More than 300 homologs were found in PanDaTox collection
for query gene Bphyt_2397 on replicon NC_010681
Organism: Burkholderia phytofirmans PsJN



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010681  Bphyt_2397  two component transcriptional regulator, AraC family  100 
 
 
269 aa  538  9.999999999999999e-153  Burkholderia phytofirmans PsJN  Bacteria  normal  0.92999  normal  0.351016 
 
 
-
 
NC_008392  Bamb_6368  two component AraC family transcriptional regulator  72.52 
 
 
271 aa  365  1e-100  Burkholderia ambifaria AMMD  Bacteria  normal  0.434467  normal 
 
 
-
 
NC_010557  BamMC406_6071  two component AraC family transcriptional regulator  72.52 
 
 
271 aa  364  1e-100  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_010512  Bcenmc03_6350  two component AraC family transcriptional regulator  73.12 
 
 
271 aa  363  1e-99  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.787195  normal  0.900493 
 
 
-
 
NC_008062  Bcen_6528  two component AraC family transcriptional regulator  73.52 
 
 
271 aa  362  3e-99  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.485144  n/a   
 
 
-
 
NC_008544  Bcen2424_6762  two component AraC family transcriptional regulator  73.52 
 
 
271 aa  362  3e-99  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.295507 
 
 
-
 
NC_007509  Bcep18194_C7173  two component AraC family transcriptional regulator  72.22 
 
 
268 aa  360  9e-99  Burkholderia sp. 383  Bacteria  normal  normal  0.495812 
 
 
-
 
NC_007509  Bcep18194_C7377  two component AraC family transcriptional regulator  62.86 
 
 
278 aa  302  5.000000000000001e-81  Burkholderia sp. 383  Bacteria  normal  0.0377301  normal  0.284562 
 
 
-
 
NC_010512  Bcenmc03_6477  two component AraC family transcriptional regulator  60.31 
 
 
277 aa  297  1e-79  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.0923467 
 
 
-
 
NC_008544  Bcen2424_5986  two component AraC family transcriptional regulator  60.31 
 
 
277 aa  297  1e-79  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.0117191 
 
 
-
 
NC_010557  BamMC406_5929  two component AraC family transcriptional regulator  61.63 
 
 
277 aa  295  4e-79  Burkholderia ambifaria MC40-6  Bacteria  normal  0.473719  normal 
 
 
-
 
NC_008392  Bamb_6198  two component AraC family transcriptional regulator  61.22 
 
 
277 aa  295  4e-79  Burkholderia ambifaria AMMD  Bacteria  normal  normal 
 
 
-
 
NC_008062  Bcen_5621  two component AraC family transcriptional regulator  59.92 
 
 
277 aa  295  5e-79  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.289619  n/a   
 
 
-
 
NC_012560  Avin_41160  Response regulator  51.45 
 
 
261 aa  239  4e-62  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_4605  two component transcriptional regulator, AraC family  50 
 
 
271 aa  234  1.0000000000000001e-60  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_4604  two component transcriptional regulator, AraC family  43.82 
 
 
281 aa  194  9e-49  Variovorax paradoxus S110  Bacteria  normal  0.514268  n/a   
 
 
-
 
NC_013132  Cpin_6369  histidine kinase  33.6 
 
 
1366 aa  133  3.9999999999999996e-30  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_2149  response regulator receiver Signal transduction histidine kinase  45.52 
 
 
407 aa  129  4.0000000000000003e-29  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.142048 
 
 
-
 
NC_007413  Ava_2562  response regulator receiver Signal transduction histidine kinase  44.27 
 
 
437 aa  129  7.000000000000001e-29  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_007952  Bxe_B1713  two component LuxR family transcriptional regulator  46.21 
 
 
361 aa  128  1.0000000000000001e-28  Burkholderia xenovorans LB400  Bacteria  normal  0.310925  normal 
 
 
-
 
NC_014248  Aazo_4465  response regulator receiver sensor signal transduction histidine kinase  44.03 
 
 
437 aa  125  6e-28  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_0962  response regulator receiver protein  50 
 
 
304 aa  124  1e-27  Marinomonas sp. MWYL1  Bacteria  normal  0.512477  normal 
 
 
-
 
NC_013061  Phep_1317  ATP-binding region ATPase domain protein  31.35 
 
 
1370 aa  124  2e-27  Pedobacter heparinus DSM 2366  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_0652  two component LuxR family transcriptional regulator  48.85 
 
 
305 aa  123  3e-27  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.0800453  normal  0.813173 
 
 
-
 
NC_011004  Rpal_1441  two component transcriptional regulator, LuxR family  35.37 
 
 
308 aa  121  9.999999999999999e-27  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_013730  Slin_0550  histidine kinase  34.3 
 
 
1388 aa  120  1.9999999999999998e-26  Spirosoma linguale DSM 74  Bacteria  normal  0.23656  normal  0.89256 
 
 
-
 
NC_013730  Slin_6436  histidine kinase  29.72 
 
 
1418 aa  120  1.9999999999999998e-26  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_3866  response regulator receiver  38.58 
 
 
309 aa  121  1.9999999999999998e-26  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.370865  normal 
 
 
-
 
NC_008228  Patl_1836  two component AraC family transcriptional regulator  31.6 
 
 
1341 aa  121  1.9999999999999998e-26  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_013730  Slin_3199  two component transcriptional regulator, AraC family  34.27 
 
 
940 aa  120  3e-26  Spirosoma linguale DSM 74  Bacteria  normal  0.157032  normal  0.236848 
 
 
-
 
NC_010625  Bphy_6559  multi-sensor signal transduction histidine kinase  48.78 
 
 
541 aa  120  3e-26  Burkholderia phymatum STM815  Bacteria  normal  normal  0.59439 
 
 
-
 
NC_013730  Slin_2507  two component, sigma54 specific, transcriptional regulator, Fis family  40.43 
 
 
488 aa  120  3e-26  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.182398 
 
 
-
 
NC_010581  Bind_0974  two component LuxR family transcriptional regulator  48.33 
 
 
309 aa  120  3e-26  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.883175  normal  0.426964 
 
 
-
 
NC_011884  Cyan7425_3210  response regulator receiver modulated diguanylate cyclase  33.33 
 
 
337 aa  119  4.9999999999999996e-26  Cyanothece sp. PCC 7425  Bacteria  normal  0.32327  normal  0.712325 
 
 
-
 
NC_011884  Cyan7425_0790  multi-sensor signal transduction histidine kinase  47.41 
 
 
566 aa  119  4.9999999999999996e-26  Cyanothece sp. PCC 7425  Bacteria  normal  0.391268  normal 
 
 
-
 
NC_013440  Hoch_6548  response regulator receiver sensor signal transduction histidine kinase  47.24 
 
 
397 aa  119  6e-26  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.543575 
 
 
-
 
NC_010627  Bphy_7700  multi-sensor signal transduction histidine kinase  49.19 
 
 
541 aa  119  7e-26  Burkholderia phymatum STM815  Bacteria  normal  0.163324  normal  0.507763 
 
 
-
 
NC_007778  RPB_1250  two component LuxR family transcriptional regulator  34.14 
 
 
309 aa  119  7.999999999999999e-26  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.886948  normal 
 
 
-
 
NC_013061  Phep_2832  ATP-binding region ATPase domain protein  32.38 
 
 
1340 aa  118  9.999999999999999e-26  Pedobacter heparinus DSM 2366  Bacteria  normal  0.0201204  hitchhiker  0.008817 
 
 
-
 
NC_009767  Rcas_3134  response regulator receiver protein  46.88 
 
 
200 aa  118  9.999999999999999e-26  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_3574  two component transcriptional regulator, LuxR family  48.72 
 
 
301 aa  118  9.999999999999999e-26  Methylobacterium populi BJ001  Bacteria  normal  0.0249095  normal 
 
 
-
 
NC_011726  PCC8801_1350  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  45.16 
 
 
715 aa  117  1.9999999999999998e-25  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_007413  Ava_4136  response regulator receiver Signal transduction histidine kinase  49.15 
 
 
440 aa  117  1.9999999999999998e-25  Anabaena variabilis ATCC 29413  Bacteria  decreased coverage  0.00000660181  hitchhiker  0.00876613 
 
 
-
 
NC_013161  Cyan8802_3359  response regulator receiver sensor signal transduction histidine kinase  31.19 
 
 
395 aa  117  1.9999999999999998e-25  Cyanothece sp. PCC 8802  Bacteria  normal  0.361398  normal 
 
 
-
 
NC_011726  PCC8801_0820  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  42.64 
 
 
593 aa  117  1.9999999999999998e-25  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013161  Cyan8802_1380  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  45.16 
 
 
715 aa  117  1.9999999999999998e-25  Cyanothece sp. PCC 8802  Bacteria  normal  0.923401  normal 
 
 
-
 
NC_011989  Avi_3499  transcriptional regulator LuxR family  46.4 
 
 
312 aa  117  1.9999999999999998e-25  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_013161  Cyan8802_0849  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  42.64 
 
 
593 aa  117  1.9999999999999998e-25  Cyanothece sp. PCC 8802  Bacteria  normal  0.386146  normal 
 
 
-
 
NC_008740  Maqu_3869  response regulator receiver protein  46.4 
 
 
301 aa  117  1.9999999999999998e-25  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_011726  PCC8801_2743  response regulator receiver sensor signal transduction histidine kinase  31.19 
 
 
395 aa  117  1.9999999999999998e-25  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013037  Dfer_0812  histidine kinase  29.44 
 
 
1335 aa  116  3.9999999999999997e-25  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.127825  normal 
 
 
-
 
NC_014248  Aazo_3807  AraC family two component transcriptional regulator  28.84 
 
 
289 aa  116  5e-25  'Nostoc azollae' 0708  Bacteria  normal  0.536318  n/a   
 
 
-
 
NC_007912  Sde_2977  response regulator receiver domain-containing protein  40.94 
 
 
303 aa  115  6e-25  Saccharophagus degradans 2-40  Bacteria  normal  normal  0.13601 
 
 
-
 
NC_010505  Mrad2831_5514  two component LuxR family transcriptional regulator  46.55 
 
 
305 aa  115  8.999999999999998e-25  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.211273 
 
 
-
 
NC_011729  PCC7424_2188  response regulator receiver sensor signal transduction histidine kinase  38.93 
 
 
384 aa  114  1.0000000000000001e-24  Cyanothece sp. PCC 7424  Bacteria  n/a    hitchhiker  0.00677544 
 
 
-
 
NC_010676  Bphyt_6236  multi-sensor signal transduction histidine kinase  47.01 
 
 
553 aa  115  1.0000000000000001e-24  Burkholderia phytofirmans PsJN  Bacteria  normal  normal  0.914679 
 
 
-
 
NC_012791  Vapar_4238  two component transcriptional regulator, LuxR family  46.09 
 
 
356 aa  114  1.0000000000000001e-24  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_013730  Slin_4321  histidine kinase  30.83 
 
 
1355 aa  114  2.0000000000000002e-24  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.295286 
 
 
-
 
NC_013730  Slin_1735  histidine kinase  30.28 
 
 
1343 aa  114  2.0000000000000002e-24  Spirosoma linguale DSM 74  Bacteria  normal  0.260049  normal 
 
 
-
 
NC_004578  PSPTO_4080  DNA-binding response regulator, LuxR family  42.76 
 
 
222 aa  113  3e-24  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.542388  n/a   
 
 
-
 
NC_008825  Mpe_A3585  two component LuxR family transcriptional regulator  43.28 
 
 
306 aa  113  3e-24  Methylibium petroleiphilum PM1  Bacteria  normal  0.295986  normal 
 
 
-
 
NC_011729  PCC7424_2267  two component transcriptional regulator, AraC family  29.96 
 
 
265 aa  113  3e-24  Cyanothece sp. PCC 7424  Bacteria  n/a    hitchhiker  0.00808217 
 
 
-
 
NC_013132  Cpin_5544  histidine kinase  31.62 
 
 
1306 aa  113  4.0000000000000004e-24  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.122286  normal 
 
 
-
 
NC_008781  Pnap_0979  response regulator receiver protein  46.88 
 
 
336 aa  113  4.0000000000000004e-24  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_011831  Cagg_1006  response regulator receiver modulated diguanylate cyclase  48.72 
 
 
312 aa  112  5e-24  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_011666  Msil_2002  two component transcriptional regulator, LuxR family  45 
 
 
306 aa  112  6e-24  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_010571  Oter_0809  response regulator receiver sensor signal transduction histidine kinase  45.69 
 
 
367 aa  112  7.000000000000001e-24  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
NC_013061  Phep_2824  ATP-binding region ATPase domain protein  29.55 
 
 
1374 aa  112  8.000000000000001e-24  Pedobacter heparinus DSM 2366  Bacteria  normal  normal 
 
 
-
 
NC_010515  Bcenmc03_5666  two component LuxR family transcriptional regulator  38.93 
 
 
312 aa  112  9e-24  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.917296 
 
 
-
 
NC_007413  Ava_4889  two component AraC family transcriptional regulator  28.46 
 
 
288 aa  111  1.0000000000000001e-23  Anabaena variabilis ATCC 29413  Bacteria  normal  0.298891  hitchhiker  0.00503781 
 
 
-
 
NC_008061  Bcen_3730  two component LuxR family transcriptional regulator  38.93 
 
 
312 aa  111  1.0000000000000001e-23  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008543  Bcen2424_4638  two component LuxR family transcriptional regulator  38.93 
 
 
312 aa  111  1.0000000000000001e-23  Burkholderia cenocepacia HI2424  Bacteria  normal  normal 
 
 
-
 
NC_013173  Dbac_2998  response regulator receiver protein  47.5 
 
 
377 aa  111  1.0000000000000001e-23  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_013422  Hneap_1587  two component transcriptional regulator, LuxR family  45.83 
 
 
292 aa  111  1.0000000000000001e-23  Halothiobacillus neapolitanus c2  Bacteria  normal  0.522901  n/a   
 
 
-
 
NC_007413  Ava_2150  response regulator receiver Signal transduction histidine kinase  41.22 
 
 
443 aa  110  2.0000000000000002e-23  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.394463 
 
 
-
 
NC_007908  Rfer_3397  two component LuxR family transcriptional regulator  46.15 
 
 
328 aa  111  2.0000000000000002e-23  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_011757  Mchl_3692  two component transcriptional regulator, LuxR family  45.69 
 
 
300 aa  110  3e-23  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.170876  normal 
 
 
-
 
NC_010511  M446_0591  two component LuxR family transcriptional regulator  44 
 
 
301 aa  110  3e-23  Methylobacterium sp. 4-46  Bacteria  normal  0.477799  hitchhiker  0.00469436 
 
 
-
 
NC_010623  Bphy_4530  response regulator receiver sensor signal transduction histidine kinase  44.83 
 
 
386 aa  110  3e-23  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_3383  response regulator receiver  45.69 
 
 
300 aa  110  3e-23  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_6047  response regulator receiver sensor hybrid histidine kinase  31.15 
 
 
677 aa  109  4.0000000000000004e-23  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_009523  RoseRS_2347  response regulator receiver protein  48.28 
 
 
202 aa  109  5e-23  Roseiflexus sp. RS-1  Bacteria  normal  0.56815  normal 
 
 
-
 
NC_013037  Dfer_1604  two component transcriptional regulator, AraC family  32.79 
 
 
904 aa  109  5e-23  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal 
 
 
-
 
NC_007520  Tcr_2179  response regulator receiver (CheY-like) modulated metal dependent phosphohydrolase  42.74 
 
 
348 aa  109  6e-23  Thiomicrospira crunogena XCL-2  Bacteria  normal  0.378064  n/a   
 
 
-
 
NC_013037  Dfer_0792  histidine kinase  27.99 
 
 
1378 aa  109  6e-23  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.134077 
 
 
-
 
NC_011369  Rleg2_3066  two component transcriptional regulator, LuxR family  44.8 
 
 
305 aa  108  7.000000000000001e-23  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_014248  Aazo_4229  response regulator receiver sensor signal transduction histidine kinase  40.98 
 
 
383 aa  108  7.000000000000001e-23  'Nostoc azollae' 0708  Bacteria  normal  0.599633  n/a   
 
 
-
 
NC_010551  BamMC406_1236  response regulator receiver sensor signal transduction histidine kinase  43.97 
 
 
386 aa  108  8.000000000000001e-23  Burkholderia ambifaria MC40-6  Bacteria  normal  0.493129  normal 
 
 
-
 
NC_009012  Cthe_1826  response regulator receiver sensor signal transduction histidine kinase  43.97 
 
 
363 aa  108  8.000000000000001e-23  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_007948  Bpro_1354  two component LuxR family transcriptional regulator  45.31 
 
 
349 aa  108  8.000000000000001e-23  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_008825  Mpe_A0671  two component LuxR family transcriptional regulator  43.45 
 
 
333 aa  108  8.000000000000001e-23  Methylibium petroleiphilum PM1  Bacteria  normal  0.0205263  normal 
 
 
-
 
NC_008009  Acid345_4060  response regulator receiver modulated metal dependent phosphohydrolase  47.01 
 
 
365 aa  108  9.000000000000001e-23  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal  0.0748941 
 
 
-
 
NC_011729  PCC7424_0984  response regulator receiver modulated diguanylate cyclase  31.44 
 
 
353 aa  108  9.000000000000001e-23  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.194443 
 
 
-
 
NC_014248  Aazo_5066  response regulator receiver modulated diguanylate cyclase  44.35 
 
 
338 aa  108  1e-22  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_013730  Slin_2107  two component transcriptional regulator, AraC family  29.2 
 
 
1349 aa  108  1e-22  Spirosoma linguale DSM 74  Bacteria  decreased coverage  0.000288147  normal  0.419692 
 
 
-
 
NC_009654  Mmwyl1_0356  response regulator receiver modulated metal dependent phosphohydrolase  42.31 
 
 
360 aa  107  2e-22  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_007948  Bpro_0562  two component LuxR family transcriptional regulator  41.04 
 
 
297 aa  107  2e-22  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_013440  Hoch_2175  response regulator receiver sensor signal transduction histidine kinase  43.33 
 
 
395 aa  107  2e-22  Haliangium ochraceum DSM 14365  Bacteria  normal  0.924768  normal  0.400775 
 
 
-
 
NC_008752  Aave_3524  two component LuxR family transcriptional regulator  43.62 
 
 
353 aa  107  2e-22  Acidovorax citrulli AAC00-1  Bacteria  normal  0.406085  normal  0.428998 
 
 
-
 
NC_011884  Cyan7425_2947  multi-sensor signal transduction histidine kinase  41.38 
 
 
503 aa  107  3e-22  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
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