More than 300 homologs were found in PanDaTox collection
for query gene Bpro_0562 on replicon NC_007948
Organism: Polaromonas sp. JS666



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007948  Bpro_0562  two component LuxR family transcriptional regulator  100 
 
 
297 aa  597  1e-169  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_012791  Vapar_3147  two component transcriptional regulator, LuxR family  73.99 
 
 
302 aa  398  9.999999999999999e-111  Variovorax paradoxus S110  Bacteria  normal  0.235206  n/a   
 
 
-
 
NC_008825  Mpe_A3585  two component LuxR family transcriptional regulator  71.48 
 
 
306 aa  394  1e-108  Methylibium petroleiphilum PM1  Bacteria  normal  0.295986  normal 
 
 
-
 
NC_010002  Daci_0218  two component LuxR family transcriptional regulator  59.94 
 
 
339 aa  344  8.999999999999999e-94  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_0652  two component LuxR family transcriptional regulator  47.26 
 
 
305 aa  259  4e-68  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.0800453  normal  0.813173 
 
 
-
 
NC_007778  RPB_1250  two component LuxR family transcriptional regulator  48.3 
 
 
309 aa  259  5.0000000000000005e-68  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.886948  normal 
 
 
-
 
NC_010511  M446_0591  two component LuxR family transcriptional regulator  49.66 
 
 
301 aa  255  5e-67  Methylobacterium sp. 4-46  Bacteria  normal  0.477799  hitchhiker  0.00469436 
 
 
-
 
NC_007958  RPD_3866  response regulator receiver  47.62 
 
 
309 aa  255  8e-67  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.370865  normal 
 
 
-
 
NC_011004  Rpal_1441  two component transcriptional regulator, LuxR family  48.28 
 
 
308 aa  251  7e-66  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_1083  two component LuxR family transcriptional regulator  46.77 
 
 
316 aa  248  1e-64  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_010581  Bind_0974  two component LuxR family transcriptional regulator  45.97 
 
 
309 aa  246  3e-64  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.883175  normal  0.426964 
 
 
-
 
NC_008825  Mpe_A0671  two component LuxR family transcriptional regulator  46.2 
 
 
333 aa  246  4.9999999999999997e-64  Methylibium petroleiphilum PM1  Bacteria  normal  0.0205263  normal 
 
 
-
 
NC_011369  Rleg2_3066  two component transcriptional regulator, LuxR family  46.58 
 
 
305 aa  245  6.999999999999999e-64  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_009620  Smed_4179  response regulator receiver protein  44.93 
 
 
309 aa  244  9.999999999999999e-64  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.15819 
 
 
-
 
NC_012850  Rleg_3321  two component transcriptional regulator, LuxR family  45.21 
 
 
305 aa  239  5e-62  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.536368 
 
 
-
 
NC_008740  Maqu_3869  response regulator receiver protein  45.33 
 
 
301 aa  238  1e-61  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_007947  Mfla_1761  two component LuxR family transcriptional regulator  45.94 
 
 
311 aa  236  3e-61  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_007298  Daro_1445  two component LuxR family transcriptional regulator  47.3 
 
 
308 aa  236  4e-61  Dechloromonas aromatica RCB  Bacteria  normal  0.446624  normal 
 
 
-
 
NC_007912  Sde_2977  response regulator receiver domain-containing protein  42.56 
 
 
303 aa  235  6e-61  Saccharophagus degradans 2-40  Bacteria  normal  normal  0.13601 
 
 
-
 
NC_011666  Msil_2002  two component transcriptional regulator, LuxR family  45.21 
 
 
306 aa  234  1.0000000000000001e-60  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_013422  Hneap_1587  two component transcriptional regulator, LuxR family  45.99 
 
 
292 aa  233  2.0000000000000002e-60  Halothiobacillus neapolitanus c2  Bacteria  normal  0.522901  n/a   
 
 
-
 
NC_010725  Mpop_3574  two component transcriptional regulator, LuxR family  47.81 
 
 
301 aa  233  2.0000000000000002e-60  Methylobacterium populi BJ001  Bacteria  normal  0.0249095  normal 
 
 
-
 
NC_010172  Mext_3383  response regulator receiver  47.32 
 
 
300 aa  233  3e-60  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_011989  Avi_3499  transcriptional regulator LuxR family  43.96 
 
 
312 aa  233  3e-60  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_011757  Mchl_3692  two component transcriptional regulator, LuxR family  47.32 
 
 
300 aa  233  4.0000000000000004e-60  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.170876  normal 
 
 
-
 
NC_007952  Bxe_B1713  two component LuxR family transcriptional regulator  41.19 
 
 
361 aa  231  1e-59  Burkholderia xenovorans LB400  Bacteria  normal  0.310925  normal 
 
 
-
 
NC_010505  Mrad2831_5514  two component LuxR family transcriptional regulator  47.18 
 
 
305 aa  231  2e-59  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.211273 
 
 
-
 
NC_007908  Rfer_3397  two component LuxR family transcriptional regulator  43.51 
 
 
328 aa  225  7e-58  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_0962  response regulator receiver protein  42.52 
 
 
304 aa  219  3e-56  Marinomonas sp. MWYL1  Bacteria  normal  0.512477  normal 
 
 
-
 
NC_008752  Aave_3524  two component LuxR family transcriptional regulator  42.77 
 
 
353 aa  218  7.999999999999999e-56  Acidovorax citrulli AAC00-1  Bacteria  normal  0.406085  normal  0.428998 
 
 
-
 
NC_008781  Pnap_0979  response regulator receiver protein  41.25 
 
 
336 aa  216  4e-55  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_007948  Bpro_1354  two component LuxR family transcriptional regulator  40.94 
 
 
349 aa  213  1.9999999999999998e-54  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_010515  Bcenmc03_5666  two component LuxR family transcriptional regulator  40.8 
 
 
312 aa  209  4e-53  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.917296 
 
 
-
 
NC_008061  Bcen_3730  two component LuxR family transcriptional regulator  40.8 
 
 
312 aa  209  6e-53  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008543  Bcen2424_4638  two component LuxR family transcriptional regulator  40.8 
 
 
312 aa  209  6e-53  Burkholderia cenocepacia HI2424  Bacteria  normal  normal 
 
 
-
 
NC_008786  Veis_1731  response regulator receiver protein  41.41 
 
 
361 aa  208  7e-53  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.319975 
 
 
-
 
NC_008709  Ping_2984  two component transcriptional regulator, LuxR family protein  43.64 
 
 
295 aa  207  1e-52  Psychromonas ingrahamii 37  Bacteria  normal  0.43543  normal  0.546259 
 
 
-
 
NC_012791  Vapar_4238  two component transcriptional regulator, LuxR family  38.58 
 
 
356 aa  205  7e-52  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_007794  Saro_1665  two component LuxR family transcriptional regulator  43.29 
 
 
307 aa  204  1e-51  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  n/a   
 
 
-
 
NC_011138  MADE_00878  two-component response regulator  38.89 
 
 
298 aa  201  9.999999999999999e-51  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_010571  Oter_1720  two component LuxR family transcriptional regulator  38.19 
 
 
301 aa  182  5.0000000000000004e-45  Opitutus terrae PB90-1  Bacteria  normal  0.162572  normal  0.616267 
 
 
-
 
NC_004578  PSPTO_4080  DNA-binding response regulator, LuxR family  51.18 
 
 
222 aa  148  8e-35  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.542388  n/a   
 
 
-
 
NC_010623  Bphy_4530  response regulator receiver sensor signal transduction histidine kinase  54.26 
 
 
386 aa  144  2e-33  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_011884  Cyan7425_3210  response regulator receiver modulated diguanylate cyclase  51.18 
 
 
337 aa  142  6e-33  Cyanothece sp. PCC 7425  Bacteria  normal  0.32327  normal  0.712325 
 
 
-
 
NC_013730  Slin_2507  two component, sigma54 specific, transcriptional regulator, Fis family  53.04 
 
 
488 aa  142  8e-33  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.182398 
 
 
-
 
NC_010551  BamMC406_1236  response regulator receiver sensor signal transduction histidine kinase  52.71 
 
 
386 aa  141  1.9999999999999998e-32  Burkholderia ambifaria MC40-6  Bacteria  normal  0.493129  normal 
 
 
-
 
NC_007413  Ava_2562  response regulator receiver Signal transduction histidine kinase  45.71 
 
 
437 aa  137  1e-31  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_011884  Cyan7425_0790  multi-sensor signal transduction histidine kinase  47.33 
 
 
566 aa  138  1e-31  Cyanothece sp. PCC 7425  Bacteria  normal  0.391268  normal 
 
 
-
 
NC_010814  Glov_1118  response regulator receiver sensor signal transduction histidine kinase  44.44 
 
 
452 aa  133  3.9999999999999996e-30  Geobacter lovleyi SZ  Bacteria  hitchhiker  0.000972917  n/a   
 
 
-
 
NC_010676  Bphyt_6236  multi-sensor signal transduction histidine kinase  50.42 
 
 
553 aa  133  3.9999999999999996e-30  Burkholderia phytofirmans PsJN  Bacteria  normal  normal  0.914679 
 
 
-
 
NC_013440  Hoch_6548  response regulator receiver sensor signal transduction histidine kinase  50 
 
 
397 aa  132  6.999999999999999e-30  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.543575 
 
 
-
 
NC_010571  Oter_0809  response regulator receiver sensor signal transduction histidine kinase  49.57 
 
 
367 aa  130  3e-29  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
NC_010625  Bphy_6559  multi-sensor signal transduction histidine kinase  52.94 
 
 
541 aa  129  4.0000000000000003e-29  Burkholderia phymatum STM815  Bacteria  normal  normal  0.59439 
 
 
-
 
NC_014248  Aazo_4465  response regulator receiver sensor signal transduction histidine kinase  42.86 
 
 
437 aa  128  1.0000000000000001e-28  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_010627  Bphy_7700  multi-sensor signal transduction histidine kinase  53.91 
 
 
541 aa  127  2.0000000000000002e-28  Burkholderia phymatum STM815  Bacteria  normal  0.163324  normal  0.507763 
 
 
-
 
NC_007413  Ava_2149  response regulator receiver Signal transduction histidine kinase  45.11 
 
 
407 aa  125  6e-28  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.142048 
 
 
-
 
NC_011146  Gbem_1018  response regulator receiver sensor signal transduction histidine kinase  44.96 
 
 
441 aa  123  3e-27  Geobacter bemidjiensis Bem  Bacteria  hitchhiker  0.00729938  n/a   
 
 
-
 
NC_007413  Ava_4136  response regulator receiver Signal transduction histidine kinase  40.16 
 
 
440 aa  121  9.999999999999999e-27  Anabaena variabilis ATCC 29413  Bacteria  decreased coverage  0.00000660181  hitchhiker  0.00876613 
 
 
-
 
NC_012918  GM21_3242  response regulator receiver sensor signal transduction histidine kinase  46.03 
 
 
441 aa  121  9.999999999999999e-27  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_013440  Hoch_2175  response regulator receiver sensor signal transduction histidine kinase  49.59 
 
 
395 aa  120  1.9999999999999998e-26  Haliangium ochraceum DSM 14365  Bacteria  normal  0.924768  normal  0.400775 
 
 
-
 
NC_013161  Cyan8802_1380  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  35.48 
 
 
715 aa  119  7e-26  Cyanothece sp. PCC 8802  Bacteria  normal  0.923401  normal 
 
 
-
 
NC_014248  Aazo_4229  response regulator receiver sensor signal transduction histidine kinase  44.63 
 
 
383 aa  117  1.9999999999999998e-25  'Nostoc azollae' 0708  Bacteria  normal  0.599633  n/a   
 
 
-
 
NC_011726  PCC8801_1350  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  34.95 
 
 
715 aa  117  1.9999999999999998e-25  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013216  Dtox_1577  response regulator receiver modulated diguanylate cyclase  49.57 
 
 
314 aa  117  3e-25  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_009767  Rcas_3134  response regulator receiver protein  44.03 
 
 
200 aa  117  3e-25  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_010571  Oter_3856  response regulator receiver sensor signal transduction histidine kinase  43.08 
 
 
378 aa  115  6.9999999999999995e-25  Opitutus terrae PB90-1  Bacteria  normal  normal  0.215089 
 
 
-
 
NC_008312  Tery_4155  response regulator receiver sensor signal transduction histidine kinase  38.46 
 
 
440 aa  114  1.0000000000000001e-24  Trichodesmium erythraeum IMS101  Bacteria  normal  0.50715  normal 
 
 
-
 
NC_010814  Glov_3523  response regulator receiver modulated metal dependent phosphohydrolase  51.3 
 
 
363 aa  113  5e-24  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_2347  response regulator receiver protein  43.9 
 
 
202 aa  112  6e-24  Roseiflexus sp. RS-1  Bacteria  normal  0.56815  normal 
 
 
-
 
NC_008700  Sama_2951  response regulator receiver protein  45.86 
 
 
340 aa  112  7.000000000000001e-24  Shewanella amazonensis SB2B  Bacteria  normal  normal  0.129077 
 
 
-
 
NC_009654  Mmwyl1_1086  response regulator receiver modulated metal dependent phosphohydrolase  32.7 
 
 
331 aa  112  9e-24  Marinomonas sp. MWYL1  Bacteria  normal  0.226857  hitchhiker  0.0000000112469 
 
 
-
 
NC_009092  Shew_3199  response regulator receiver modulated metal dependent phosphohydrolase  44.36 
 
 
339 aa  111  1.0000000000000001e-23  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_009997  Sbal195_0871  response regulator receiver modulated metal dependent phosphohydrolase  42.22 
 
 
338 aa  112  1.0000000000000001e-23  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_011663  Sbal223_0859  response regulator receiver modulated metal dependent phosphohydrolase  42.22 
 
 
338 aa  111  1.0000000000000001e-23  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_009665  Shew185_0836  response regulator receiver modulated metal dependent phosphohydrolase  42.22 
 
 
338 aa  111  1.0000000000000001e-23  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009052  Sbal_3504  response regulator receiver modulated metal dependent phosphohydrolase  42.22 
 
 
338 aa  111  1.0000000000000001e-23  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009012  Cthe_1826  response regulator receiver sensor signal transduction histidine kinase  42.5 
 
 
363 aa  111  1.0000000000000001e-23  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_004347  SO_0860  response regulator  44.7 
 
 
339 aa  111  2.0000000000000002e-23  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_011728  BbuZS7_0421  response regulatory protein  34.78 
 
 
305 aa  110  2.0000000000000002e-23  Borrelia burgdorferi ZS7  Bacteria  normal  0.972098  n/a   
 
 
-
 
NC_011726  PCC8801_2041  response regulator receiver modulated diguanylate cyclase  38.41 
 
 
317 aa  110  4.0000000000000004e-23  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013161  Cyan8802_2067  response regulator receiver modulated diguanylate cyclase  38.41 
 
 
317 aa  110  4.0000000000000004e-23  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_2150  response regulator receiver Signal transduction histidine kinase  42.61 
 
 
443 aa  109  5e-23  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.394463 
 
 
-
 
NC_010571  Oter_0959  response regulator receiver sensor signal transduction histidine kinase  40.58 
 
 
372 aa  109  5e-23  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
NC_013161  Cyan8802_1169  response regulator receiver modulated diguanylate cyclase  36.84 
 
 
308 aa  109  6e-23  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_011726  PCC8801_1139  response regulator receiver modulated diguanylate cyclase  36.84 
 
 
308 aa  109  6e-23  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_008321  Shewmr4_0716  response regulator receiver modulated metal dependent phosphohydrolase  43.94 
 
 
338 aa  109  7.000000000000001e-23  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_3306  response regulator receiver modulated metal dependent phosphohydrolase  43.94 
 
 
338 aa  109  7.000000000000001e-23  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_008577  Shewana3_3418  response regulator receiver modulated metal dependent phosphohydrolase  43.94 
 
 
338 aa  109  7.000000000000001e-23  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_009901  Spea_0629  response regulator receiver modulated metal dependent phosphohydrolase  43.94 
 
 
339 aa  108  8.000000000000001e-23  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_014248  Aazo_1477  response regulator receiver modulated diguanylate cyclase  37.14 
 
 
317 aa  108  1e-22  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_009438  Sputcn32_3141  response regulator receiver modulated metal dependent phosphohydrolase  43.94 
 
 
338 aa  108  1e-22  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_010681  Bphyt_2397  two component transcriptional regulator, AraC family  41.04 
 
 
269 aa  107  2e-22  Burkholderia phytofirmans PsJN  Bacteria  normal  0.92999  normal  0.351016 
 
 
-
 
NC_007413  Ava_3976  response regulator receiver Signal transduction histidine kinase  43.22 
 
 
431 aa  107  2e-22  Anabaena variabilis ATCC 29413  Bacteria  normal  0.0119459  decreased coverage  0.00202838 
 
 
-
 
NC_008340  Mlg_2429  response regulator receiver modulated metal dependent phosphohydrolase  46.34 
 
 
480 aa  107  2e-22  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal  0.129673 
 
 
-
 
NC_008392  Bamb_6368  two component AraC family transcriptional regulator  46.09 
 
 
271 aa  107  2e-22  Burkholderia ambifaria AMMD  Bacteria  normal  0.434467  normal 
 
 
-
 
NC_013223  Dret_2370  response regulator receiver modulated metal dependent phosphohydrolase  32.18 
 
 
370 aa  107  3e-22  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_007517  Gmet_2999  response regulator receiver (CheY-like) modulated metal dependent phosphohydrolase  40.91 
 
 
361 aa  107  3e-22  Geobacter metallireducens GS-15  Bacteria  normal  normal  0.669597 
 
 
-
 
NC_011729  PCC7424_2188  response regulator receiver sensor signal transduction histidine kinase  33.67 
 
 
384 aa  107  3e-22  Cyanothece sp. PCC 7424  Bacteria  n/a    hitchhiker  0.00677544 
 
 
-
 
NC_011312  VSAL_I2575  chitin degradation sensor protein  37.69 
 
 
1127 aa  107  3e-22  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_011729  PCC7424_0178  response regulator receiver modulated diguanylate cyclase  37.3 
 
 
322 aa  106  4e-22  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.895619 
 
 
-
 
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