Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_4604 |
Symbol | |
ID | 7973302 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 4889094 |
End bp | 4889939 |
Gene Length | 846 bp |
Protein Length | 281 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 644795188 |
Product | two component transcriptional regulator, AraC family |
Protein accession | YP_002946475 |
Protein GI | 239817565 |
COG category | [K] Transcription |
COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.514268 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCATATT GGTCACCCCC GGAGCCCCGG AGAGTTCGTC TTCTGGTGGT CGACGAAGGC GTCGACGAAG GCGTCGACGA ACTCAAGCCC TTGCTGGAAA CGCTACGGTG CGCCGGCTAC GGCATCACCC ACGCTTTCGG CGCGATGGAA GGCTATCGGC GCGCGACGGC GCTGCAGATG GACCTGGTAC TGCTCGACGT GGGTCCGGGC AGCACCGACG GGTTCGCCGC CTGCCGCCTG CTGAAGGCCG ACCCGGCCAC TGCGGACATT CCGGTGATCT TCCTGACCTC CTCGGCCAGC TTGGAAGAGC GCTTGACGGG CCTGCGGGCC GGCGCGGTCG ACTACATCGT GAAGCCCTTC GATCCGGCCG AGGTGATGGC CCGGGTCGAA ATTCATCTGG CACTGGCCGA ATCCCGCAGG TCGCGCATTG CCCCTGCCAC AAGATCTGCG TCCCCAACCG ACCGCCCTGC GACGAACGAT GACGGCGCGC CGGGCTCGGA CGTGGACCGC ATGCTCATGC AGGCGGCGGA GCGACTGATC CTCGCCGACC TGAGCCATGT ATTGCCGCTG CGCGAACTGG CTGCGCGCGT GGGCACGCAC GAGAAGCGCT TGTCGCGCGT GTTCAAGGAA CTGGCGAACC GCACGGTCTT CGAGTTCGTA CGCGAGGCAC GGCTGCACGA GGCGCATCGC CTGCTGCTCG AATCGGCCAT GCGCATCGAG GAGATCGCCG CGGCGGTGGG GTTCTCGAGC GCCGCAAATT TTTCGACGGC ATTTCGCGAG TACTTCAACT GCACGCCGTC CGCCTGCCGC CAGGCCGGCG TGGGCCGCCG CGCCCCCGAC GCGTGA
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Protein sequence | MSYWSPPEPR RVRLLVVDEG VDEGVDELKP LLETLRCAGY GITHAFGAME GYRRATALQM DLVLLDVGPG STDGFAACRL LKADPATADI PVIFLTSSAS LEERLTGLRA GAVDYIVKPF DPAEVMARVE IHLALAESRR SRIAPATRSA SPTDRPATND DGAPGSDVDR MLMQAAERLI LADLSHVLPL RELAARVGTH EKRLSRVFKE LANRTVFEFV REARLHEAHR LLLESAMRIE EIAAAVGFSS AANFSTAFRE YFNCTPSACR QAGVGRRAPD A
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