| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_0812 |
|---|
| Symbol | |
|---|
| ID | 8224381 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dyadobacter fermentans DSM 18053 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013037 |
|---|
| Strand | + |
|---|
| Start bp | 964611 |
|---|
| End bp | 968618 |
|---|
| Gene Length | 4008 bp |
|---|
| Protein Length | 1335 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 644928683 |
|---|
| Product | histidine kinase |
|---|
| Protein accession | YP_003085237 |
|---|
| Protein GI | 255034616 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.127825 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGCGTGG TGATTTTCCT TTTCATCATA ACCTGTTTGC GCGCCCTCGG CCAGGAGAAG
TTTTTCAGTA CGATTTCCGT CCGCGACGGG CTGCCTACCA ATCTCATGAA TGCCATCGCG
CAGGACCGCA ACGATTTCAT CTGGATTGCC ACTGCCGACG GATTGGCGCG TTACGATGGC
TATCATTTCA GGGTTTTCAA AAAAGGGGAC GACGCTCATT CCATTCCCAG CAACGGCGTC
CAGGCGATCT GTCCCGACGG CGAGGAGCTG TGGGTAGGGA CGGTGAAGGG GCTGTGCAAG
ATCAACACGA TCACATTCAA AGTGACGCGC ATTGAGCTGG GTACGGATAT TAGTATACGC
AGCATTGCCA AAGGTCGCGG CAACTACCTG TGGATCGGCA CGGTGAATGG GTTGATCAAA
TATGATCTTG CAAAAGGCAG ATACCGGACG CTGACAAAAG AGAACAGCGG ATTGAGCCAT
AATATAGTTC GAACTATTTT TCAGGATCGA AACGGAATTC TGTGGCTCGG GACTTACGAC
GGGCTTAACC GCCTCGATCC CCAATCGCAA ACCATCACCA GCTTCAATCT GAAACAGGGC
AATGCCGCAT TGAGAAATAA CCTGATCTGC GATATCAAGC CGGTCGATGA TAGCGATTCG
TTGATTTGGG TCGGGACGGA AACGGGCCTT TGCCGGTTCA ATACCGTCAC CGGTTCGCTG
GAAAACCGGG GAGAGCGGAT CAATTTGAGT AATCAGGTTG TGAAAGCCAT TTACACGGAC
AAAAGCCGCA AAGTGTGGCT TGGGACGGAT TTTGGTTTGA ATGTGTATGA TCCGGCGACC
GGTAAAAACG AACGCTATTT TCACAATCCG CAGTCGCCCT ACTCGATATC GAACAATGTG
ATCTGGCAGA TTTTTGAAGA CCGGGCGGGA GTACTCTGGT TTGCCACTTC CAATGGGATC
AGCAAGGTGA ACCAGATGGA TAATTTGTAC CAATATCACG GCGTAACCCA GCAATCGGGC
GCGCAAATAA TTGGTAACCA GGTGAAATCA CTCCTCGTGA GCAGGAGCGG CATTTACTGG
ATCGGCACCT TGCACGGCGT AATCCGCTAC GATCCGCAAA CCGGCCAAAG CCGCAAATTT
GACATTGATT CACCGGAAAA AAGCCGGCTG CTGATCAATA ATGTGGCCAA TTTTCATGAA
GACCGCCACG GGCGGATCTG GATCGGCACG GCGGCGGGCA TTAATGTGTG GGATGAAAGC
AAGCAGCAAA TGCACGCGGT GGCTGCCAGC AAGACCAACG GGCTTGCATC TAATTACATC
AACAATTTTG TAGAAACACC CGACGGAACG CTGCTGGTAG GCGCCTGGGA AGCCGGGATT
TTCCAGGTTA CGAATAGCAC AGAGTCCATT GAAAATCTGC ATTTTAAACT GATCTCAAAG
GCAGAAACCA ACCAATTCCT CTACGGAAGC GGCTTTTTGT GGCTGATCGA GTCCGACGAA
CTTTTTCAGC TCGATCTTCT AAGCTACCAG AAGAAAAAGA TTGCCGCATT CGACCGCGAG
GCGGCCCGAA AAACGGTCAG CAGCTTTTTT ATGGCCAAAA ACGGTACGAT CTGGGCGGCG
ACGCAGCATG GACTAATTGC CTACGATCCG AAAACCGGTA ATGCTGATTT CCATGTGATT
GCCAATTACA GCATTGCCCG CACGGCGATT GCGGAGGATC GGCAAGGTAA TATCTGGACT
GCCACCAATG CAGCACTGGA AAAGTTTAAC CCGACCAGCA AACAGGTTGA ATTTTTTCCG
CTGAATAAAA ACCTGCCGCT GAAAAGCTTT TCTCCCGGCT GCGTGGCGCG CTCGGCCTCG
GGTGAGCTGT TTTTTGGCGG AGACAACGGA TACCTTTCAT TTGCACCGGA AAAGGCCGTC
GCGAACCGTT ACCAGCCGAA GATTTTCCTG ACTAATCTGC TGTTGAATAA CCAGTCCGTC
GGCATCGGCG AAAAGATCAA CGACCGCGTG ATCCTCGACC GGGACATTTC GTTCACGCCG
GCGATCGAGC TCGATTACGG GCAACGTTCC ATCGAACTGC AATTTGCGTC GCTGCATTAC
TGGCTGCCCG AGGTAAATCA TTATTCCTAC AAACTGGAAG GCGAAGACGA GGATTGGAAC
ACGACTTCGG GCGGGAAGAA CTTTGCGGTG TATTCGAATT TGTCGCCCGG AACGTACACT
TTCAAAGTAC GGGGTACCAA CAACAACGGG ATCTGGAGTG ACGAAATAAG CTCAACAAAA
ATCACCGTCA ATCCGCCTTT CTTTCTCAGT ACAAGGTTTC TGATACTTTA TTTCTGCCTG
ATCGTGGCCG GGATTTATAT CGCATTAAAA ATCTATTCGA GCCGCATCAA GCTTGAAAAT
GAATTGAAAA TCAGTAAGTT GGAAATTGCC CATGCCGAGG AAATCGAGCA GACGAAAGAG
CAGTTTTTTA CCAACATTTC CCATGAACTG CGCACGCCGA TCAGCCTCAT TCTGCCGCCC
ATTCATCAGA TTATGAAGAA CGGAAAATTG AATGCTGAGA ATTTCAAGCT CATTTCTCTT
GCCGAAAAGA ACTCGCACAG ACTGCTGCGC GTGGTAAACC AGGTGCTGGA TTTCAAGAAA
ATGCAGAGCG ATACGCTGCA TCTTAACATG ACCAAAGTGG AGATCGTGCG CTTGCTGCAA
GAGCTTTATT CCCATTTTTC CGACAAAGCT GCCCGGCACG AAATCGACTA CACATTTTCC
AGTAGCGTCA CCGAATTTGA AATGATTGCA GATGTTGAAA AGGTGGAAAC GATGGTTTTT
AACCTCCTGT CGAATGCATT TAAATTCACT CCAAACGGCG GTTCGATCAG GCTGGGTATT
GAGGTCCTGA ACGCGTCAAA TGCTTCTGAA ATTGACGTTT TAATACACAT TTCTGACACG
GGAACAGGCA TTTCGGCCGA AGATCAGGCG CGCATTTTCG AGCGGTTTTA TCAGACAGCC
GAATCGCGGA AAATGGAAAT GGGGTCGGGG ATAGGGCTGG CGCTCACGCT TGAATATGTG
AAAATGCACC GTGGGGAAAT CAATCTGGAA AGTACACCCG GGGCAGGAAG TACGTTCACG
ATTTCGCTGC CCAAAGGAAA TGCGGATCAG CTCATGTCGC AGATCGAACC GGATATTTAT
TCCAGGTTCC AGCCTGCACC GCCGACTCCG GATGATGCTG AAACGATATT GTCGGATCAG
GAGAAGCCGC TGCTTTTGAT TGTGGAGGAC AATCCGGATA TGGTCGACTT TATCAGGCTG
AGCCTAAGTG AAAAATACAG GTTTGCCATT GCGGGTGATG GGGCAGAAGG TTTCAGAAAA
GCAGCGGAAC TGGCACCGGA GGTAATCATT TCGGACGTGA TGATGCCCGT GATGGACGGT
CTTACTTTGT GCAGTAAAAT CAAAAGCAAT CCTAAAACCA GCCAGTTTTC CGTCATTCTG
CTCACTGCCC GCAGCCTGGC TTCCCAGAAA ATTGAAGGAA TCCGGATTGG AGCAGACGCT
TACATCACCA AGCCTTTTGA TATTGAATTA CTGGACGCGC AGATCGAAAA TCTCTTGCAG
CGAAAAAGAG AACTGACCGC CTATTTCCGC CACGAGCTGA TCGTAACGCC GACCGCCGAT
GAAGGCAAGG AAAACAAGGA CGACAAGTTT GTCCGTAAAG TGATGAATAT TATCGAGGCG
CATATATCCG ATCCTGATTT CACCGTAGAG ATGTTGGGTT CGGAAATTGG AATGAGCTCC
GCGCATTTGT CCAGAAAGCT CAAATCGCTG ACCCAGTTTT CTGCAAATGA AATCATCAAA
AAATACCGGA TCAAAAAAGC TTCCCTGATG CTTGAAAACA AGGGTGGAAA TATCTCCGAG
GTCATGTATG ATGTTGGCTT TTCGAGTCTT TCCTATTTTT CAAAATGTTT CCGGGAAGAG
TTCGGGGTGA CGCCGAAGGA ATATGCCCGC ACGATAACCA AGGAATAG
|
|---|
| Protein sequence | MGVVIFLFII TCLRALGQEK FFSTISVRDG LPTNLMNAIA QDRNDFIWIA TADGLARYDG
YHFRVFKKGD DAHSIPSNGV QAICPDGEEL WVGTVKGLCK INTITFKVTR IELGTDISIR
SIAKGRGNYL WIGTVNGLIK YDLAKGRYRT LTKENSGLSH NIVRTIFQDR NGILWLGTYD
GLNRLDPQSQ TITSFNLKQG NAALRNNLIC DIKPVDDSDS LIWVGTETGL CRFNTVTGSL
ENRGERINLS NQVVKAIYTD KSRKVWLGTD FGLNVYDPAT GKNERYFHNP QSPYSISNNV
IWQIFEDRAG VLWFATSNGI SKVNQMDNLY QYHGVTQQSG AQIIGNQVKS LLVSRSGIYW
IGTLHGVIRY DPQTGQSRKF DIDSPEKSRL LINNVANFHE DRHGRIWIGT AAGINVWDES
KQQMHAVAAS KTNGLASNYI NNFVETPDGT LLVGAWEAGI FQVTNSTESI ENLHFKLISK
AETNQFLYGS GFLWLIESDE LFQLDLLSYQ KKKIAAFDRE AARKTVSSFF MAKNGTIWAA
TQHGLIAYDP KTGNADFHVI ANYSIARTAI AEDRQGNIWT ATNAALEKFN PTSKQVEFFP
LNKNLPLKSF SPGCVARSAS GELFFGGDNG YLSFAPEKAV ANRYQPKIFL TNLLLNNQSV
GIGEKINDRV ILDRDISFTP AIELDYGQRS IELQFASLHY WLPEVNHYSY KLEGEDEDWN
TTSGGKNFAV YSNLSPGTYT FKVRGTNNNG IWSDEISSTK ITVNPPFFLS TRFLILYFCL
IVAGIYIALK IYSSRIKLEN ELKISKLEIA HAEEIEQTKE QFFTNISHEL RTPISLILPP
IHQIMKNGKL NAENFKLISL AEKNSHRLLR VVNQVLDFKK MQSDTLHLNM TKVEIVRLLQ
ELYSHFSDKA ARHEIDYTFS SSVTEFEMIA DVEKVETMVF NLLSNAFKFT PNGGSIRLGI
EVLNASNASE IDVLIHISDT GTGISAEDQA RIFERFYQTA ESRKMEMGSG IGLALTLEYV
KMHRGEINLE STPGAGSTFT ISLPKGNADQ LMSQIEPDIY SRFQPAPPTP DDAETILSDQ
EKPLLLIVED NPDMVDFIRL SLSEKYRFAI AGDGAEGFRK AAELAPEVII SDVMMPVMDG
LTLCSKIKSN PKTSQFSVIL LTARSLASQK IEGIRIGADA YITKPFDIEL LDAQIENLLQ
RKRELTAYFR HELIVTPTAD EGKENKDDKF VRKVMNIIEA HISDPDFTVE MLGSEIGMSS
AHLSRKLKSL TQFSANEIIK KYRIKKASLM LENKGGNISE VMYDVGFSSL SYFSKCFREE
FGVTPKEYAR TITKE
|
|---|
| |