007955  Mbur_0695  response regulator receiver  45.45 
 
 
170 aa  109  4.0000000000000004e-23  Methanococcoides burtonii DSM 6242  Archaea  normal  0.412637  n/a   
 
 
-
 
NC_008781  Pnap_0979  response regulator receiver protein  45.6 
 
 
336 aa  109  4.0000000000000004e-23  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_013216  Dtox_1577  response regulator receiver modulated diguanylate cyclase  45.24 
 
 
314 aa  109  5e-23  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_008576  Mmc1_3408  response regulator receiver modulated metal dependent phosphohydrolase  45.16 
 
 
346 aa  109  5e-23  Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_3574  two component transcriptional regulator, LuxR family  45.3 
 
 
301 aa  109  6e-23  Methylobacterium populi BJ001  Bacteria  normal  0.0249095  normal 
 
 
-
 
NC_008340  Mlg_2429  response regulator receiver modulated metal dependent phosphohydrolase  44.17 
 
 
480 aa  109  6e-23  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal  0.129673 
 
 
-
 
NC_011728  BbuZS7_0421  response regulatory protein  41.18 
 
 
305 aa  109  6e-23  Borrelia burgdorferi ZS7  Bacteria  normal  0.972098  n/a   
 
 
-
 
NC_009092  Shew_3199  response regulator receiver modulated metal dependent phosphohydrolase  41.8 
 
 
339 aa  108  6e-23  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_011726  PCC8801_2743  response regulator receiver sensor signal transduction histidine kinase  42.02 
 
 
395 aa  108  7.000000000000001e-23  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013161  Cyan8802_3359  response regulator receiver sensor signal transduction histidine kinase  42.02 
 
 
395 aa  108  7.000000000000001e-23  Cyanothece sp. PCC 8802  Bacteria  normal  0.361398  normal 
 
 
-
 
NC_011666  Msil_2002  two component transcriptional regulator, LuxR family  45 
 
 
306 aa  108  9.000000000000001e-23  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_010571  Oter_0809  response regulator receiver sensor signal transduction histidine kinase  45.69 
 
 
367 aa  108  9.000000000000001e-23  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
NC_010676  Bphyt_6236  multi-sensor signal transduction histidine kinase  48.72 
 
 
553 aa  108  1e-22  Burkholderia phytofirmans PsJN  Bacteria  normal  normal  0.914679 
 
 
-
 
NC_011989  Avi_3499  transcriptional regulator LuxR family  45 
 
 
312 aa  108  1e-22  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_013037  Dfer_1574  histidine kinase  31.64 
 
 
1378 aa  108  1e-22  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.455228  normal 
 
 
-
 
NC_011729  PCC7424_0984  response regulator receiver modulated diguanylate cyclase  44.83 
 
 
353 aa  108  1e-22  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.194443 
 
 
-
 
NC_009441  Fjoh_3862  histidine kinase  27.31 
 
 
1384 aa  107  2e-22  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013037  Dfer_1604  two component transcriptional regulator, AraC family  33.2 
 
 
904 aa  107  2e-22  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal 
 
 
-
 
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