More than 300 homologs were found in PanDaTox collection
for query gene M446_0591 on replicon NC_010511
Organism: Methylobacterium sp. 4-46



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010511  M446_0591  two component LuxR family transcriptional regulator  100 
 
 
301 aa  587  1e-167  Methylobacterium sp. 4-46  Bacteria  normal  0.477799  hitchhiker  0.00469436 
 
 
-
 
NC_010725  Mpop_3574  two component transcriptional regulator, LuxR family  69.97 
 
 
301 aa  374  1e-102  Methylobacterium populi BJ001  Bacteria  normal  0.0249095  normal 
 
 
-
 
NC_010172  Mext_3383  response regulator receiver  68.21 
 
 
300 aa  359  4e-98  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_3692  two component transcriptional regulator, LuxR family  68.21 
 
 
300 aa  358  5e-98  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.170876  normal 
 
 
-
 
NC_010505  Mrad2831_5514  two component LuxR family transcriptional regulator  69 
 
 
305 aa  350  1e-95  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.211273 
 
 
-
 
NC_010581  Bind_0974  two component LuxR family transcriptional regulator  59.33 
 
 
309 aa  339  4e-92  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.883175  normal  0.426964 
 
 
-
 
NC_011369  Rleg2_3066  two component transcriptional regulator, LuxR family  58.36 
 
 
305 aa  338  8e-92  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_0652  two component LuxR family transcriptional regulator  60.62 
 
 
305 aa  334  9e-91  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.0800453  normal  0.813173 
 
 
-
 
NC_009620  Smed_4179  response regulator receiver protein  55.81 
 
 
309 aa  332  4e-90  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.15819 
 
 
-
 
NC_012850  Rleg_3321  two component transcriptional regulator, LuxR family  56.39 
 
 
305 aa  327  1.0000000000000001e-88  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.536368 
 
 
-
 
NC_007778  RPB_1250  two component LuxR family transcriptional regulator  58.89 
 
 
309 aa  323  2e-87  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.886948  normal 
 
 
-
 
NC_011989  Avi_3499  transcriptional regulator LuxR family  57.91 
 
 
312 aa  323  2e-87  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_3866  response regulator receiver  58.54 
 
 
309 aa  318  6e-86  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.370865  normal 
 
 
-
 
NC_011004  Rpal_1441  two component transcriptional regulator, LuxR family  57.68 
 
 
308 aa  315  8e-85  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_011666  Msil_2002  two component transcriptional regulator, LuxR family  50.16 
 
 
306 aa  290  2e-77  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_007912  Sde_2977  response regulator receiver domain-containing protein  47.7 
 
 
303 aa  289  3e-77  Saccharophagus degradans 2-40  Bacteria  normal  normal  0.13601 
 
 
-
 
NC_009654  Mmwyl1_0962  response regulator receiver protein  51.51 
 
 
304 aa  283  2.0000000000000002e-75  Marinomonas sp. MWYL1  Bacteria  normal  0.512477  normal 
 
 
-
 
NC_008740  Maqu_3869  response regulator receiver protein  50.33 
 
 
301 aa  282  4.0000000000000003e-75  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_007794  Saro_1665  two component LuxR family transcriptional regulator  49.48 
 
 
307 aa  266  2e-70  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  n/a   
 
 
-
 
NC_008825  Mpe_A0671  two component LuxR family transcriptional regulator  50.17 
 
 
333 aa  258  1e-67  Methylibium petroleiphilum PM1  Bacteria  normal  0.0205263  normal 
 
 
-
 
NC_007948  Bpro_0562  two component LuxR family transcriptional regulator  50.35 
 
 
297 aa  254  1.0000000000000001e-66  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_013422  Hneap_1587  two component transcriptional regulator, LuxR family  47.06 
 
 
292 aa  253  3e-66  Halothiobacillus neapolitanus c2  Bacteria  normal  0.522901  n/a   
 
 
-
 
NC_008709  Ping_2984  two component transcriptional regulator, LuxR family protein  44.74 
 
 
295 aa  248  6e-65  Psychromonas ingrahamii 37  Bacteria  normal  0.43543  normal  0.546259 
 
 
-
 
NC_008825  Mpe_A3585  two component LuxR family transcriptional regulator  48.97 
 
 
306 aa  247  1e-64  Methylibium petroleiphilum PM1  Bacteria  normal  0.295986  normal 
 
 
-
 
NC_011138  MADE_00878  two-component response regulator  42.86 
 
 
298 aa  246  3e-64  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_4238  two component transcriptional regulator, LuxR family  44.48 
 
 
356 aa  241  7.999999999999999e-63  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_008781  Pnap_0979  response regulator receiver protein  46.75 
 
 
336 aa  241  1e-62  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_007298  Daro_1445  two component LuxR family transcriptional regulator  50 
 
 
308 aa  241  2e-62  Dechloromonas aromatica RCB  Bacteria  normal  0.446624  normal 
 
 
-
 
NC_012791  Vapar_3147  two component transcriptional regulator, LuxR family  50.17 
 
 
302 aa  239  2.9999999999999997e-62  Variovorax paradoxus S110  Bacteria  normal  0.235206  n/a   
 
 
-
 
NC_007908  Rfer_3397  two component LuxR family transcriptional regulator  46.6 
 
 
328 aa  239  2.9999999999999997e-62  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_007947  Mfla_1761  two component LuxR family transcriptional regulator  47.54 
 
 
311 aa  238  9e-62  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_0218  two component LuxR family transcriptional regulator  44.34 
 
 
339 aa  233  2.0000000000000002e-60  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_007948  Bpro_1354  two component LuxR family transcriptional regulator  45.48 
 
 
349 aa  233  2.0000000000000002e-60  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_010515  Bcenmc03_5666  two component LuxR family transcriptional regulator  42.95 
 
 
312 aa  231  1e-59  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.917296 
 
 
-
 
NC_008061  Bcen_3730  two component LuxR family transcriptional regulator  42.58 
 
 
312 aa  230  2e-59  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008752  Aave_3524  two component LuxR family transcriptional regulator  46.33 
 
 
353 aa  230  2e-59  Acidovorax citrulli AAC00-1  Bacteria  normal  0.406085  normal  0.428998 
 
 
-
 
NC_008543  Bcen2424_4638  two component LuxR family transcriptional regulator  42.58 
 
 
312 aa  230  2e-59  Burkholderia cenocepacia HI2424  Bacteria  normal  normal 
 
 
-
 
NC_008786  Veis_1731  response regulator receiver protein  43.73 
 
 
361 aa  224  1e-57  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.319975 
 
 
-
 
NC_010524  Lcho_1083  two component LuxR family transcriptional regulator  43.99 
 
 
316 aa  221  9.999999999999999e-57  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_007952  Bxe_B1713  two component LuxR family transcriptional regulator  39.09 
 
 
361 aa  213  2.9999999999999995e-54  Burkholderia xenovorans LB400  Bacteria  normal  0.310925  normal 
 
 
-
 
NC_004578  PSPTO_4080  DNA-binding response regulator, LuxR family  51.97 
 
 
222 aa  150  4e-35  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.542388  n/a   
 
 
-
 
NC_011884  Cyan7425_3210  response regulator receiver modulated diguanylate cyclase  55.17 
 
 
337 aa  137  2e-31  Cyanothece sp. PCC 7425  Bacteria  normal  0.32327  normal  0.712325 
 
 
-
 
NC_007413  Ava_2149  response regulator receiver Signal transduction histidine kinase  47.14 
 
 
407 aa  134  1.9999999999999998e-30  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.142048 
 
 
-
 
NC_013440  Hoch_6548  response regulator receiver sensor signal transduction histidine kinase  50.41 
 
 
397 aa  133  3e-30  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.543575 
 
 
-
 
NC_007413  Ava_2562  response regulator receiver Signal transduction histidine kinase  50.86 
 
 
437 aa  132  1.0000000000000001e-29  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_010814  Glov_1118  response regulator receiver sensor signal transduction histidine kinase  49.64 
 
 
452 aa  130  4.0000000000000003e-29  Geobacter lovleyi SZ  Bacteria  hitchhiker  0.000972917  n/a   
 
 
-
 
NC_014248  Aazo_4465  response regulator receiver sensor signal transduction histidine kinase  50.86 
 
 
437 aa  129  7.000000000000001e-29  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_010571  Oter_0809  response regulator receiver sensor signal transduction histidine kinase  51.69 
 
 
367 aa  129  8.000000000000001e-29  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
NC_013440  Hoch_2175  response regulator receiver sensor signal transduction histidine kinase  51.28 
 
 
395 aa  129  8.000000000000001e-29  Haliangium ochraceum DSM 14365  Bacteria  normal  0.924768  normal  0.400775 
 
 
-
 
NC_013730  Slin_2507  two component, sigma54 specific, transcriptional regulator, Fis family  50 
 
 
488 aa  128  1.0000000000000001e-28  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.182398 
 
 
-
 
NC_007413  Ava_4136  response regulator receiver Signal transduction histidine kinase  50 
 
 
440 aa  126  4.0000000000000003e-28  Anabaena variabilis ATCC 29413  Bacteria  decreased coverage  0.00000660181  hitchhiker  0.00876613 
 
 
-
 
NC_010571  Oter_1720  two component LuxR family transcriptional regulator  53.45 
 
 
301 aa  126  5e-28  Opitutus terrae PB90-1  Bacteria  normal  0.162572  normal  0.616267 
 
 
-
 
NC_011884  Cyan7425_0790  multi-sensor signal transduction histidine kinase  50 
 
 
566 aa  125  6e-28  Cyanothece sp. PCC 7425  Bacteria  normal  0.391268  normal 
 
 
-
 
NC_010676  Bphyt_6236  multi-sensor signal transduction histidine kinase  51.67 
 
 
553 aa  125  1e-27  Burkholderia phytofirmans PsJN  Bacteria  normal  normal  0.914679 
 
 
-
 
NC_010625  Bphy_6559  multi-sensor signal transduction histidine kinase  52.99 
 
 
541 aa  123  5e-27  Burkholderia phymatum STM815  Bacteria  normal  normal  0.59439 
 
 
-
 
NC_012918  GM21_3242  response regulator receiver sensor signal transduction histidine kinase  48.28 
 
 
441 aa  122  9e-27  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_010627  Bphy_7700  multi-sensor signal transduction histidine kinase  51.69 
 
 
541 aa  121  9.999999999999999e-27  Burkholderia phymatum STM815  Bacteria  normal  0.163324  normal  0.507763 
 
 
-
 
NC_009012  Cthe_1826  response regulator receiver sensor signal transduction histidine kinase  42.54 
 
 
363 aa  122  9.999999999999999e-27  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_1018  response regulator receiver sensor signal transduction histidine kinase  48.28 
 
 
441 aa  121  1.9999999999999998e-26  Geobacter bemidjiensis Bem  Bacteria  hitchhiker  0.00729938  n/a   
 
 
-
 
NC_009767  Rcas_3134  response regulator receiver protein  42.04 
 
 
200 aa  120  3e-26  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_010571  Oter_3856  response regulator receiver sensor signal transduction histidine kinase  42.55 
 
 
378 aa  120  3e-26  Opitutus terrae PB90-1  Bacteria  normal  normal  0.215089 
 
 
-
 
NC_010551  BamMC406_1236  response regulator receiver sensor signal transduction histidine kinase  42.96 
 
 
386 aa  119  7e-26  Burkholderia ambifaria MC40-6  Bacteria  normal  0.493129  normal 
 
 
-
 
NC_013216  Dtox_1577  response regulator receiver modulated diguanylate cyclase  41.27 
 
 
314 aa  119  7.999999999999999e-26  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_008312  Tery_4155  response regulator receiver sensor signal transduction histidine kinase  47.46 
 
 
440 aa  118  9.999999999999999e-26  Trichodesmium erythraeum IMS101  Bacteria  normal  0.50715  normal 
 
 
-
 
NC_008709  Ping_0978  response regulator receiver modulated diguanylate cyclase  41.96 
 
 
322 aa  118  9.999999999999999e-26  Psychromonas ingrahamii 37  Bacteria  normal  0.97362  decreased coverage  0.00116316 
 
 
-
 
NC_007796  Mhun_1941  response regulator receiver domain-containing protein  47.01 
 
 
156 aa  118  1.9999999999999998e-25  Methanospirillum hungatei JF-1  Archaea  normal  normal 
 
 
-
 
NC_011138  MADE_03429  two-component system response regulator (hybrid family) protein  46.51 
 
 
358 aa  117  1.9999999999999998e-25  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_010571  Oter_0959  response regulator receiver sensor signal transduction histidine kinase  47.01 
 
 
372 aa  117  3e-25  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
NC_010623  Bphy_4530  response regulator receiver sensor signal transduction histidine kinase  42.96 
 
 
386 aa  117  3e-25  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_1192  response regulator receiver modulated diguanylate cyclase  40.99 
 
 
316 aa  116  3.9999999999999997e-25  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_013512  Sdel_0912  metal-dependent phosphohydrolase HD sub domain protein  46.62 
 
 
371 aa  115  6e-25  Sulfurospirillum deleyianum DSM 6946  Bacteria  normal  n/a   
 
 
-
 
NC_012560  Avin_29300  Response regulator  48.78 
 
 
310 aa  115  8.999999999999998e-25  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_011992  Dtpsy_0962  response regulator receiver modulated metal dependent phosphohydrolase  49.15 
 
 
377 aa  115  8.999999999999998e-25  Acidovorax ebreus TPSY  Bacteria  normal  0.115091  n/a   
 
 
-
 
NC_008782  Ajs_1044  response regulator receiver modulated metal dependent phosphohydrolase  49.15 
 
 
377 aa  115  1.0000000000000001e-24  Acidovorax sp. JS42  Bacteria  normal  normal  0.0516082 
 
 
-
 
NC_007298  Daro_0007  response regulator receiver modulated metal dependent phosphohydrolase  51.69 
 
 
379 aa  114  2.0000000000000002e-24  Dechloromonas aromatica RCB  Bacteria  normal  0.829613  normal  0.0284762 
 
 
-
 
NC_011831  Cagg_1006  response regulator receiver modulated diguanylate cyclase  43.06 
 
 
312 aa  114  2.0000000000000002e-24  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_011726  PCC8801_1350  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  33.17 
 
 
715 aa  114  2.0000000000000002e-24  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_008321  Shewmr4_0716  response regulator receiver modulated metal dependent phosphohydrolase  48.72 
 
 
338 aa  114  2.0000000000000002e-24  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_3306  response regulator receiver modulated metal dependent phosphohydrolase  48.72 
 
 
338 aa  114  2.0000000000000002e-24  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_008340  Mlg_2429  response regulator receiver modulated metal dependent phosphohydrolase  48.8 
 
 
480 aa  114  2.0000000000000002e-24  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal  0.129673 
 
 
-
 
NC_013161  Cyan8802_1380  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  33.17 
 
 
715 aa  114  2.0000000000000002e-24  Cyanothece sp. PCC 8802  Bacteria  normal  0.923401  normal 
 
 
-
 
NC_008577  Shewana3_3418  response regulator receiver modulated metal dependent phosphohydrolase  48.72 
 
 
338 aa  114  2.0000000000000002e-24  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_011146  Gbem_1228  response regulator receiver modulated diguanylate cyclase  44 
 
 
349 aa  113  3e-24  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_011726  PCC8801_1139  response regulator receiver modulated diguanylate cyclase  29.29 
 
 
308 aa  113  4.0000000000000004e-24  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013161  Cyan8802_1169  response regulator receiver modulated diguanylate cyclase  29.29 
 
 
308 aa  113  4.0000000000000004e-24  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_009901  Spea_0629  response regulator receiver modulated metal dependent phosphohydrolase  46.15 
 
 
339 aa  113  4.0000000000000004e-24  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_2347  response regulator receiver protein  47.9 
 
 
202 aa  113  5e-24  Roseiflexus sp. RS-1  Bacteria  normal  0.56815  normal 
 
 
-
 
NC_009972  Haur_2343  two component transcriptional regulator  37.43 
 
 
243 aa  112  6e-24  Herpetosiphon aurantiacus ATCC 23779  Bacteria  hitchhiker  0.00929975  n/a   
 
 
-
 
NC_009438  Sputcn32_3141  response regulator receiver modulated metal dependent phosphohydrolase  47.86 
 
 
338 aa  112  6e-24  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_011729  PCC7424_0984  response regulator receiver modulated diguanylate cyclase  44.83 
 
 
353 aa  112  6e-24  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.194443 
 
 
-
 
NC_008576  Mmc1_2393  response regulator receiver sensor hybrid histidine kinase  51.67 
 
 
518 aa  112  7.000000000000001e-24  Magnetococcus sp. MC-1  Bacteria  normal  0.991201  normal  0.0787545 
 
 
-
 
NC_007413  Ava_2150  response regulator receiver Signal transduction histidine kinase  46.55 
 
 
443 aa  111  1.0000000000000001e-23  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.394463 
 
 
-
 
NC_007908  Rfer_2262  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  40 
 
 
853 aa  112  1.0000000000000001e-23  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_010557  BamMC406_6071  two component AraC family transcriptional regulator  45 
 
 
271 aa  111  1.0000000000000001e-23  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_009092  Shew_3199  response regulator receiver modulated metal dependent phosphohydrolase  45.3 
 
 
339 aa  111  1.0000000000000001e-23  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_008700  Sama_2951  response regulator receiver protein  47.01 
 
 
340 aa  112  1.0000000000000001e-23  Shewanella amazonensis SB2B  Bacteria  normal  normal  0.129077 
 
 
-
 
NC_009997  Sbal195_0871  response regulator receiver modulated metal dependent phosphohydrolase  46.15 
 
 
338 aa  111  2.0000000000000002e-23  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_011663  Sbal223_0859  response regulator receiver modulated metal dependent phosphohydrolase  46.15 
 
 
338 aa  111  2.0000000000000002e-23  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_009052  Sbal_3504  response regulator receiver modulated metal dependent phosphohydrolase  46.15 
 
 
338 aa  111  2.0000000000000002e-23  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_008392  Bamb_6368  two component AraC family transcriptional regulator  45 
 
 
271 aa  110  2.0000000000000002e-23  Burkholderia ambifaria AMMD  Bacteria  normal  0.434467  normal 
 
 
-
 
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