| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Slin_2107 |
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| Symbol | |
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| ID | 8725845 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Spirosoma linguale DSM 74 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013730 |
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| Strand | + |
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| Start bp | 2545026 |
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| End bp | 2549075 |
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| Gene Length | 4050 bp |
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| Protein Length | 1349 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | |
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| Product | two component transcriptional regulator, AraC family |
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| Protein accession | YP_003386941 |
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| Protein GI | 284037011 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.000288147 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 0.419692 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTCTTTA AACGTTTACT AGTTCTCCTT TGGCTGTGGT GGCCATGCAT CGTTTCAGGC
CAGTCGGGTA AGCTGTTCAC GGTCGAAACG GGCCTGTCGG GCAGTCTGGT CACGGACATC
CATCAAGACC AGAGTGGCTT TGTCTGGATA GCCACCGAAG ACGGATTGAA CCGATTCGAC
GGGATAAAAT TCACGGTCTA CCAGCACAGC AAAAAAGATA CGACCAGCCT GCTGAACAAC
CAGATTCATG CGCTCTTTGC CGACAAAAGC GGGCGCATGT ATGTTGGCTC CACCGAAGGG
CTCCAATATT ACGACCCGGC CACCGATGCC TTCCACACCA TACCGCTAAA ACTGCCCAAC
GGGCAATCGA TCAACGCCAG TGTGTCGACC CTGTGCCAGC GAAAAAATGG CGATGTGCTG
GTGGGCACCT CCGGTCACGG CACCTTCAAA CTAATCCGAA AGGGCCCCCT CTTGTTTGGC
CGGAAAGTAC TGGCAAATGC GCCCAGCGAA ATAATTATCA GGATTCTGGA GGATACCGAG
CAAAATCTCT GGGTATCGAC GGAAGATAAG GGCCTCTATC GATTCAGCGG CCAGTCGGTG
AACGCGTATT TCGTATCCAA GAAATCGCAG AACAACATCA TCAGCAGCAT CTGCCAGGAT
CGTTATGGAC GGCTGTTTGT GGGCAACATG AGCAGTGGTT TGTACCGCTA CGACCCGGCC
AGTAACACCT TCCTGTCGAT TCCTTACAAC GGGCGCACCG ACCTGCCGGT GGCCGATCTG
CTCGTCAATC GAAACAATCA GATCGTTGTG GCCACCAGCG GGAAAGGCAT GAAGTATTTC
GATCCGGTGT CCGACAAAAT TCTGGACCTG GAATCCAGCG TGACCAGCTT CGATTTTTCG
CGAACCAAAG TGAACACCAT GCTGGAAGAT CAGGCCGGTA ACATCTGGCT TGGTATTTAT
CAGAAAGGCC TGCTGCTGCT GGCGGGTAAC ACCAACCGCT TCGGGTATAT TGGCTACAAA
TCGGTGAGTC GCAAGTCGAT TGGATCGAGT GCCGTTATGG CTCTGACGCA GGATACGCAG
GGAACCGTTT GGGTAGGCAC CGACAGCGAT GGCCTGTTTG CCTTACCGGC CACCAGCAAC
GCCAGTGTTC ATTACCTGAC GGATAAGGAA GGCGGTACGG CCCCATCGAA CATTCTGACG
ATTCACGAGG ACTCCCAAAA AAATCTGTGG CTCGGCTCGT ACCTGACGGG CTTGTCCCGC
TTCGATCGCA ACACCGGGAA AAGCACCTAC ATCGACAAGC TGGTCGATAA ACGGGGCGAC
AACGTACAGC GTGTGTTCAG TATTAAGGAA GATGCCCGCC AACGGCTTTG GATCGGCACG
ATGGGTTCCG GTGTTTTCCA GCTGGACCTA CGGTCGGGGG CGGTCAAAAA CTTTGAAGCC
TTACCCGGCA AGCTCTACCG GCCCGAACTC AACTACATTC CGAACAGCTG GATCAACTGC
CTGCTCGTTA CGAAAGACAA TAAACTATTC ATCGGCACCT TCGACGGGCT GGGCTGTCTG
GACCTCGACA CCGAAAATTT CGTATCTACG CTGGGTACGA ATCGGTTGAT GGCCGGTACC
GTCGTGTACT CACTCTACGA AGACAATAAG GGCAATTTGT GGATAGGCAC GTCGCAGGGA
CTGAAAAAAA TGAACCGTTC GACGAAGGAA ATCACCTCGT TCGACGCGGA CCAGGGCTTA
CCCGGCAACT TCATCTGGGC CATACAAGGT GATAAGATGG GCGATCTCTG GCTCAGCACC
AACCGGGGAC TTTCGAAGAT GGATGTCGAC TCCAGCACGT TCACTAATTT CTATTCCTCG
GATGGGCTGC AGGGGAATGA ATTTAGTCGG GGAGCCTCGC TCAACACCAG CAGCGGGGAG
TTGTTTTTCG GTGGCGTGAA CGGCATTTCC TATTTCAAGC CCGACGAAGT CCGCGTTGCC
AACAAGCGGC TGACGGTGCG AATCGTTGAC CTGTTTATCC GAGACAAACC CGTTAAGAAG
GGAATGCTGT CGGGCAGTTT CCAAGTGGTC GATACCACCG TTACGAACGC TACCGAATTT
AATCTGGCTC ACCATGATAA CTCGTTTACG CTGGAATTCT CGACCATGGA TTTCATCGAT
GCTGAGCGGG TAGCCTACCA ATATTCAATA AACAACAACG ATTGGGAGGA ATTAAGACCC
GGTTCTAACC GGCTAACCTT CGATAATCTG TCGCCGGGCC GGTACGAATT TCAGCTACGG
GCAAAATTCA ACAGCGCCGT TTCAGAGATT CGGCAGGTAA CGGTCATCGT CCATCCGGTC
TGGTATTTAT CGACCTGGGC TAAACTTGTT TACGCGCTAC TCTTCCTGTT GCTGGGTATA
CTGATTGCCC GAATTATCAA AAACCGGCGA CAGGCAAAAG CGGAATTTCT GGCGCACCAG
CGTCAGGAAG AAATCAACGA AGCCAAGCTT CAGTTTTTCA TAAACATCGC CCATGAGATA
CGGACTCCCC TAACGCTGGT GGTCAGTCCG CTGCAAAAAC TCATTACTAC CGATCAGAAC
GAGGAACGCG GCCATCTGTA CGACATTATG GGGCGTAACA CAAAACGAAT ACTGGATCTG
GTGAACCAGC TCATGGACAT CCGGAAAATT GAGAAGGGGC AGATGACGCT GCAACTCGCC
CAGATTGAGA TGACCCGGTT TACGAAAGAA GTTTGTCAGC TTTTTGAGGA ACAGATTCTT
TCGAAACAAA TTCAGTTTAT CCTGGACGTT CCGCCAGAGC GGATTTTTGC CCGCATCGAC
CCGCAGAATT TCGACAAAGT ACTGATCAAT GTATTGTCCA ATGCGTTCAA ATTTACCCCT
TCTGGCGGCA CGATCCGGGT GGCGCTGACC GTGGGCCATT CTGAAACGGC GGATAGTCAA
CCCGATTTAG CGATTGCCAT CGAAGATTCG GGACATTGCA TCAGTGAGCC GGAGACCGAA
CGAATATTCG AATGTTTTTA TCAATCCGAA GAACACCGGG GGTATAATCA GCAGGGTACG
GGCATTGGTC TCCATCTGGT AAAGCAACTG GTTGAGTTGC ACGGGGGCAG CATCAAAGCC
GAAAATATGG ACCCGGTCGG TTGTCGTTTT CTGATCACCT TACCGCTCGA ATCGGCTGTT
GACGAGACAG CGGCACCGGT GGCAGGATTG CCTGTCGGCC ATCACCAATT GCCGGAGTTG
GCAGAGAATG GCCAGACCGA AGTGAAATCC CGGAAGAAAG CCCGTCGTAT CGTTATTGCC
GACGACGACA CGGAGATCTG CCATTACCTC ACGGATGAAT TATCGGGCGA GTACACGATT
TTTGCCTATG CCAATGGCGA GGATGCGTAT AAAGGAATCG TGAGAGAAAA ACCCGATCTG
GTGGTCAGTG ACGTCATGAT GCCGGTAATG GACGGAATGG CCCTCTGCCG AAAGTTGCGG
GCAAATCCAC TGGTTAACCA CATACCCGTT ATTCTGCTGA CGGCCAAAAC GGAGGAGTCG
AGTAATGCAC TGGGATTTGA ATTAGGAGCC GACGCTTACA TCACCAAACC GTTCAACATC
GACATACTGT CGAAAACAAT TAAAAGCCTG ATCCGAAATC GGCAGATCAT CCTGAACAAT
GAAAGCGAGC AGCAGTATCA GGAGGAGTTC ATTTCGAAGG TCAGTATCAA ATCCGCCGAT
ACAAAGCTCC TGGAAAAAGT ACACGCCCTG ATCAATAAAA ACCTGTCTAA CCCCGACTTA
AGTGTCGAGA TGATTGCCGG TGAAATTGGT ATAAGCCGGG TACACCTTCA TCGGAAATTA
AAAGAGTTGA CAAACTCGAC AACGCGGGAT TTAATCAGGC ATATCCGACT AAAACAGGCG
GCTGATCTGC TGACTACGAA GGGATTGACG GTTTCGGAAG TCGCCTTTGC CACGGGCTTT
GCGAATGTGA ATAACTTTTC GGTGTCCTTC AAAGAATTGT ACGGTGTATC GCCCGCTCAC
TATGCCGAAC AACAGTTGGT AAAACATTGA
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| Protein sequence | MLFKRLLVLL WLWWPCIVSG QSGKLFTVET GLSGSLVTDI HQDQSGFVWI ATEDGLNRFD
GIKFTVYQHS KKDTTSLLNN QIHALFADKS GRMYVGSTEG LQYYDPATDA FHTIPLKLPN
GQSINASVST LCQRKNGDVL VGTSGHGTFK LIRKGPLLFG RKVLANAPSE IIIRILEDTE
QNLWVSTEDK GLYRFSGQSV NAYFVSKKSQ NNIISSICQD RYGRLFVGNM SSGLYRYDPA
SNTFLSIPYN GRTDLPVADL LVNRNNQIVV ATSGKGMKYF DPVSDKILDL ESSVTSFDFS
RTKVNTMLED QAGNIWLGIY QKGLLLLAGN TNRFGYIGYK SVSRKSIGSS AVMALTQDTQ
GTVWVGTDSD GLFALPATSN ASVHYLTDKE GGTAPSNILT IHEDSQKNLW LGSYLTGLSR
FDRNTGKSTY IDKLVDKRGD NVQRVFSIKE DARQRLWIGT MGSGVFQLDL RSGAVKNFEA
LPGKLYRPEL NYIPNSWINC LLVTKDNKLF IGTFDGLGCL DLDTENFVST LGTNRLMAGT
VVYSLYEDNK GNLWIGTSQG LKKMNRSTKE ITSFDADQGL PGNFIWAIQG DKMGDLWLST
NRGLSKMDVD SSTFTNFYSS DGLQGNEFSR GASLNTSSGE LFFGGVNGIS YFKPDEVRVA
NKRLTVRIVD LFIRDKPVKK GMLSGSFQVV DTTVTNATEF NLAHHDNSFT LEFSTMDFID
AERVAYQYSI NNNDWEELRP GSNRLTFDNL SPGRYEFQLR AKFNSAVSEI RQVTVIVHPV
WYLSTWAKLV YALLFLLLGI LIARIIKNRR QAKAEFLAHQ RQEEINEAKL QFFINIAHEI
RTPLTLVVSP LQKLITTDQN EERGHLYDIM GRNTKRILDL VNQLMDIRKI EKGQMTLQLA
QIEMTRFTKE VCQLFEEQIL SKQIQFILDV PPERIFARID PQNFDKVLIN VLSNAFKFTP
SGGTIRVALT VGHSETADSQ PDLAIAIEDS GHCISEPETE RIFECFYQSE EHRGYNQQGT
GIGLHLVKQL VELHGGSIKA ENMDPVGCRF LITLPLESAV DETAAPVAGL PVGHHQLPEL
AENGQTEVKS RKKARRIVIA DDDTEICHYL TDELSGEYTI FAYANGEDAY KGIVREKPDL
VVSDVMMPVM DGMALCRKLR ANPLVNHIPV ILLTAKTEES SNALGFELGA DAYITKPFNI
DILSKTIKSL IRNRQIILNN ESEQQYQEEF ISKVSIKSAD TKLLEKVHAL INKNLSNPDL
SVEMIAGEIG ISRVHLHRKL KELTNSTTRD LIRHIRLKQA ADLLTTKGLT VSEVAFATGF
ANVNNFSVSF KELYGVSPAH YAEQQLVKH
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